Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08465

Experiment: defined media with D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS08460 and LRK53_RS08465 overlap by 4 nucleotidesLRK53_RS08465 and LRK53_RS08470 overlap by 4 nucleotides LRK53_RS08460: LRK53_RS08460 - histidinol dehydrogenase, at 1,900,727 to 1,902,025 _RS08460 LRK53_RS08465: LRK53_RS08465 - histidinol-phosphate transaminase, at 1,902,022 to 1,903,098 _RS08465 LRK53_RS08470: LRK53_RS08470 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 1,903,095 to 1,904,162 _RS08470 Position (kb) 1902 1903 1904Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1901.105 kb on + strand, within LRK53_RS08460at 1901.105 kb on + strand, within LRK53_RS08460at 1901.105 kb on + strand, within LRK53_RS08460at 1901.105 kb on + strand, within LRK53_RS08460at 1901.105 kb on + strand, within LRK53_RS08460at 1901.105 kb on + strand, within LRK53_RS08460at 1901.105 kb on + strand, within LRK53_RS08460at 1901.105 kb on + strand, within LRK53_RS08460at 1901.106 kb on - strand, within LRK53_RS08460at 1901.106 kb on - strand, within LRK53_RS08460at 1901.106 kb on - strand, within LRK53_RS08460at 1901.240 kb on + strand, within LRK53_RS08460at 1901.241 kb on - strand, within LRK53_RS08460at 1901.241 kb on - strand, within LRK53_RS08460at 1901.271 kb on + strand, within LRK53_RS08460at 1901.271 kb on + strand, within LRK53_RS08460at 1901.271 kb on + strand, within LRK53_RS08460at 1901.271 kb on + strand, within LRK53_RS08460at 1901.271 kb on + strand, within LRK53_RS08460at 1901.271 kb on + strand, within LRK53_RS08460at 1901.272 kb on - strand, within LRK53_RS08460at 1901.272 kb on - strand, within LRK53_RS08460at 1901.272 kb on - strand, within LRK53_RS08460at 1901.272 kb on - strand, within LRK53_RS08460at 1901.312 kb on + strand, within LRK53_RS08460at 1901.312 kb on + strand, within LRK53_RS08460at 1901.312 kb on + strand, within LRK53_RS08460at 1901.313 kb on - strand, within LRK53_RS08460at 1901.604 kb on + strand, within LRK53_RS08460at 1901.604 kb on + strand, within LRK53_RS08460at 1901.605 kb on - strand, within LRK53_RS08460at 1901.605 kb on - strand, within LRK53_RS08460at 1901.843 kb on + strand, within LRK53_RS08460at 1901.843 kb on + strand, within LRK53_RS08460at 1901.843 kb on + strand, within LRK53_RS08460at 1901.843 kb on + strand, within LRK53_RS08460at 1901.843 kb on + strand, within LRK53_RS08460at 1901.843 kb on + strand, within LRK53_RS08460at 1901.843 kb on + strand, within LRK53_RS08460at 1901.843 kb on + strand, within LRK53_RS08460at 1901.843 kb on + strand, within LRK53_RS08460at 1901.844 kb on - strand, within LRK53_RS08460at 1901.844 kb on - strand, within LRK53_RS08460at 1901.844 kb on - strand, within LRK53_RS08460at 1901.844 kb on - strand, within LRK53_RS08460at 1901.844 kb on - strand, within LRK53_RS08460at 1901.844 kb on - strand, within LRK53_RS08460at 1901.844 kb on - strand, within LRK53_RS08460at 1901.844 kb on - strand, within LRK53_RS08460at 1901.844 kb on - strand, within LRK53_RS08460at 1901.844 kb on - strand, within LRK53_RS08460at 1901.844 kb on - strand, within LRK53_RS08460at 1901.844 kb on - strand, within LRK53_RS08460at 1901.844 kb on - strand, within LRK53_RS08460at 1901.861 kb on + strand, within LRK53_RS08460at 1901.861 kb on + strand, within LRK53_RS08460at 1901.862 kb on - strand, within LRK53_RS08460at 1901.862 kb on - strand, within LRK53_RS08460at 1901.862 kb on - strand, within LRK53_RS08460at 1901.885 kb on + strand, within LRK53_RS08460at 1901.886 kb on - strand, within LRK53_RS08460at 1901.886 kb on - strand, within LRK53_RS08460at 1901.886 kb on - strand, within LRK53_RS08460at 1902.070 kb on + strandat 1902.070 kb on + strandat 1902.071 kb on - strandat 1902.220 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.346 kb on + strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.347 kb on - strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.571 kb on + strand, within LRK53_RS08465at 1902.572 kb on - strand, within LRK53_RS08465at 1902.572 kb on - strand, within LRK53_RS08465at 1902.572 kb on - strand, within LRK53_RS08465at 1902.572 kb on - strand, within LRK53_RS08465at 1902.572 kb on - strand, within LRK53_RS08465at 1902.572 kb on - strand, within LRK53_RS08465at 1902.638 kb on + strand, within LRK53_RS08465at 1902.638 kb on + strand, within LRK53_RS08465at 1902.638 kb on + strand, within LRK53_RS08465at 1902.639 kb on - strand, within LRK53_RS08465at 1902.639 kb on - strand, within LRK53_RS08465at 1902.639 kb on - strand, within LRK53_RS08465at 1902.639 kb on - strand, within LRK53_RS08465at 1902.639 kb on - strand, within LRK53_RS08465at 1903.061 kb on + strandat 1903.061 kb on + strandat 1903.061 kb on + strandat 1903.061 kb on + strandat 1903.062 kb on - strandat 1903.062 kb on - strandat 1903.062 kb on - strandat 1903.062 kb on - strandat 1903.062 kb on - strandat 1903.062 kb on - strandat 1903.173 kb on + strandat 1903.173 kb on + strandat 1903.174 kb on - strandat 1903.174 kb on - strandat 1903.174 kb on - strandat 1903.174 kb on - strandat 1903.183 kb on + strandat 1903.183 kb on + strandat 1903.183 kb on + strandat 1903.183 kb on + strandat 1903.184 kb on - strandat 1903.184 kb on - strandat 1903.184 kb on - strandat 1903.434 kb on + strand, within LRK53_RS08470at 1903.434 kb on + strand, within LRK53_RS08470at 1903.435 kb on - strand, within LRK53_RS08470at 1903.435 kb on - strand, within LRK53_RS08470at 1903.435 kb on - strand, within LRK53_RS08470at 1903.435 kb on - strand, within LRK53_RS08470at 1903.435 kb on - strand, within LRK53_RS08470at 1903.926 kb on + strand, within LRK53_RS08470at 1903.926 kb on + strand, within LRK53_RS08470at 1903.926 kb on + strand, within LRK53_RS08470at 1903.927 kb on - strand, within LRK53_RS08470at 1903.927 kb on - strand, within LRK53_RS08470

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with D-Glucose
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1,901,105 + LRK53_RS08460 0.29 -2.2
1,901,105 + LRK53_RS08460 0.29 -1.8
1,901,105 + LRK53_RS08460 0.29 -2.5
1,901,105 + LRK53_RS08460 0.29 -1.8
1,901,105 + LRK53_RS08460 0.29 -1.2
