Strain Fitness in Escherichia coli ECRC98 around JDDGAC_08845

Experiment: WM_Bas61

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_Bas61
1,543,626	+				+0.6
1,543,749	+				-1.6
1,543,749	+				-1.3
1,543,749	+				+1.6
1,543,749	+				+0.8
1,543,750	-				-2.2
1,543,754	-				-0.9
1,543,766	-				-1.1
1,543,833	+	sulA	JDDGAC_08840	0.16	-0.3
1,543,834	-	sulA	JDDGAC_08840	0.16	+0.5
1,543,862	-	sulA	JDDGAC_08840	0.22	-0.3
1,544,164	-	sulA	JDDGAC_08840	0.81	-0.2
1,544,181	+	sulA	JDDGAC_08840	0.85	+0.7
1,544,181	+	sulA	JDDGAC_08840	0.85	+0.5
1,544,182	-	sulA	JDDGAC_08840	0.85	-1.4
1,544,258	-				-0.0
1,544,402	+				+0.1
1,544,402	+				-0.6
1,544,407	+				-0.3
1,544,408	-				+1.0
1,544,408	-				+0.4
1,544,409	+				+0.9
1,544,409	+				-0.7
1,544,410	-				-1.2
1,544,464	-				-0.8
1,544,470	+				-0.4
1,544,470	+				+0.6
1,544,478	-				-1.1
1,544,523	+				+0.6
1,544,523	+				-1.3
1,544,524	-				+0.1
1,544,527	-				-1.3
1,544,564	-				-2.1
1,544,577	+				-0.7
1,544,690	+				+0.9
1,544,700	+				+1.1
1,544,730	+	ompA	JDDGAC_08845	0.11	-1.3
1,544,730	+	ompA	JDDGAC_08845	0.11	-1.1
1,544,865	+	ompA	JDDGAC_08845	0.24	-1.6
1,544,958	+	ompA	JDDGAC_08845	0.33	-0.9
1,544,958	+	ompA	JDDGAC_08845	0.33	-1.0
1,544,958	+	ompA	JDDGAC_08845	0.33	-1.4
1,544,980	+	ompA	JDDGAC_08845	0.35	-0.9
1,545,099	+	ompA	JDDGAC_08845	0.46	-1.3
1,545,211	+	ompA	JDDGAC_08845	0.57	+0.1
1,545,244	+	ompA	JDDGAC_08845	0.60	+0.5
1,545,379	+	ompA	JDDGAC_08845	0.73	-1.3
1,545,465	+	ompA	JDDGAC_08845	0.82	-0.6
1,545,617	+				-0.5
1,545,654	+				-0.7
1,545,654	+				-1.5
1,545,654	+				+2.4
1,545,921	-	matP	JDDGAC_08850	0.42	-1.8
1,546,002	-	matP	JDDGAC_08850	0.60	-0.5
1,546,024	-	matP	JDDGAC_08850	0.64	-0.4
1,546,090	-	matP	JDDGAC_08850	0.79	+0.5
1,546,090	-	matP	JDDGAC_08850	0.79	+0.5
1,546,094	-	matP	JDDGAC_08850	0.80	-1.0
1,546,136	-	matP	JDDGAC_08850	0.89	-0.7
1,546,178	-				+0.6
1,546,288	+				+0.1
1,546,304	+				-0.3
1,546,305	-				-0.9
1,546,421	+				-1.5
1,546,421	+				+0.3
1,546,470	+				+0.7
1,546,544	-				+1.0
1,546,574	+	ycbZ	JDDGAC_08855	0.12	-0.7
1,546,585	+	ycbZ	JDDGAC_08855	0.12	+0.2
1,546,586	-	ycbZ	JDDGAC_08855	0.12	-1.1