Experiment: WM_Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hypD and hypC overlap by 1 nucleotides hypC and hypB overlap by 10 nucleotides hypB and hypA are separated by 3 nucleotides
JDDGAC_24215: hypD - hydrogenase formation protein HypD, at 4,643,487 to 4,644,608
hypD
JDDGAC_24220: hypC - hydrogenase 3 maturation protein HypC, at 4,644,608 to 4,644,880
hypC
JDDGAC_24225: hypB - hydrogenase nickel incorporation protein HypB, at 4,644,871 to 4,645,743
hypB
JDDGAC_24230: hypA - hydrogenase maturation nickel metallochaperone HypA, at 4,645,747 to 4,646,097
hypA
Position (kb) 4644
4645 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4643.615 kb on + strand, within hypD at 4643.859 kb on + strand, within hypD at 4643.914 kb on - strand, within hypD at 4643.978 kb on - strand, within hypD at 4643.999 kb on + strand, within hypD at 4644.000 kb on - strand, within hypD at 4644.000 kb on - strand, within hypD at 4644.003 kb on - strand, within hypD at 4644.003 kb on - strand, within hypD at 4644.080 kb on + strand, within hypD at 4644.080 kb on + strand, within hypD at 4644.081 kb on - strand, within hypD at 4644.083 kb on + strand, within hypD at 4644.083 kb on + strand, within hypD at 4644.083 kb on + strand, within hypD at 4644.084 kb on - strand, within hypD at 4644.101 kb on - strand, within hypD at 4644.523 kb on + strand at 4644.624 kb on + strand at 4644.624 kb on + strand at 4644.625 kb on - strand at 4644.704 kb on - strand, within hypC at 4644.704 kb on - strand, within hypC at 4644.707 kb on + strand, within hypC at 4644.707 kb on + strand, within hypC at 4645.062 kb on + strand, within hypB at 4645.063 kb on - strand, within hypB at 4645.153 kb on + strand, within hypB at 4645.154 kb on - strand, within hypB at 4645.614 kb on + strand, within hypB at 4645.615 kb on - strand, within hypB at 4645.665 kb on + strand at 4645.686 kb on + strand at 4645.706 kb on + strand at 4645.706 kb on + strand at 4645.706 kb on + strand at 4645.737 kb on + strand at 4645.738 kb on - strand at 4645.738 kb on - strand at 4645.759 kb on + strand at 4645.760 kb on - strand at 4645.765 kb on + strand at 4645.765 kb on + strand at 4645.804 kb on + strand, within hypA at 4645.804 kb on + strand, within hypA at 4645.863 kb on - strand, within hypA at 4645.863 kb on - strand, within hypA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas61 remove 4,643,615 + hypD JDDGAC_24215 0.11 -2.5 4,643,859 + hypD JDDGAC_24215 0.33 -1.5 4,643,914 - hypD JDDGAC_24215 0.38 +1.3 4,643,978 - hypD JDDGAC_24215 0.44 +0.4 4,643,999 + hypD JDDGAC_24215 0.46 -1.9 4,644,000 - hypD JDDGAC_24215 0.46 +0.4 4,644,000 - hypD JDDGAC_24215 0.46 -0.6 4,644,003 - hypD JDDGAC_24215 0.46 -0.1 4,644,003 - hypD JDDGAC_24215 0.46 -1.4 4,644,080 + hypD JDDGAC_24215 0.53 -1.1 4,644,080 + hypD JDDGAC_24215 0.53 +0.4 4,644,081 - hypD JDDGAC_24215 0.53 -0.7 4,644,083 + hypD JDDGAC_24215 0.53 -0.4 4,644,083 + hypD JDDGAC_24215 0.53 +0.6 4,644,083 + hypD JDDGAC_24215 0.53 +0.7 4,644,084 - hypD JDDGAC_24215 0.53 -2.7 4,644,101 - hypD JDDGAC_24215 0.55 +0.6 4,644,523 + +0.8 4,644,624 + -0.3 4,644,624 + +2.2 4,644,625 - +0.5 4,644,704 - hypC JDDGAC_24220 0.35 -1.4 4,644,704 - hypC JDDGAC_24220 0.35 -0.8 4,644,707 + hypC JDDGAC_24220 0.36 -2.0 4,644,707 + hypC JDDGAC_24220 0.36 -0.6 4,645,062 + hypB JDDGAC_24225 0.22 -0.4 4,645,063 - hypB JDDGAC_24225 0.22 +1.0 4,645,153 + hypB JDDGAC_24225 0.32 +0.9 4,645,154 - hypB JDDGAC_24225 0.32 -1.0 4,645,614 + hypB JDDGAC_24225 0.85 -0.3 4,645,615 - hypB JDDGAC_24225 0.85 +0.8 4,645,665 + +0.0 4,645,686 + +0.8 4,645,706 + +1.1 4,645,706 + -1.8 4,645,706 + -0.5 4,645,737 + +1.0 4,645,738 - +0.9 4,645,738 - +0.5 4,645,759 + +0.6 4,645,760 - -0.3 4,645,765 + +1.1 4,645,765 + +0.2 4,645,804 + hypA JDDGAC_24230 0.16 -0.5 4,645,804 + hypA JDDGAC_24230 0.16 +0.3 4,645,863 - hypA JDDGAC_24230 0.33 -0.2 4,645,863 - hypA JDDGAC_24230 0.33 +0.1
Or see this region's nucleotide sequence