Strain Fitness in Escherichia coli ECRC98 around JDDGAC_06745

Experiment: WM_Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpotA and potB overlap by 17 nucleotidespotB and espK are separated by 363 nucleotides JDDGAC_06740: potA - spermidine/putrescine ABC transporter ATP-binding protein PotA, at 1,173,055 to 1,174,191 potA JDDGAC_06745: potB - spermidine/putrescine ABC transporter permease PotB, at 1,174,175 to 1,175,038 potB JDDGAC_06750: espK - type III secretion system effector EspK, at 1,175,402 to 1,176,763 espK Position (kb) 1174 1175 1176Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1173.483 kb on + strand, within potAat 1173.639 kb on + strand, within potAat 1173.882 kb on + strand, within potAat 1173.882 kb on + strand, within potAat 1173.885 kb on + strand, within potAat 1173.885 kb on + strand, within potAat 1173.889 kb on + strand, within potAat 1173.950 kb on + strand, within potAat 1173.951 kb on - strand, within potAat 1174.189 kb on + strandat 1174.189 kb on + strandat 1174.203 kb on + strandat 1174.331 kb on + strand, within potBat 1174.331 kb on + strand, within potBat 1174.355 kb on + strand, within potBat 1174.368 kb on + strand, within potBat 1174.369 kb on - strand, within potBat 1174.527 kb on - strand, within potBat 1174.559 kb on + strand, within potBat 1174.771 kb on + strand, within potBat 1174.841 kb on + strand, within potBat 1174.841 kb on + strand, within potBat 1174.899 kb on + strand, within potBat 1174.962 kb on + strandat 1175.286 kb on + strandat 1175.350 kb on + strandat 1175.359 kb on + strandat 1175.367 kb on - strandat 1175.529 kb on - strandat 1175.621 kb on - strand, within espKat 1175.635 kb on + strand, within espKat 1175.786 kb on + strand, within espKat 1175.786 kb on + strand, within espKat 1175.790 kb on + strand, within espKat 1175.895 kb on - strand, within espKat 1175.975 kb on - strand, within espKat 1175.977 kb on + strand, within espKat 1175.977 kb on + strand, within espKat 1175.978 kb on - strand, within espK

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas58
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1,173,483 + potA JDDGAC_06740 0.38 +0.1
1,173,639 + potA JDDGAC_06740 0.51 +0.9
1,173,882 + potA JDDGAC_06740 0.73 -0.6
1,173,882 + potA JDDGAC_06740 0.73 +1.6
1,173,885 + potA JDDGAC_06740 0.73 -0.5
1,173,885 + potA JDDGAC_06740 0.73 +0.8
1,173,889 + potA JDDGAC_06740 0.73 +0.8
1,173,950 + potA JDDGAC_06740 0.79 +0.1
1,173,951 - potA JDDGAC_06740 0.79 +0.0
1,174,189 + -0.6
1,174,189 + +0.2
1,174,203 + +0.1
1,174,331 + potB JDDGAC_06745 0.18 -0.9
1,174,331 + potB JDDGAC_06745 0.18 +0.6
1,174,355 + potB JDDGAC_06745 0.21 -0.9
1,174,368 + potB JDDGAC_06745 0.22 -0.3
1,174,369 - potB JDDGAC_06745 0.22 -0.6
1,174,527 - potB JDDGAC_06745 0.41 -0.8
1,174,559 + potB JDDGAC_06745 0.44 -2.8
1,174,771 + potB JDDGAC_06745 0.69 -1.1
1,174,841 + potB JDDGAC_06745 0.77 +0.6
1,174,841 + potB JDDGAC_06745 0.77 -0.6
1,174,899 + potB JDDGAC_06745 0.84 -0.7
1,174,962 + -0.4
1,175,286 + -1.5
1,175,350 + -4.4
1,175,359 + +1.6
1,175,367 - +0.4
1,175,529 - -0.3
1,175,621 - espK JDDGAC_06750 0.16 -0.5
1,175,635 + espK JDDGAC_06750 0.17 +1.0
1,175,786 + espK JDDGAC_06750 0.28 -1.1
1,175,786 + espK JDDGAC_06750 0.28 +0.6
1,175,790 + espK JDDGAC_06750 0.28 -1.7
1,175,895 - espK JDDGAC_06750 0.36 -0.4
1,175,975 - espK JDDGAC_06750 0.42 +1.0
1,175,977 + espK JDDGAC_06750 0.42 +0.6
1,175,977 + espK JDDGAC_06750 0.42 +0.7
1,175,978 - espK JDDGAC_06750 0.42 +1.2

Or see this region's nucleotide sequence