Experiment: WM_Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjdB and JDDGAC_10155 are separated by 10 nucleotides JDDGAC_10155 and JDDGAC_10160 overlap by 4 nucleotides JDDGAC_10160 and JDDGAC_10165 are separated by 11 nucleotides JDDGAC_10165 and JDDGAC_10170 overlap by 8 nucleotides JDDGAC_10170 and clpP are separated by 86 nucleotides
JDDGAC_10150: yjdB - phage tail protein, at 1,812,815 to 1,813,558
yjdB
JDDGAC_10155: JDDGAC_10155 - phage tail protein, at 1,813,569 to 1,813,970
_10155
JDDGAC_10160: JDDGAC_10160 - phage tail protein, at 1,813,967 to 1,814,545
_10160
JDDGAC_10165: JDDGAC_10165 - DNA breaking-rejoining protein, at 1,814,557 to 1,814,832
_10165
JDDGAC_10170: JDDGAC_10170 - recombinase RecA, at 1,814,825 to 1,815,148
_10170
JDDGAC_10175: clpP - ATP-dependent protease ClpP, protease subunit, at 1,815,235 to 1,817,262
clpP
Position (kb) 1814
1815 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1813.570 kb on + strand at 1813.579 kb on + strand at 1813.580 kb on - strand at 1813.580 kb on - strand at 1813.628 kb on + strand, within JDDGAC_10155 at 1813.640 kb on - strand, within JDDGAC_10155 at 1813.690 kb on - strand, within JDDGAC_10155 at 1813.690 kb on - strand, within JDDGAC_10155 at 1813.690 kb on - strand, within JDDGAC_10155 at 1813.730 kb on + strand, within JDDGAC_10155 at 1813.731 kb on - strand, within JDDGAC_10155 at 1813.731 kb on - strand, within JDDGAC_10155 at 1813.776 kb on - strand, within JDDGAC_10155 at 1813.958 kb on + strand at 1813.959 kb on - strand at 1814.007 kb on + strand at 1814.008 kb on - strand at 1814.131 kb on + strand, within JDDGAC_10160 at 1814.132 kb on - strand, within JDDGAC_10160 at 1814.276 kb on - strand, within JDDGAC_10160 at 1814.276 kb on - strand, within JDDGAC_10160 at 1814.465 kb on + strand, within JDDGAC_10160 at 1814.755 kb on - strand, within JDDGAC_10165 at 1814.790 kb on + strand, within JDDGAC_10165 at 1814.911 kb on + strand, within JDDGAC_10170 at 1814.981 kb on - strand, within JDDGAC_10170 at 1814.990 kb on - strand, within JDDGAC_10170 at 1815.148 kb on + strand at 1815.148 kb on + strand at 1815.148 kb on + strand at 1815.149 kb on - strand at 1815.291 kb on + strand at 1815.342 kb on + strand at 1815.342 kb on + strand at 1815.343 kb on - strand at 1815.343 kb on - strand at 1815.344 kb on + strand at 1815.344 kb on + strand at 1815.344 kb on + strand at 1815.345 kb on - strand at 1815.345 kb on - strand at 1815.429 kb on + strand at 1815.430 kb on - strand at 1815.484 kb on - strand, within clpP at 1815.484 kb on - strand, within clpP at 1815.484 kb on - strand, within clpP at 1815.487 kb on - strand, within clpP at 1815.706 kb on + strand, within clpP at 1815.707 kb on - strand, within clpP at 1815.707 kb on - strand, within clpP at 1815.707 kb on - strand, within clpP at 1815.750 kb on - strand, within clpP at 1815.814 kb on - strand, within clpP
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas58 remove 1,813,570 + -0.9 1,813,579 + +1.2 1,813,580 - +0.1 1,813,580 - +1.5 1,813,628 + JDDGAC_10155 0.15 -2.3 1,813,640 - JDDGAC_10155 0.18 +0.1 1,813,690 - JDDGAC_10155 0.30 +0.1 1,813,690 - JDDGAC_10155 0.30 -0.7 1,813,690 - JDDGAC_10155 0.30 +1.0 1,813,730 + JDDGAC_10155 0.40 -0.3 1,813,731 - JDDGAC_10155 0.40 +0.3 1,813,731 - JDDGAC_10155 0.40 +2.8 1,813,776 - JDDGAC_10155 0.51 -0.3 1,813,958 + +0.2 1,813,959 - -0.7 1,814,007 + -2.4 1,814,008 - -0.5 1,814,131 + JDDGAC_10160 0.28 -0.0 1,814,132 - JDDGAC_10160 0.28 -1.4 1,814,276 - JDDGAC_10160 0.53 -2.5 1,814,276 - JDDGAC_10160 0.53 -0.2 1,814,465 + JDDGAC_10160 0.86 -1.5 1,814,755 - JDDGAC_10165 0.72 -0.4 1,814,790 + JDDGAC_10165 0.84 -2.9 1,814,911 + JDDGAC_10170 0.27 -1.5 1,814,981 - JDDGAC_10170 0.48 -1.0 1,814,990 - JDDGAC_10170 0.51 +0.3 1,815,148 + +0.8 1,815,148 + +0.1 1,815,148 + +0.6 1,815,149 - -0.3 1,815,291 + -0.7 1,815,342 + -0.4 1,815,342 + -1.5 1,815,343 - -0.1 1,815,343 - +0.6 1,815,344 + +0.5 1,815,344 + -1.0 1,815,344 + +1.2 1,815,345 - -1.4 1,815,345 - +1.1 1,815,429 + +0.1 1,815,430 - -0.6 1,815,484 - clpP JDDGAC_10175 0.12 +0.6 1,815,484 - clpP JDDGAC_10175 0.12 -1.1 1,815,484 - clpP JDDGAC_10175 0.12 +1.0 1,815,487 - clpP JDDGAC_10175 0.12 +1.1 1,815,706 + clpP JDDGAC_10175 0.23 +1.9 1,815,707 - clpP JDDGAC_10175 0.23 +0.1 1,815,707 - clpP JDDGAC_10175 0.23 +0.4 1,815,707 - clpP JDDGAC_10175 0.23 -0.1 1,815,750 - clpP JDDGAC_10175 0.25 -0.9 1,815,814 - clpP JDDGAC_10175 0.29 +0.9
Or see this region's nucleotide sequence