Strain Fitness in Escherichia coli ECRC98 around JDDGAC_06700

Experiment: WM_Bas58

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_06695 and JDDGAC_06700 overlap by 4 nucleotidesJDDGAC_06700 and JDDGAC_06705 are separated by 5 nucleotidesJDDGAC_06705 and JDDGAC_06710 overlap by 8 nucleotidesJDDGAC_06710 and JDDGAC_06715 overlap by 11 nucleotidesJDDGAC_06715 and JDDGAC_06720 overlap by 8 nucleotides JDDGAC_06695: JDDGAC_06695 - DNA primase, at 1,164,789 to 1,166,189 _06695 JDDGAC_06700: JDDGAC_06700 - DUF4222 domain-containing protein, at 1,166,186 to 1,166,485 _06700 JDDGAC_06705: JDDGAC_06705 - hypothetical protein, at 1,166,491 to 1,166,724 _06705 JDDGAC_06710: JDDGAC_06710 - Putative prophage protein, at 1,166,717 to 1,167,181 _06710 JDDGAC_06715: JDDGAC_06715 - hypothetical protein, at 1,167,171 to 1,167,383 _06715 JDDGAC_06720: JDDGAC_06720 - host cell division inhibitor Icd-like protein, at 1,167,376 to 1,168,320 _06720 Position (kb) 1166 1167Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1165.399 kb on - strand, within JDDGAC_06695at 1165.496 kb on - strand, within JDDGAC_06695at 1165.557 kb on + strand, within JDDGAC_06695at 1165.579 kb on + strand, within JDDGAC_06695at 1165.580 kb on - strand, within JDDGAC_06695at 1165.580 kb on - strand, within JDDGAC_06695at 1165.667 kb on + strand, within JDDGAC_06695at 1165.688 kb on - strand, within JDDGAC_06695at 1165.689 kb on + strand, within JDDGAC_06695at 1165.689 kb on + strand, within JDDGAC_06695at 1165.698 kb on + strand, within JDDGAC_06695at 1165.889 kb on - strand, within JDDGAC_06695at 1165.902 kb on + strand, within JDDGAC_06695at 1165.903 kb on - strand, within JDDGAC_06695at 1165.903 kb on - strand, within JDDGAC_06695at 1165.970 kb on - strand, within JDDGAC_06695at 1166.286 kb on - strand, within JDDGAC_06700at 1166.341 kb on - strand, within JDDGAC_06700at 1166.711 kb on + strandat 1166.772 kb on + strand, within JDDGAC_06710at 1166.823 kb on + strand, within JDDGAC_06710at 1166.983 kb on + strand, within JDDGAC_06710at 1166.983 kb on + strand, within JDDGAC_06710at 1167.060 kb on + strand, within JDDGAC_06710at 1167.086 kb on - strand, within JDDGAC_06710at 1167.274 kb on - strand, within JDDGAC_06715at 1167.281 kb on - strand, within JDDGAC_06715at 1167.284 kb on + strand, within JDDGAC_06715at 1167.319 kb on - strand, within JDDGAC_06715at 1167.366 kb on - strandat 1167.377 kb on + strandat 1167.416 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas58
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1,165,399 - JDDGAC_06695 0.44 +2.6
1,165,496 - JDDGAC_06695 0.50 +1.9
1,165,557 + JDDGAC_06695 0.55 +0.2
1,165,579 + JDDGAC_06695 0.56 +0.3
1,165,580 - JDDGAC_06695 0.56 -0.5
1,165,580 - JDDGAC_06695 0.56 +1.0
1,165,667 + JDDGAC_06695 0.63 -2.3
1,165,688 - JDDGAC_06695 0.64 -1.3
1,165,689 + JDDGAC_06695 0.64 -0.1
1,165,689 + JDDGAC_06695 0.64 +0.9
1,165,698 + JDDGAC_06695 0.65 +1.5
1,165,889 - JDDGAC_06695 0.79 +0.6
1,165,902 + JDDGAC_06695 0.79 -0.3
1,165,903 - JDDGAC_06695 0.80 +2.7
1,165,903 - JDDGAC_06695 0.80 +1.1
1,165,970 - JDDGAC_06695 0.84 -0.2
1,166,286 - JDDGAC_06700 0.33 -1.7
1,166,341 - JDDGAC_06700 0.52 -2.2
1,166,711 + +1.8
1,166,772 + JDDGAC_06710 0.12 +0.4
1,166,823 + JDDGAC_06710 0.23 +0.8
1,166,983 + JDDGAC_06710 0.57 +1.0
1,166,983 + JDDGAC_06710 0.57 +2.2
1,167,060 + JDDGAC_06710 0.74 +2.2
1,167,086 - JDDGAC_06710 0.79 +1.2
1,167,274 - JDDGAC_06715 0.48 +1.3
1,167,281 - JDDGAC_06715 0.52 +1.2
1,167,284 + JDDGAC_06715 0.53 +2.2
1,167,319 - JDDGAC_06715 0.69 -0.3
1,167,366 - -0.3
1,167,377 + +4.2
1,167,416 - +1.1

Or see this region's nucleotide sequence