Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS19150

Experiment: defined media with D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS19140 and LRK53_RS19145 overlap by 4 nucleotidesLRK53_RS19145 and LRK53_RS19150 are separated by 93 nucleotidesLRK53_RS19150 and LRK53_RS19155 are separated by 242 nucleotides LRK53_RS19140: LRK53_RS19140 - hypothetical protein, at 211,417 to 211,875 _RS19140 LRK53_RS19145: LRK53_RS19145 - hypothetical protein, at 211,872 to 212,369 _RS19145 LRK53_RS19150: LRK53_RS19150 - hypothetical protein, at 212,463 to 213,278 _RS19150 LRK53_RS19155: LRK53_RS19155 - hypothetical protein, at 213,521 to 214,360 _RS19155 Position (kb) 212 213 214Strain fitness (log2 ratio) -2 -1 0 1 2at 211.488 kb on + strand, within LRK53_RS19140at 211.488 kb on + strand, within LRK53_RS19140at 211.488 kb on + strand, within LRK53_RS19140at 211.489 kb on - strand, within LRK53_RS19140at 211.572 kb on + strand, within LRK53_RS19140at 211.829 kb on + strand, within LRK53_RS19140at 211.971 kb on + strand, within LRK53_RS19145at 211.971 kb on + strand, within LRK53_RS19145at 211.971 kb on + strand, within LRK53_RS19145at 211.971 kb on + strand, within LRK53_RS19145at 211.972 kb on - strand, within LRK53_RS19145at 211.972 kb on - strand, within LRK53_RS19145at 211.972 kb on - strand, within LRK53_RS19145at 211.972 kb on - strand, within LRK53_RS19145at 211.972 kb on - strand, within LRK53_RS19145at 211.972 kb on - strand, within LRK53_RS19145at 211.973 kb on + strand, within LRK53_RS19145at 212.008 kb on + strand, within LRK53_RS19145at 212.009 kb on - strand, within LRK53_RS19145at 212.041 kb on + strand, within LRK53_RS19145at 212.044 kb on + strand, within LRK53_RS19145at 212.044 kb on + strand, within LRK53_RS19145at 212.045 kb on - strand, within LRK53_RS19145at 212.045 kb on - strand, within LRK53_RS19145at 212.045 kb on - strand, within LRK53_RS19145at 212.045 kb on - strand, within LRK53_RS19145at 212.045 kb on - strand, within LRK53_RS19145at 212.057 kb on + strand, within LRK53_RS19145at 212.057 kb on + strand, within LRK53_RS19145at 212.057 kb on + strand, within LRK53_RS19145at 212.298 kb on + strand, within LRK53_RS19145at 212.298 kb on + strand, within LRK53_RS19145at 212.298 kb on + strand, within LRK53_RS19145at 212.298 kb on + strand, within LRK53_RS19145at 212.298 kb on + strand, within LRK53_RS19145at 212.299 kb on - strand, within LRK53_RS19145at 212.307 kb on + strand, within LRK53_RS19145at 212.307 kb on + strand, within LRK53_RS19145at 212.307 kb on + strand, within LRK53_RS19145at 212.307 kb on + strand, within LRK53_RS19145at 212.307 kb on + strand, within LRK53_RS19145at 212.308 kb on - strand, within LRK53_RS19145at 212.574 kb on + strand, within LRK53_RS19150at 212.574 kb on + strand, within LRK53_RS19150at 212.574 kb on + strand, within LRK53_RS19150at 212.574 kb on + strand, within LRK53_RS19150at 212.575 kb on - strand, within LRK53_RS19150at 212.575 kb on - strand, within