Experiment: WM_Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_04325 and nleC are separated by 53 nucleotides nleC and JDDGAC_04335 are separated by 429 nucleotides JDDGAC_04335 and JDDGAC_04340 are separated by 1 nucleotides
JDDGAC_04325: JDDGAC_04325 - peptidase M85, at 767,326 to 767,568
_04325
JDDGAC_04330: nleC - type III secretion system effector zinc metalloprotease NleC, at 767,622 to 768,317
nleC
JDDGAC_04335: JDDGAC_04335 - phage tail protein, at 768,747 to 769,016
_04335
JDDGAC_04340: JDDGAC_04340 - phage tail protein, at 769,018 to 770,331
_04340
Position (kb) 767
768
769 Strain fitness (log2 ratio) -2
-1
0
1
2 at 766.675 kb on - strand at 766.677 kb on - strand at 766.962 kb on + strand at 767.013 kb on + strand at 767.087 kb on - strand at 767.128 kb on - strand at 767.206 kb on - strand at 767.235 kb on - strand at 767.239 kb on - strand at 767.239 kb on - strand at 767.244 kb on - strand at 767.282 kb on - strand at 767.285 kb on + strand at 767.286 kb on - strand at 767.291 kb on + strand at 767.305 kb on - strand at 767.362 kb on - strand, within JDDGAC_04325 at 767.364 kb on - strand, within JDDGAC_04325 at 767.395 kb on + strand, within JDDGAC_04325 at 767.599 kb on + strand at 767.715 kb on + strand, within nleC at 767.840 kb on - strand, within nleC at 767.912 kb on - strand, within nleC at 768.021 kb on - strand, within nleC at 768.317 kb on + strand at 768.324 kb on - strand at 768.675 kb on - strand at 768.685 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas61 remove 766,675 - +0.6 766,677 - -2.7 766,962 + -1.2 767,013 + +0.1 767,087 - +0.7 767,128 - -0.2 767,206 - -1.1 767,235 - -0.9 767,239 - -0.2 767,239 - -0.7 767,244 - +2.3 767,282 - -1.0 767,285 + -0.0 767,286 - -0.2 767,291 + +0.6 767,305 - -0.0 767,362 - JDDGAC_04325 0.15 -0.9 767,364 - JDDGAC_04325 0.16 +0.0 767,395 + JDDGAC_04325 0.28 -0.3 767,599 + -0.7 767,715 + nleC JDDGAC_04330 0.13 -0.6 767,840 - nleC JDDGAC_04330 0.31 -1.6 767,912 - nleC JDDGAC_04330 0.42 -0.4 768,021 - nleC JDDGAC_04330 0.57 -0.8 768,317 + -0.3 768,324 - -0.8 768,675 - -1.8 768,685 + +0.0
Or see this region's nucleotide sequence