Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS02450

Experiment: defined media with D-Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS02445 and LRK53_RS02450 are separated by 407 nucleotidesLRK53_RS02450 and LRK53_RS02455 are separated by 152 nucleotidesLRK53_RS02455 and LRK53_RS02460 are separated by 162 nucleotides LRK53_RS02445: LRK53_RS02445 - LacI family transcriptional regulator, at 562,735 to 563,763 _RS02445 LRK53_RS02450: LRK53_RS02450 - SPFH domain-containing protein, at 564,171 to 564,620 _RS02450 LRK53_RS02455: LRK53_RS02455 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 564,773 to 565,405 _RS02455 LRK53_RS02460: LRK53_RS02460 - GH1 family beta-glucosidase, at 565,568 to 566,923 _RS02460 Position (kb) 564 565Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 563.267 kb on + strand, within LRK53_RS02445at 563.279 kb on + strand, within LRK53_RS02445at 563.279 kb on + strand, within LRK53_RS02445at 563.279 kb on + strand, within LRK53_RS02445at 563.279 kb on + strand, within LRK53_RS02445at 563.280 kb on - strand, within LRK53_RS02445at 563.280 kb on - strand, within LRK53_RS02445at 563.280 kb on - strand, within LRK53_RS02445at 563.303 kb on + strand, within LRK53_RS02445at 563.304 kb on - strand, within LRK53_RS02445at 563.624 kb on + strand, within LRK53_RS02445at 563.624 kb on + strand, within LRK53_RS02445at 563.624 kb on + strand, within LRK53_RS02445at 563.624 kb on + strand, within LRK53_RS02445at 563.624 kb on + strand, within LRK53_RS02445at 563.624 kb on + strand, within LRK53_RS02445at 563.624 kb on + strand, within LRK53_RS02445at 563.624 kb on + strand, within LRK53_RS02445at 563.624 kb on + strand, within LRK53_RS02445at 563.625 kb on - strand, within LRK53_RS02445at 563.625 kb on - strand, within LRK53_RS02445at 563.625 kb on - strand, within LRK53_RS02445at 563.625 kb on - strand, within LRK53_RS02445at 563.737 kb on + strandat 563.737 kb on + strandat 563.737 kb on + strandat 563.737 kb on + strandat 563.835 kb on + strandat 563.836 kb on - strandat 563.836 kb on - strandat 563.836 kb on - strandat 563.836 kb on - strandat 563.846 kb on + strandat 563.846 kb on + strandat 563.846 kb on + strandat 563.846 kb on + strandat 563.846 kb on + strandat 563.846 kb on + strandat 563.846 kb on + strandat 563.847 kb on - strandat 563.847 kb on - strandat 563.847 kb on - strandat 563.847 kb on - strandat 563.847 kb on - strandat 563.847 kb on - strandat 564.056 kb on + strandat 564.056 kb on + strandat 564.057 kb on - strandat 564.057 kb on - strandat 564.076 kb on + strandat 564.088 kb on - strandat 564.113 kb on - strandat 564.154 kb on + strandat 564.154 kb on + strandat 564.154 kb on + strandat 564.155 kb on - strandat 564.155 kb on - strandat 564.181 kb on + strandat 564.181 kb on + strandat 564.255 kb on + strand, within LRK53_RS02450at 564.255 kb on + strand, within LRK53_RS02450at 564.256 kb on - strand, within LRK53_RS02450at 564.256 kb on - strand, within LRK53_RS02450at 564.256 kb on - strand, within LRK53_RS02450at 564.256 kb on - strand, within LRK53_RS02450at 564.256 kb on - strand, within LRK53_RS02450at 564.256 kb on - strand, within LRK53_RS02450at 564.256 kb on - strand, within LRK53_RS02450at 564.256 kb on - strand, within LRK53_RS02450at 564.264 kb on + strand, within LRK53_RS02450at 564.265 kb on - strand, within LRK53_RS02450at 564.303 kb on - strand, within LRK53_RS02450at 564.417 kb on + strand, within LRK53_RS02450at 564.417 kb on + strand, within LRK53_RS02450at 564.417 kb on + strand, within LRK53_RS02450at 564.417 kb on + strand, within LRK53_RS02450at 564.417 kb on + strand, within LRK53_RS02450at 564.417 kb on + strand, within LRK53_RS02450at 564.417 kb on + strand, within LRK53_RS02450at 564.418 kb on - strand, within LRK53_RS02450at 564.418 kb on - strand, within LRK53_RS02450at 564.418 kb on - strand, within LRK53_RS02450at 564.418 kb on - strand, within LRK53_RS02450at 564.418 kb on - strand, within LRK53_RS02450at 564.739 kb on + strandat 564.739 kb on + strandat 564.739 kb on + strandat 564.739 kb on + strandat 564.740 kb on - strandat 564.740 kb on - strandat 564.740 kb