Experiment: WM_Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yciK and cobO overlap by 4 nucleotides cobO and rluB are separated by 39 nucleotides rluB and yciQ are separated by 212 nucleotides
JDDGAC_05165: yciK - YciK family oxidoreductase, at 908,090 to 908,848
yciK
JDDGAC_05170: cobO - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 908,845 to 909,435
cobO
JDDGAC_05175: rluB - 23S rRNA pseudouridine(2605) synthase RluB, at 909,475 to 910,347
rluB
JDDGAC_05180: yciQ - Uncharacterized protein YciQ, at 910,560 to 912,143
yciQ
Position (kb) 909
910
911 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 908.537 kb on - strand, within yciK at 908.582 kb on + strand, within yciK at 908.582 kb on + strand, within yciK at 908.582 kb on + strand, within yciK at 908.747 kb on - strand, within yciK at 908.747 kb on - strand, within yciK at 909.039 kb on + strand, within cobO at 909.118 kb on - strand, within cobO at 909.247 kb on + strand, within cobO at 909.253 kb on + strand, within cobO at 909.342 kb on + strand, within cobO at 909.343 kb on - strand, within cobO at 909.365 kb on + strand, within cobO at 909.374 kb on + strand, within cobO at 909.420 kb on - strand at 909.420 kb on - strand at 909.434 kb on - strand at 909.467 kb on + strand at 909.467 kb on + strand at 909.632 kb on + strand, within rluB at 909.632 kb on + strand, within rluB at 909.633 kb on - strand, within rluB at 909.637 kb on - strand, within rluB at 909.637 kb on - strand, within rluB at 909.637 kb on - strand, within rluB at 909.637 kb on - strand, within rluB at 909.637 kb on - strand, within rluB at 910.130 kb on + strand, within rluB at 910.134 kb on - strand, within rluB at 910.348 kb on - strand at 910.386 kb on - strand at 910.386 kb on - strand at 910.415 kb on + strand at 910.416 kb on - strand at 910.416 kb on - strand at 910.433 kb on - strand at 910.463 kb on - strand at 910.467 kb on - strand at 910.483 kb on + strand at 910.511 kb on - strand at 910.511 kb on - strand at 910.518 kb on + strand at 910.519 kb on - strand at 910.558 kb on - strand at 910.846 kb on + strand, within yciQ at 910.847 kb on - strand, within yciQ at 910.856 kb on + strand, within yciQ at 910.961 kb on - strand, within yciQ at 910.974 kb on - strand, within yciQ at 910.976 kb on - strand, within yciQ at 910.989 kb on + strand, within yciQ at 910.990 kb on - strand, within yciQ at 911.018 kb on - strand, within yciQ at 911.160 kb on - strand, within yciQ at 911.310 kb on + strand, within yciQ
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas58 remove 908,537 - yciK JDDGAC_05165 0.59 +0.2 908,582 + yciK JDDGAC_05165 0.65 -0.1 908,582 + yciK JDDGAC_05165 0.65 -0.7 908,582 + yciK JDDGAC_05165 0.65 -1.2 908,747 - yciK JDDGAC_05165 0.87 -1.2 908,747 - yciK JDDGAC_05165 0.87 -0.2 909,039 + cobO JDDGAC_05170 0.33 +0.5 909,118 - cobO JDDGAC_05170 0.46 -0.1 909,247 + cobO JDDGAC_05170 0.68 -0.2 909,253 + cobO JDDGAC_05170 0.69 -2.7 909,342 + cobO JDDGAC_05170 0.84 -0.9 909,343 - cobO JDDGAC_05170 0.84 +1.0 909,365 + cobO JDDGAC_05170 0.88 +0.6 909,374 + cobO JDDGAC_05170 0.90 +0.3 909,420 - +0.7 909,420 - -0.7 909,434 - -0.7 909,467 + -1.7 909,467 + +0.0 909,632 + rluB JDDGAC_05175 0.18 +1.1 909,632 + rluB JDDGAC_05175 0.18 +0.2 909,633 - rluB JDDGAC_05175 0.18 -1.6 909,637 - rluB JDDGAC_05175 0.19 -0.7 909,637 - rluB JDDGAC_05175 0.19 -2.7 909,637 - rluB JDDGAC_05175 0.19 -1.3 909,637 - rluB JDDGAC_05175 0.19 -2.6 909,637 - rluB JDDGAC_05175 0.19 -0.2 910,130 + rluB JDDGAC_05175 0.75 -1.6 910,134 - rluB JDDGAC_05175 0.75 +0.7 910,348 - -0.7 910,386 - +0.8 910,386 - -0.0 910,415 + -1.8 910,416 - -2.4 910,416 - +1.8 910,433 - -2.1 910,463 - +0.9 910,467 - -1.2 910,483 + -0.7 910,511 - -0.7 910,511 - -1.5 910,518 + -3.4 910,519 - +0.3 910,558 - -0.2 910,846 + yciQ JDDGAC_05180 0.18 +0.8 910,847 - yciQ JDDGAC_05180 0.18 -1.9 910,856 + yciQ JDDGAC_05180 0.19 -0.2 910,961 - yciQ JDDGAC_05180 0.25 +4.7 910,974 - yciQ JDDGAC_05180 0.26 -0.2 910,976 - yciQ JDDGAC_05180 0.26 -0.5 910,989 + yciQ JDDGAC_05180 0.27 -1.3 910,990 - yciQ JDDGAC_05180 0.27 +0.8 911,018 - yciQ JDDGAC_05180 0.29 +0.4 911,160 - yciQ JDDGAC_05180 0.38 -0.2 911,310 + yciQ JDDGAC_05180 0.47 -0.9
Or see this region's nucleotide sequence