LRK53_RS19150at 212.817 kb on + strand, within LRK53_RS19150at 212.817 kb on + strand, within LRK53_RS19150at 212.817 kb on + strand, within LRK53_RS19150at 212.818 kb on - strand, within LRK53_RS19150at 212.818 kb on - strand, within LRK53_RS19150at 212.818 kb on - strand, within LRK53_RS19150at 212.818 kb on - strand, within LRK53_RS19150at 212.818 kb on - strand, within LRK53_RS19150at 212.928 kb on + strand, within LRK53_RS19150at 212.929 kb on - strand, within LRK53_RS19150at 212.929 kb on - strand, within LRK53_RS19150at 213.135 kb on + strand, within LRK53_RS19150at 213.136 kb on - strand, within LRK53_RS19150at 213.136 kb on - strand, within LRK53_RS19150at 213.158 kb on - strand, within LRK53_RS19150at 213.168 kb on + strand, within LRK53_RS19150at 213.334 kb on + strandat 213.334 kb on + strandat 213.334 kb on + strandat 213.334 kb on + strandat 213.335 kb on - strandat 213.335 kb on - strandat 213.335 kb on - strandat 213.335 kb on - strandat 213.335 kb on - strandat 213.335 kb on - strandat 213.335 kb on - strandat 213.335 kb on - strandat 213.335 kb on - strandat 213.483 kb on + strandat 213.484 kb on - strandat 213.518 kb on + strandat 213.518 kb on + strandat 213.518 kb on + strandat 213.518 kb on + strandat 213.518 kb on + strandat 213.518 kb on + strandat 213.518 kb on + strandat 213.518 kb on + strandat 213.518 kb on + strandat 213.518 kb on + strandat 213.518 kb on + strandat 213.518 kb on + strandat 213.518 kb on + strandat 213.519 kb on - strandat 213.519 kb on - strandat 213.519 kb on - strandat 213.519 kb on - strandat 213.519 kb on - strandat 213.519 kb on - strandat 213.519 kb on - strandat 213.519 kb on - strandat 213.519 kb on - strandat 213.519 kb on - strandat 213.519 kb on - strandat 213.519 kb on - strandat 213.519 kb on - strandat 213.519 kb on - strandat 213.519 kb on - strandat 213.519 kb on - strandat 213.519 kb on - strandat 213.519 kb on - strandat 213.519 kb on - strandat 213.519 kb on - strandat 213.519 kb on - strandat 213.519 kb on - strandat 213.519 kb on - strandat 213.519 kb on - strandat 213.519 kb on - strandat 213.556 kb on - strandat 213.556 kb on - strandat 213.728 kb on + strand, within LRK53_RS19155at 213.728 kb on + strand, within LRK53_RS19155at 213.837 kb on - strand, within LRK53_RS19155at 213.874 kb on + strand, within LRK53_RS19155at 213.875 kb on - strand, within LRK53_RS19155at 214.069 kb on + strand, within LRK53_RS19155at 214.069 kb on + strand, within LRK53_RS19155at 214.070 kb on - strand, within LRK53_RS19155

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with D-Glucose
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211,488 + LRK53_RS19140 0.15 +0.4
211,488 + LRK53_RS19140 0.15 -0.6
211,488 + LRK53_RS19140 0.15 -1.2
211,489 - LRK53_RS19140 0.16 +0.1
211,572 + LRK53_RS19140 0.34 -0.2
211,829 + LRK53_RS19140 0.90 -0.6
211,971 + LRK53_RS19145 0.20 -0.6
211,971 + LRK53_RS19145 0.20 -0.2
211,971 + LRK53_RS19145 0.20 -1.2
211,971 + LRK53_RS19145 0.20 +2.4