1,901,105 + LRK53_RS08460 0.29 -2.9
1,901,105 + LRK53_RS08460 0.29 -1.2
1,901,105 + LRK53_RS08460 0.29 -1.2
1,901,106 - LRK53_RS08460 0.29 -0.8
1,901,106 - LRK53_RS08460 0.29 -2.4
1,901,106 - LRK53_RS08460 0.29 -4.5
1,901,240 + LRK53_RS08460 0.39 -2.4
1,901,241 - LRK53_RS08460 0.40 +0.8
1,901,241 - LRK53_RS08460 0.40 -0.2
1,901,271 + LRK53_RS08460 0.42 -0.8
1,901,271 + LRK53_RS08460 0.42 -0.2
1,901,271 + LRK53_RS08460 0.42 -3.3
1,901,271 + LRK53_RS08460 0.42 -0.2
1,901,271 + LRK53_RS08460 0.42 -0.8
1,901,271 + LRK53_RS08460 0.42 -2.0
1,901,272 - LRK53_RS08460 0.42 -1.2
1,901,272 - LRK53_RS08460 0.42 -0.2
1,901,272 - LRK53_RS08460 0.42 -1.5
1,901,272 - LRK53_RS08460 0.42 -0.2
1,901,312 + LRK53_RS08460 0.45 -2.2
1,901,312 + LRK53_RS08460 0.45 -0.2
1,901,312 + LRK53_RS08460 0.45 -0.2
1,901,313 - LRK53_RS08460 0.45 -0.8
1,901,604 + LRK53_RS08460 0.68 -1.5
1,901,604 + LRK53_RS08460 0.68 -2.4
1,901,605 - LRK53_RS08460 0.68 -0.2
1,901,605 - LRK53_RS08460 0.68 -1.8
1,901,843 + LRK53_RS08460 0.86 -1.5
1,901,843 + LRK53_RS08460 0.86 -1.8
1,901,843 + LRK53_RS08460 0.86 -1.9
1,901,843 + LRK53_RS08460 0.86 -0.2
1,901,843 + LRK53_RS08460 0.86 -1.8
1,901,843 + LRK53_RS08460 0.86 -2.8
1,901,843 + LRK53_RS08460 0.86 -1.5
1,901,843 + LRK53_RS08460 0.86 -1.2
1,901,843 + LRK53_RS08460 0.86 -2.4
1,901,844 - LRK53_RS08460 0.86 +0.2
1,901,844 - LRK53_RS08460 0.86 -3.1
1,901,844 - LRK53_RS08460 0.86 +0.8
1,901,844 - LRK53_RS08460 0.86 -0.5
1,901,844 - LRK53_RS08460 0.86 -1.2
1,901,844 - LRK53_RS08460 0.86 -2.0
1,901,844 - LRK53_RS08460 0.86 -0.2
1,901,844 - LRK53_RS08460 0.86 -2.5
1,901,844 - LRK53_RS08460 0.86 -2.7
1,901,844 - LRK53_RS08460 0.86 -3.3
1,901,844 - LRK53_RS08460 0.86 -0.8
1,901,844 - LRK53_RS08460 0.86 -0.2
1,901,844 - LRK53_RS08460 0.86 -0.2
1,901,861 + LRK53_RS08460 0.87 -0.8
1,901,861 + LRK53_RS08460 0.87 -0.2
1,901,862 - LRK53_RS08460 0.87 -2.8
1,901,862 - LRK53_RS08460 0.87 +0.8
1,901,862 - LRK53_RS08460 0.87 -2.5
1,901,885 + LRK53_RS08460 0.89 -1.5
1,901,886 - LRK53_RS08460 0.89 -0.2
1,901,886 - LRK53_RS08460 0.89 -1.8
1,901,886 - LRK53_RS08460 0.89 -0.2
1,902,070 + -2.5
1,902,070 + -3.0
1,902,071 - +0.2
1,902,220 + LRK53_RS08465 0.18 -2.4
1,902,346 + LRK53_RS08465 0.30 -0.8
1,902,346 + LRK53_RS08465 0.30 -0.8
1,902,346 + LRK53_RS08465 0.30 -2.2
1,902,346 + LRK53_RS08465 0.30 -1.2
1,902,346 + LRK53_RS08465 0.30 -2.2
1,902,346 + LRK53_RS08465 0.30 -2.5
1,902,346 + LRK53_RS08465 0.30 -0.8
1,902,346 + LRK53_RS08465 0.30 -2.0
1,902,346 + LRK53_RS08465 0.30 -2.7
1,902,346 + LRK53_RS08465 0.30 +0.8
1,902,346 + LRK53_RS08465 0.30 -1.0
1,902,346 + LRK53_RS08465 0.30 +0.8
1,902,346 + LRK53_RS08465 0.30 -2.5
1,902,346 + LRK53_RS08465 0.30 -1.2
1,902,346 + LRK53_RS08465 0.30 -1.8
1,902,346 + LRK53_RS08465 0.30 -3.6
1,902,346 + LRK53_RS08465 0.30 -0.5
1,902,346 + LRK53_RS08465 0.30 -3.1
1,902,346 + LRK53_RS08465 0.30 -1.5
1,902,346 + LRK53_RS08465 0.30 -0.2
1,902,346 + LRK53_RS08465 0.30 -1.5
1,902,346 + LRK53_RS08465 0.30 -3.3
1,902,346 + LRK53_RS08465 0.30 +0.8
1,902,346 + LRK53_RS08465 0.30 -1.2
