Strain Fitness in Escherichia coli ECRC98 around JDDGAC_03800

Experiment: WM_Bas58

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntdosP and dosP overlap by 4 nucleotidesdosP and ddpX are separated by 257 nucleotidesddpX and ddpA are separated by 13 nucleotides JDDGAC_03795: dosP - oxygen-sensing cyclic-di-GMP phosphodiesterase, at 652,231 to 653,472 dosP JDDGAC_03800: dosP - oxygen-sensing cyclic-di-GMP phosphodiesterase, at 653,469 to 654,620 dosP JDDGAC_03805: ddpX - D-alanyl-D-alanine dipeptidase, at 654,878 to 655,459 ddpX JDDGAC_03810: ddpA - putative D,D-dipeptide-binding periplasmic protein DdpA, at 655,473 to 657,023 ddpA Position (kb) 653 654 655Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 652.777 kb on - strand, within dosPat 652.956 kb on - strand, within dosPat 653.715 kb on + strand, within dosPat 653.772 kb on + strand, within dosPat 654.546 kb on + strandat 654.788 kb on + strandat 654.864 kb on + strandat 654.864 kb on + strandat 654.971 kb on - strand, within ddpXat 654.977 kb on - strand, within ddpXat 655.062 kb on + strand, within ddpXat 655.062 kb on + strand, within ddpXat 655.062 kb on + strand, within ddpXat 655.139 kb on + strand, within ddpXat 655.429 kb on + strandat 655.431 kb on + strandat 655.562 kb on + strandat 655.563 kb on - strandat 655.618 kb on + strandat 655.619 kb on - strandat 655.619 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas58
remove
652,777 - dosP JDDGAC_03795 0.44 -0.5
652,956 - dosP JDDGAC_03795 0.58 +0.3
653,715 + dosP JDDGAC_03800 0.21 -2.5
653,772 + dosP JDDGAC_03800 0.26 -1.0
654,546 + -1.2
654,788 + +1.1
654,864 + -1.0
654,864 + -0.8
654,971 - ddpX JDDGAC_03805 0.16 -0.7
654,977 - ddpX JDDGAC_03805 0.17 +2.5
655,062 + ddpX JDDGAC_03805 0.32 +0.9
655,062 + ddpX JDDGAC_03805 0.32 +1.7
655,062 + ddpX JDDGAC_03805 0.32 +0.1
655,139 + ddpX JDDGAC_03805 0.45 -0.9
655,429 + -0.2
655,431 + -0.7
655,562 + +0.8
655,563 - -2.9
655,618 + +1.2
655,619 - -0.8
655,619 - -0.2

Or see this region's nucleotide sequence