Experiment: WM_Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt jayE and ymfQ overlap by 10 nucleotides ymfQ and JDDGAC_05735 overlap by 1 nucleotides JDDGAC_05735 and JDDGAC_05740 are separated by 34 nucleotides
JDDGAC_05725: jayE - Baseplate J-like protein, at 997,780 to 998,862
jayE
JDDGAC_05730: ymfQ - Bacteriophage Mu-like, Gp48, at 998,853 to 999,413
ymfQ
JDDGAC_05735: JDDGAC_05735 - phage tail protein, at 999,413 to 1,000,324
_05735
JDDGAC_05740: JDDGAC_05740 - phage tail protein, at 1,000,359 to 1,000,880
_05740
Position (kb) 998
999
1000 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 998.170 kb on - strand, within jayE at 998.531 kb on - strand, within jayE at 998.676 kb on - strand, within jayE at 998.676 kb on - strand, within jayE at 998.701 kb on + strand, within jayE at 998.701 kb on + strand, within jayE at 998.701 kb on + strand, within jayE at 998.704 kb on - strand, within jayE at 998.729 kb on + strand, within jayE at 998.824 kb on - strand at 999.083 kb on + strand, within ymfQ at 999.248 kb on + strand, within ymfQ at 999.379 kb on + strand at 999.412 kb on - strand at 999.412 kb on - strand at 999.476 kb on - strand at 999.476 kb on - strand at 999.547 kb on + strand, within JDDGAC_05735 at 999.781 kb on + strand, within JDDGAC_05735 at 999.842 kb on - strand, within JDDGAC_05735 at 999.854 kb on + strand, within JDDGAC_05735 at 999.964 kb on + strand, within JDDGAC_05735 at 1000.033 kb on + strand, within JDDGAC_05735 at 1000.201 kb on + strand, within JDDGAC_05735 at 1000.268 kb on + strand at 1000.268 kb on + strand at 1000.294 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas58 remove 998,170 - jayE JDDGAC_05725 0.36 +1.6 998,531 - jayE JDDGAC_05725 0.69 +0.9 998,676 - jayE JDDGAC_05725 0.83 +1.5 998,676 - jayE JDDGAC_05725 0.83 +0.1 998,701 + jayE JDDGAC_05725 0.85 +0.4 998,701 + jayE JDDGAC_05725 0.85 +0.5 998,701 + jayE JDDGAC_05725 0.85 +0.6 998,704 - jayE JDDGAC_05725 0.85 +0.4 998,729 + jayE JDDGAC_05725 0.88 -2.8 998,824 - +0.4 999,083 + ymfQ JDDGAC_05730 0.41 -0.3 999,248 + ymfQ JDDGAC_05730 0.70 -1.3 999,379 + -0.2 999,412 - +0.7 999,412 - -0.9 999,476 - +1.2 999,476 - -1.7 999,547 + JDDGAC_05735 0.15 -1.1 999,781 + JDDGAC_05735 0.40 +0.1 999,842 - JDDGAC_05735 0.47 +1.9 999,854 + JDDGAC_05735 0.48 -0.6 999,964 + JDDGAC_05735 0.60 +1.6 1,000,033 + JDDGAC_05735 0.68 -1.4 1,000,201 + JDDGAC_05735 0.86 -0.9 1,000,268 + +1.1 1,000,268 + +2.0 1,000,294 + -2.9
Or see this region's nucleotide sequence