Experiment: WM_Bas58
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_00515 and JDDGAC_00520 are separated by 6 nucleotides JDDGAC_00520 and JDDGAC_00525 are separated by 72 nucleotides JDDGAC_00525 and JDDGAC_00540 are separated by 322 nucleotides JDDGAC_00540 and marR overlap by 4 nucleotides marR and JDDGAC_00550 overlap by 4 nucleotides
JDDGAC_00515: JDDGAC_00515 - replication protein, at 87,015 to 89,837
_00515
JDDGAC_00520: JDDGAC_00520 - Phage protein, at 89,844 to 90,209
_00520
JDDGAC_00525: JDDGAC_00525 - derepression protein, at 90,282 to 90,512
_00525
JDDGAC_00540: JDDGAC_00540 - hypothetical protein, at 90,835 to 91,134
_00540
JDDGAC_00545: marR - MarR family transcriptional regulator, at 91,131 to 91,397
marR
JDDGAC_00550: JDDGAC_00550 - hypothetical protein, at 91,394 to 91,597
_00550
Position (kb) 90
91 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 89.296 kb on - strand, within JDDGAC_00515 at 89.324 kb on - strand, within JDDGAC_00515 at 89.824 kb on + strand at 89.838 kb on - strand at 89.990 kb on - strand, within JDDGAC_00520 at 89.990 kb on - strand, within JDDGAC_00520 at 90.037 kb on + strand, within JDDGAC_00520 at 90.125 kb on - strand, within JDDGAC_00520 at 90.134 kb on - strand, within JDDGAC_00520 at 90.283 kb on + strand at 90.284 kb on - strand at 90.364 kb on + strand, within JDDGAC_00525 at 90.364 kb on + strand, within JDDGAC_00525 at 90.585 kb on - strand at 90.585 kb on - strand at 90.686 kb on - strand at 90.836 kb on + strand at 90.836 kb on + strand at 91.161 kb on - strand, within marR at 91.172 kb on + strand, within marR at 91.310 kb on + strand, within marR at 91.459 kb on - strand, within JDDGAC_00550
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas58 remove 89,296 - JDDGAC_00515 0.81 +2.3 89,324 - JDDGAC_00515 0.82 -2.1 89,824 + -0.3 89,838 - -0.5 89,990 - JDDGAC_00520 0.40 -4.7 89,990 - JDDGAC_00520 0.40 -0.7 90,037 + JDDGAC_00520 0.53 +1.3 90,125 - JDDGAC_00520 0.77 +0.2 90,134 - JDDGAC_00520 0.79 -1.2 90,283 + -0.3 90,284 - +0.1 90,364 + JDDGAC_00525 0.35 -0.4 90,364 + JDDGAC_00525 0.35 -1.4 90,585 - -2.9 90,585 - -1.1 90,686 - +2.3 90,836 + -0.8 90,836 + -0.5 91,161 - marR JDDGAC_00545 0.11 -0.9 91,172 + marR JDDGAC_00545 0.15 -0.5 91,310 + marR JDDGAC_00545 0.67 -0.3 91,459 - JDDGAC_00550 0.32 +0.9
Or see this region's nucleotide sequence