Experiment: WM_Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydeE and eamA are separated by 194 nucleotides eamA and marB are separated by 30 nucleotides marB and marA are separated by 31 nucleotides marA and marR are separated by 19 nucleotides
JDDGAC_03570: ydeE - efflux MFS transporter YdeE, at 593,594 to 594,781
ydeE
JDDGAC_03575: eamA - O-acetylserine/cysteine exporter, at 594,976 to 595,875
eamA
JDDGAC_03580: marB - multiple antibiotic resistance protein MarB, at 595,906 to 596,124
marB
JDDGAC_03585: marA - MDR efflux pump AcrAB transcriptional activator MarA, at 596,156 to 596,539
marA
JDDGAC_03590: marR - multiple antibiotic resistance transcriptional regulator MarR, at 596,559 to 596,993
marR
Position (kb) 594
595
596 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 593.998 kb on - strand, within ydeE at 594.463 kb on + strand, within ydeE at 594.542 kb on - strand, within ydeE at 594.694 kb on + strand at 594.725 kb on + strand at 594.856 kb on + strand at 594.857 kb on - strand at 594.866 kb on + strand at 594.866 kb on + strand at 594.867 kb on - strand at 594.867 kb on - strand at 594.878 kb on - strand at 594.972 kb on + strand at 595.004 kb on + strand at 595.007 kb on + strand at 595.019 kb on + strand at 595.374 kb on + strand, within eamA at 595.630 kb on + strand, within eamA at 595.652 kb on + strand, within eamA at 595.757 kb on + strand, within eamA at 595.822 kb on + strand at 595.902 kb on + strand at 595.907 kb on + strand at 595.908 kb on - strand at 595.908 kb on - strand at 595.908 kb on - strand at 595.908 kb on - strand at 595.924 kb on - strand at 595.926 kb on - strand at 596.207 kb on - strand, within marA at 596.305 kb on - strand, within marA at 596.516 kb on - strand at 596.653 kb on - strand, within marR at 596.653 kb on - strand, within marR at 596.775 kb on - strand, within marR at 596.775 kb on - strand, within marR at 596.775 kb on - strand, within marR
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas58 remove 593,998 - ydeE JDDGAC_03570 0.34 -0.6 594,463 + ydeE JDDGAC_03570 0.73 +2.1 594,542 - ydeE JDDGAC_03570 0.80 +0.8 594,694 + +0.5 594,725 + +1.2 594,856 + +1.0 594,857 - +0.0 594,866 + -0.2 594,866 + +0.1 594,867 - +0.7 594,867 - -0.4 594,878 - +1.1 594,972 + -0.5 595,004 + +0.1 595,007 + -1.9 595,019 + +0.7 595,374 + eamA JDDGAC_03575 0.44 -0.7 595,630 + eamA JDDGAC_03575 0.73 -0.9 595,652 + eamA JDDGAC_03575 0.75 -3.1 595,757 + eamA JDDGAC_03575 0.87 -1.1 595,822 + +0.9 595,902 + -1.2 595,907 + +0.9 595,908 - -1.1 595,908 - +0.2 595,908 - -1.4 595,908 - +1.7 595,924 - -1.4 595,926 - +2.3 596,207 - marA JDDGAC_03585 0.13 +0.5 596,305 - marA JDDGAC_03585 0.39 +0.8 596,516 - -0.6 596,653 - marR JDDGAC_03590 0.22 +0.3 596,653 - marR JDDGAC_03590 0.22 +0.1 596,775 - marR JDDGAC_03590 0.50 +1.2 596,775 - marR JDDGAC_03590 0.50 -0.5 596,775 - marR JDDGAC_03590 0.50 +2.4
Or see this region's nucleotide sequence