Experiment: WM_Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gpT and JDDGAC_05665 are separated by 43 nucleotides JDDGAC_05665 and gp36 overlap by 4 nucleotides gp36 and gp37 overlap by 4 nucleotides gp37 and JDDGAC_05680 are separated by 0 nucleotides JDDGAC_05680 and gpL overlap by 4 nucleotides
JDDGAC_05660: gpT - head protein, at 987,110 to 988,057
gpT
JDDGAC_05665: JDDGAC_05665 - FluMu-N domain-containing protein, at 988,101 to 988,517
_05665
JDDGAC_05670: gp36 - Bacteriophage Mu, Gp36, at 988,514 to 988,933
gp36
JDDGAC_05675: gp37 - DUF1834 domain-containing protein, at 988,930 to 989,490
gp37
JDDGAC_05680: JDDGAC_05680 - DUF2635 domain-containing protein, at 989,491 to 989,736
_05680
JDDGAC_05685: gpL - phage tail protein, at 989,733 to 991,235
gpL
Position (kb) 988
989 Strain fitness (log2 ratio) -2
-1
0
1
2 at 987.647 kb on + strand, within gpT at 987.673 kb on - strand, within gpT at 987.818 kb on + strand, within gpT at 987.925 kb on + strand, within gpT at 988.049 kb on + strand at 988.101 kb on - strand at 988.312 kb on + strand, within JDDGAC_05665 at 988.312 kb on + strand, within JDDGAC_05665 at 988.313 kb on - strand, within JDDGAC_05665 at 988.379 kb on - strand, within JDDGAC_05665 at 988.674 kb on - strand, within gp36 at 988.739 kb on + strand, within gp36 at 988.929 kb on + strand at 988.930 kb on - strand at 988.936 kb on - strand at 988.954 kb on + strand at 988.954 kb on + strand at 988.954 kb on + strand at 988.954 kb on + strand at 988.955 kb on - strand at 988.955 kb on - strand at 989.068 kb on + strand, within gp37 at 989.068 kb on + strand, within gp37 at 989.068 kb on + strand, within gp37 at 989.069 kb on - strand, within gp37 at 989.134 kb on + strand, within gp37 at 989.134 kb on + strand, within gp37 at 989.251 kb on + strand, within gp37 at 989.311 kb on + strand, within gp37 at 989.320 kb on + strand, within gp37 at 989.320 kb on + strand, within gp37 at 989.436 kb on + strand at 989.437 kb on - strand at 989.437 kb on - strand at 989.437 kb on - strand at 989.795 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas58 remove 987,647 + gpT JDDGAC_05660 0.57 -0.6 987,673 - gpT JDDGAC_05660 0.59 -0.1 987,818 + gpT JDDGAC_05660 0.75 -0.2 987,925 + gpT JDDGAC_05660 0.86 +1.0 988,049 + +0.6 988,101 - -1.6 988,312 + JDDGAC_05665 0.51 -0.2 988,312 + JDDGAC_05665 0.51 +0.4 988,313 - JDDGAC_05665 0.51 -1.3 988,379 - JDDGAC_05665 0.67 -0.2 988,674 - gp36 JDDGAC_05670 0.38 -0.4 988,739 + gp36 JDDGAC_05670 0.54 -2.7 988,929 + -0.3 988,930 - +0.9 988,936 - +0.4 988,954 + -1.1 988,954 + +2.1 988,954 + +0.3 988,954 + +0.7 988,955 - -0.8 988,955 - +0.5 989,068 + gp37 JDDGAC_05675 0.25 +2.1 989,068 + gp37 JDDGAC_05675 0.25 +0.2 989,068 + gp37 JDDGAC_05675 0.25 +0.1 989,069 - gp37 JDDGAC_05675 0.25 -0.4 989,134 + gp37 JDDGAC_05675 0.36 -0.0 989,134 + gp37 JDDGAC_05675 0.36 +0.3 989,251 + gp37 JDDGAC_05675 0.57 -0.1 989,311 + gp37 JDDGAC_05675 0.68 -1.1 989,320 + gp37 JDDGAC_05675 0.70 -1.2 989,320 + gp37 JDDGAC_05675 0.70 +1.5 989,436 + -1.2 989,437 - +1.4 989,437 - +0.3 989,437 - -0.4 989,795 + +0.6
Or see this region's nucleotide sequence