on - strandat 564.903 kb on - strand, within LRK53_RS02455at 564.903 kb on - strand, within LRK53_RS02455at 564.977 kb on + strand, within LRK53_RS02455at 564.978 kb on - strand, within LRK53_RS02455at 564.978 kb on - strand, within LRK53_RS02455at 565.473 kb on + strandat 565.473 kb on + strandat 565.473 kb on + strandat 565.473 kb on + strandat 565.474 kb on - strandat 565.474 kb on - strandat 565.474 kb on - strandat 565.474 kb on - strandat 565.611 kb on + strandat 565.611 kb on + strandat 565.611 kb on + strandat 565.611 kb on + strandat 565.611 kb on + strandat 565.611 kb on + strandat 565.611 kb on + strandat 565.611 kb on + strandat 565.611 kb on + strandat 565.611 kb on + strandat 565.611 kb on + strandat 565.612 kb on - strandat 565.612 kb on - strandat 565.612 kb on - strandat 565.612 kb on - strandat 565.612 kb on - strandat 565.612 kb on - strandat 565.612 kb on - strandat 565.612 kb on - strandat 565.612 kb on - strandat 565.612 kb on - strandat 565.612 kb on - strandat 565.612 kb on - strandat 565.612 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with D-Glucose
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563,267 + LRK53_RS02445 0.52 +2.0
563,279 + LRK53_RS02445 0.53 +1.0
563,279 + LRK53_RS02445 0.53 -0.0
563,279 + LRK53_RS02445 0.53 -0.6
563,279 + LRK53_RS02445 0.53 +0.7
563,280 - LRK53_RS02445 0.53 +2.6
563,280 - LRK53_RS02445 0.53 +1.3
563,280 - LRK53_RS02445 0.53 -0.3
563,303 + LRK53_RS02445 0.55 +1.0
563,304 - LRK53_RS02445 0.55 +1.0
563,624 + LRK53_RS02445 0.86 +0.3
563,624 + LRK53_RS02445 0.86 -1.3
563,624 + LRK53_RS02445 0.86 +1.4
563,624 + LRK53_RS02445 0.86 -1.0
563,624 + LRK53_RS02445 0.86 +1.0
563,624 + LRK53_RS02445 0.86 +1.3
563,624 + LRK53_RS02445 0.86 +0.4
563,624 + LRK53_RS02445 0.86 +1.0
563,624 + LRK53_RS02445 0.86 -0.3
563,625 - LRK53_RS02445 0.86 -0.6
563,625 - LRK53_RS02445 0.86 +0.5
563,625 - LRK53_RS02445 0.86 +0.2
563,625 - LRK53_RS02445 0.86 -0.2
563,737 + +1.6
563,737 + -0.0
563,737 + +3.0
563,737 + -0.3
563,835 + -0.6
563,836 - +1.0
563,836 - -1.3
563,836 - -1.0
563,836 - -1.5
563,846 + -0.6
563,846 + -1.3
563,846 + -0.7
563,846 + -0.0
563,846 + -0.0
563,846 + -2.4
563,846 + +0.4
563,847 - -1.2
563,847 - -3.1
563,847 - -2.2
563,847 - -0.6
563,847 - +0.4
563,847 - -1.0
564,056 + -2.0
564,056 + -0.0
564,057 - -1.5
564,057 - -2.0
564,076 + -1.2
564,088 - -1.0
564,113 - +2.0
564,154 + -0.2
564,154 + -1.0
564,154 + -0.2
564,155 - -0.0
564,155 - +1.0
564,181 + -1.3
564,181 + -0.3
564,255 + LRK53_RS02450 0.19 -1.0
564,255 + LRK53_RS02450 0.19 -1.0
564,256 - LRK53_RS02450 0.19 -1.0
564,256 - LRK53_RS02450 0.19 -1.0
564,256 - LRK53_RS02450 0.19 -0.6
564,256 - LRK53_RS02450 0.19 -1.0
564,256 - LRK53_RS02450 0.19 -1.4
564,256 - LRK53_RS02450 0.19 -0.6
564,256 - LRK53_RS02450 0.19 -0.0
564,256 - LRK53_RS02450 0.19 -1.0
564,264 + LRK53_RS02450 0.21 +1.0
564,265 - LRK53_RS02450 0.21 -0.6
564,303 - LRK53_RS02450 0.29 -0.0
564,417 + LRK53_RS02450 0.55 -0.0
564,417 + LRK53_RS02450 0.55 +2.0
564,417 + LRK53_RS02450 0.55 -0.4
564,417 + LRK53_RS02450 0.55 -0.6
564,417 + LRK53_RS02450 0.55 -0.6
564,417 + LRK53_RS02450 0.55 +0.4
564,417 + LRK53_RS02450 0.55 +1.0
564,418 - LRK53_RS02450 0.55 -1.3
564,418 - LRK53_RS02450 0.55 -2.9
564,418 - LRK53_RS02450 0.55 -2.2
564,418 - LRK53_RS02450 0.55 -2.5
564,418 - LRK53_RS02450 0.55 -2.7
564,739 + +1.0
564,739 + -2.7
564,739 + -1.0
564,739 + -0.7
564,740 - -1.6
564,740 - -1.0
564,740 - -0.8
564,903 - LRK53_RS02455 0.21 -1.1
564,903 - LRK53_RS02455 0.21 +1.0
564,977 + LRK53_RS02455 0.32 -0.0
564,978 - LRK53_RS02455 0.32 -1.7
564,978 - LRK53_RS02455 0.32 +0.4
565,473 + -0.6
565,473 + -0.6
565,473 + -1.0
565,473 + +0.1
565,474 - -0.2
565,474 - +0.3
565,474 - +0.4
565,474 - -2.2
565,611 + -0.6
565,611 + +1.0
565,611 + +1.0
565,611 + +1.4
565,611 + -0.6
565,611 + -0.0
565,611 + -0.0
565,611 + +0.4
565,611 + -0.0
565,611 + -0.6
565,611 + +2.0
565,612 - +1.2
565,612 - +2.0
565,612 - -0.0
565,612 - +0.5
565,612 - -0.2
565,612 - -0.6
565,612 - -1.3
565,612 - +2.0
565,612 - -0.1
565,612 - -0.0
565,612 - +2.0
565,612 - -0.9
565,612 - +1.0

Or see this region's nucleotide sequence