1,902,346 + LRK53_RS08465 0.30 -1.2
1,902,346 + LRK53_RS08465 0.30 -0.2
1,902,346 + LRK53_RS08465 0.30 -2.4
1,902,346 + LRK53_RS08465 0.30 -1.8
1,902,346 + LRK53_RS08465 0.30 +0.8
1,902,347 - LRK53_RS08465 0.30 -1.8
1,902,347 - LRK53_RS08465 0.30 -2.5
1,902,347 - LRK53_RS08465 0.30 -1.8
1,902,347 - LRK53_RS08465 0.30 -0.2
1,902,347 - LRK53_RS08465 0.30 -2.9
1,902,347 - LRK53_RS08465 0.30 -0.2
1,902,347 - LRK53_RS08465 0.30 -2.0
1,902,347 - LRK53_RS08465 0.30 -1.5
1,902,347 - LRK53_RS08465 0.30 -1.8
1,902,347 - LRK53_RS08465 0.30 -1.5
1,902,347 - LRK53_RS08465 0.30 -2.4
1,902,347 - LRK53_RS08465 0.30 -1.2
1,902,347 - LRK53_RS08465 0.30 -0.8
1,902,347 - LRK53_RS08465 0.30 -1.0
1,902,347 - LRK53_RS08465 0.30 -0.2
1,902,347 - LRK53_RS08465 0.30 -1.2
1,902,347 - LRK53_RS08465 0.30 -1.5
1,902,347 - LRK53_RS08465 0.30 -0.8
1,902,347 - LRK53_RS08465 0.30 -3.5
1,902,347 - LRK53_RS08465 0.30 -0.8
1,902,347 - LRK53_RS08465 0.30 -2.2
1,902,347 - LRK53_RS08465 0.30 -4.7
1,902,347 - LRK53_RS08465 0.30 -2.7
1,902,347 - LRK53_RS08465 0.30 -4.2
1,902,347 - LRK53_RS08465 0.30 -1.2
1,902,347 - LRK53_RS08465 0.30 -2.4
1,902,347 - LRK53_RS08465 0.30 -1.2
1,902,571 + LRK53_RS08465 0.51 -1.2
1,902,571 + LRK53_RS08465 0.51 -0.8
1,902,571 + LRK53_RS08465 0.51 -0.2
1,902,571 + LRK53_RS08465 0.51 -3.3
1,902,571 + LRK53_RS08465 0.51 -1.2
1,902,571 + LRK53_RS08465 0.51 -3.5
1,902,571 + LRK53_RS08465 0.51 -1.5
1,902,571 + LRK53_RS08465 0.51 -0.8
1,902,571 + LRK53_RS08465 0.51 -0.8
1,902,571 + LRK53_RS08465 0.51 -0.8
1,902,571 + LRK53_RS08465 0.51 -0.8
1,902,571 + LRK53_RS08465 0.51 -3.4
1,902,571 + LRK53_RS08465 0.51 -3.7
1,902,571 + LRK53_RS08465 0.51 -0.8
1,902,571 + LRK53_RS08465 0.51 -0.2
1,902,572 - LRK53_RS08465 0.51 -2.0
1,902,572 - LRK53_RS08465 0.51 -2.9
1,902,572 - LRK53_RS08465 0.51 -3.4
1,902,572 - LRK53_RS08465 0.51 -3.0
1,902,572 - LRK53_RS08465 0.51 -1.5
1,902,572 - LRK53_RS08465 0.51 -3.1
1,902,638 + LRK53_RS08465 0.57 -1.5
1,902,638 + LRK53_RS08465 0.57 -3.1
1,902,638 + LRK53_RS08465 0.57 -1.2
1,902,639 - LRK53_RS08465 0.57 -4.3
1,902,639 - LRK53_RS08465 0.57 -2.2
1,902,639 - LRK53_RS08465 0.57 -4.1
1,902,639 - LRK53_RS08465 0.57 -1.2
1,902,639 - LRK53_RS08465 0.57 -2.2
1,903,061 + -0.2
1,903,061 + -1.2
1,903,061 + +0.8
1,903,061 + +0.8
1,903,062 - +0.8
1,903,062 - -2.2
1,903,062 - -1.2
1,903,062 - -1.2
1,903,062 - -2.4
1,903,062 - -2.2
1,903,173 + -1.2
1,903,173 + -1.2
1,903,174 - -0.8
1,903,174 - -3.7
1,903,174 - -5.8
1,903,174 - -2.0
1,903,183 + -1.5
1,903,183 + -0.2
1,903,183 + -2.4
1,903,183 + -1.2
1,903,184 - -3.4
1,903,184 - -3.0
1,903,184 - -1.8
1,903,434 + LRK53_RS08470 0.32 -1.5
1,903,434 + LRK53_RS08470 0.32 -2.0
1,903,435 - LRK53_RS08470 0.32 -0.8
1,903,435 - LRK53_RS08470 0.32 -0.8
1,903,435 - LRK53_RS08470 0.32 +0.8
1,903,435 - LRK53_RS08470 0.32 -2.5
1,903,435 - LRK53_RS08470 0.32 -0.8
1,903,926 + LRK53_RS08470 0.78 +0.8
1,903,926 + LRK53_RS08470 0.78 -0.5
1,903,926 + LRK53_RS08470 0.78 -3.1
1,903,927 - LRK53_RS08470 0.78 -2.4
1,903,927 - LRK53_RS08470 0.78 -1.2

Or see this region's nucleotide sequence