Experiment: WM_Bas61
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dgcP and yoaF are separated by 182 nucleotides yoaF and yeaO are separated by 21 nucleotides yeaO and nimT are separated by 54 nucleotides
JDDGAC_01235: dgcP - diguanylate cyclase DgcP, at 208,894 to 209,919
dgcP
JDDGAC_01240: yoaF - DUF333 domain-containing protein, at 210,102 to 210,356
yoaF
JDDGAC_01245: yeaO - Uncharacterized protein YeaO, at 210,378 to 210,725
yeaO
JDDGAC_01250: nimT - 2-nitroimidazole transporter, at 210,780 to 211,961
nimT
Position (kb) 210
211 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 209.486 kb on - strand, within dgcP at 209.626 kb on - strand, within dgcP at 209.760 kb on + strand, within dgcP at 209.760 kb on + strand, within dgcP at 209.761 kb on - strand, within dgcP at 209.761 kb on - strand, within dgcP at 209.761 kb on - strand, within dgcP at 209.936 kb on - strand at 209.959 kb on + strand at 209.977 kb on + strand at 210.086 kb on + strand at 210.086 kb on + strand at 210.087 kb on - strand at 210.087 kb on - strand at 210.371 kb on - strand at 210.386 kb on + strand at 210.386 kb on + strand at 210.386 kb on + strand at 210.386 kb on + strand at 210.386 kb on + strand at 210.386 kb on + strand at 210.390 kb on + strand at 210.523 kb on + strand, within yeaO at 210.719 kb on + strand at 210.766 kb on + strand at 210.768 kb on + strand at 210.768 kb on + strand at 210.769 kb on - strand at 210.769 kb on - strand at 210.831 kb on + strand at 210.889 kb on - strand at 211.128 kb on - strand, within nimT at 211.153 kb on - strand, within nimT at 211.191 kb on + strand, within nimT at 211.192 kb on - strand, within nimT at 211.279 kb on + strand, within nimT at 211.282 kb on + strand, within nimT at 211.283 kb on - strand, within nimT at 211.356 kb on + strand, within nimT at 211.356 kb on + strand, within nimT at 211.356 kb on + strand, within nimT at 211.357 kb on - strand, within nimT at 211.370 kb on + strand, within nimT at 211.608 kb on - strand, within nimT at 211.657 kb on + strand, within nimT at 211.658 kb on - strand, within nimT
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas61 remove 209,486 - dgcP JDDGAC_01235 0.58 +0.2 209,626 - dgcP JDDGAC_01235 0.71 -1.6 209,760 + dgcP JDDGAC_01235 0.84 -0.2 209,760 + dgcP JDDGAC_01235 0.84 +0.8 209,761 - dgcP JDDGAC_01235 0.85 -1.2 209,761 - dgcP JDDGAC_01235 0.85 -1.8 209,761 - dgcP JDDGAC_01235 0.85 -1.1 209,936 - -0.4 209,959 + -1.0 209,977 + +0.5 210,086 + -0.7 210,086 + -0.1 210,087 - -0.4 210,087 - +0.1 210,371 - +2.1 210,386 + -1.7 210,386 + -0.6 210,386 + -0.4 210,386 + +3.1 210,386 + -1.9 210,386 + -1.4 210,390 + +0.5 210,523 + yeaO JDDGAC_01245 0.42 -1.9 210,719 + -0.7 210,766 + -0.3 210,768 + -1.0 210,768 + +0.2 210,769 - -2.1 210,769 - -0.4 210,831 + +2.1 210,889 - -1.5 211,128 - nimT JDDGAC_01250 0.29 +0.9 211,153 - nimT JDDGAC_01250 0.32 +0.4 211,191 + nimT JDDGAC_01250 0.35 -1.1 211,192 - nimT JDDGAC_01250 0.35 -0.5 211,279 + nimT JDDGAC_01250 0.42 -1.4 211,282 + nimT JDDGAC_01250 0.42 -3.1 211,283 - nimT JDDGAC_01250 0.43 -0.0 211,356 + nimT JDDGAC_01250 0.49 +0.6 211,356 + nimT JDDGAC_01250 0.49 +0.7 211,356 + nimT JDDGAC_01250 0.49 -0.4 211,357 - nimT JDDGAC_01250 0.49 -1.4 211,370 + nimT JDDGAC_01250 0.50 -1.4 211,608 - nimT JDDGAC_01250 0.70 +0.5 211,657 + nimT JDDGAC_01250 0.74 +0.7 211,658 - nimT JDDGAC_01250 0.74 +3.3
Or see this region's nucleotide sequence