211,972 - LRK53_RS19145 0.20 -0.9
211,972 - LRK53_RS19145 0.20 +0.1
211,972 - LRK53_RS19145 0.20 -1.2
211,972 - LRK53_RS19145 0.20 -0.2
211,972 - LRK53_RS19145 0.20 -0.6
211,972 - LRK53_RS19145 0.20 -1.6
211,973 + LRK53_RS19145 0.20 -1.4
212,008 + LRK53_RS19145 0.27 -1.9
212,009 - LRK53_RS19145 0.28 +0.4
212,041 + LRK53_RS19145 0.34 -1.4
212,044 + LRK53_RS19145 0.35 -1.2
212,044 + LRK53_RS19145 0.35 +2.0
212,045 - LRK53_RS19145 0.35 -1.2
212,045 - LRK53_RS19145 0.35 -1.5
212,045 - LRK53_RS19145 0.35 -1.0
212,045 - LRK53_RS19145 0.35 +0.4
212,045 - LRK53_RS19145 0.35 -0.2
212,057 + LRK53_RS19145 0.37 -0.6
212,057 + LRK53_RS19145 0.37 -0.9
212,057 + LRK53_RS19145 0.37 -0.9
212,298 + LRK53_RS19145 0.86 -1.0
212,298 + LRK53_RS19145 0.86 -0.4
212,298 + LRK53_RS19145 0.86 +0.7
212,298 + LRK53_RS19145 0.86 -1.3
212,298 + LRK53_RS19145 0.86 +0.9
212,299 - LRK53_RS19145 0.86 +0.8
212,307 + LRK53_RS19145 0.87 -0.9
212,307 + LRK53_RS19145 0.87 +0.4
212,307 + LRK53_RS19145 0.87 -1.2
212,307 + LRK53_RS19145 0.87 -0.2
212,307 + LRK53_RS19145 0.87 -1.4
212,308 - LRK53_RS19145 0.88 -0.6
212,574 + LRK53_RS19150 0.14 -2.3
212,574 + LRK53_RS19150 0.14 -0.2
212,574 + LRK53_RS19150 0.14 -1.2
212,574 + LRK53_RS19150 0.14 +0.4
212,575 - LRK53_RS19150 0.14 -2.2
212,575 - LRK53_RS19150 0.14 -0.9
212,817 + LRK53_RS19150 0.43 -0.4
212,817 + LRK53_RS19150 0.43 -0.6
212,817 + LRK53_RS19150 0.43 -2.2
212,818 - LRK53_RS19150 0.44 -0.6
212,818 - LRK53_RS19150 0.44 -1.0
212,818 - LRK53_RS19150 0.44 +1.4
212,818 - LRK53_RS19150 0.44 -2.4
212,818 - LRK53_RS19150 0.44 -0.6
212,928 + LRK53_RS19150 0.57 -2.2
212,929 - LRK53_RS19150 0.57 -0.2
212,929 - LRK53_RS19150 0.57 +1.4
213,135 + LRK53_RS19150 0.82 -0.8
213,136 - LRK53_RS19150 0.82 -1.9
213,136 - LRK53_RS19150 0.82 -0.2
213,158 - LRK53_RS19150 0.85 -0.2
213,168 + LRK53_RS19150 0.86 -1.3
213,334 + +1.4
213,334 + -0.2
213,334 + -0.2
213,334 + -0.4
213,335 - +1.4
213,335 - -1.4
213,335 - -0.0
213,335 - +1.4
213,335 - -0.9
213,335 - -0.9
213,335 - +0.1
213,335 - +2.0
213,335 - +0.7
213,483 + -0.2
213,484 - +2.4
213,518 + +0.4
213,518 + -1.0
213,518 + -1.2
213,518 + +1.4
213,518 + -1.0
213,518 + -1.0
213,518 + -0.2
213,518 + +1.0
213,518 + -1.4
213,518 + +0.1
213,518 + -0.8
213,518 + +0.4
213,518 + +0.1
213,519 - -0.2
213,519 - -1.4
213,519 - +0.4
213,519 - +2.4
213,519 - +1.1
213,519 - -0.2
213,519 - +1.4
213,519 - -0.2
213,519 - -1.2
213,519 - -0.7
213,519 - -1.2
213,519 - -0.3
213,519 - +1.4
213,519 - -1.3
213,519 - +0.8
213,519 - -1.7
213,519 - +0.8
213,519 - -0.2
213,519 - +0.4
213,519 - -0.2
213,519 - -0.2
213,519 - +1.1
213,519 - +1.1
213,519 - +0.6
213,519 - -0.6
213,556 - -0.3
213,556 - -0.9
213,728 + LRK53_RS19155 0.25 +2.4
213,728 + LRK53_RS19155 0.25 +0.6
213,837 - LRK53_RS19155 0.38 +0.8
213,874 + LRK53_RS19155 0.42 -0.8
213,875 - LRK53_RS19155 0.42 -1.4
214,069 + LRK53_RS19155 0.65 -0.9
214,069 + LRK53_RS19155 0.65 -0.6
214,070 - LRK53_RS19155 0.65 +0.2

Or see this region's nucleotide sequence