Experiment: defined media with D-Glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00935 and LRK53_RS00940 are separated by 151 nucleotides LRK53_RS00940 and LRK53_RS00945 are separated by 383 nucleotides LRK53_RS00945 and LRK53_RS00950 overlap by 8 nucleotides LRK53_RS00950 and LRK53_RS00955 are separated by 276 nucleotides
LRK53_RS00935: LRK53_RS00935 - monovalent cation/H(+) antiporter subunit G, at 235,859 to 236,212
_RS00935
LRK53_RS00940: LRK53_RS00940 - hypothetical protein, at 236,364 to 236,561
_RS00940
LRK53_RS00945: LRK53_RS00945 - helix-turn-helix domain-containing protein, at 236,945 to 238,063
_RS00945
LRK53_RS00950: LRK53_RS00950 - hypothetical protein, at 238,056 to 238,331
_RS00950
LRK53_RS00955: LRK53_RS00955 - IS200/IS605 family transposase, at 238,608 to 239,039
_RS00955
Position (kb) 236
237
238
239 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 235.976 kb on + strand, within LRK53_RS00935 at 235.976 kb on + strand, within LRK53_RS00935 at 235.977 kb on - strand, within LRK53_RS00935 at 236.082 kb on - strand, within LRK53_RS00935 at 236.082 kb on - strand, within LRK53_RS00935 at 236.142 kb on + strand, within LRK53_RS00935 at 236.156 kb on + strand, within LRK53_RS00935 at 236.156 kb on + strand, within LRK53_RS00935 at 236.157 kb on - strand, within LRK53_RS00935 at 236.210 kb on + strand at 236.280 kb on + strand at 236.280 kb on + strand at 236.280 kb on + strand at 236.280 kb on + strand at 236.280 kb on + strand at 236.281 kb on - strand at 236.281 kb on - strand at 236.281 kb on - strand at 236.281 kb on - strand at 236.281 kb on - strand at 236.281 kb on - strand at 236.353 kb on + strand at 236.353 kb on + strand at 236.353 kb on + strand at 236.353 kb on + strand at 236.353 kb on + strand at 236.354 kb on - strand at 236.354 kb on - strand at 236.354 kb on - strand at 236.354 kb on - strand at 236.468 kb on - strand, within LRK53_RS00940 at 236.506 kb on + strand, within LRK53_RS00940 at 236.698 kb on - strand at 236.698 kb on - strand at 236.698 kb on - strand at 236.698 kb on - strand at 236.698 kb on - strand at 236.698 kb on - strand at 236.750 kb on + strand at 236.750 kb on + strand at 236.750 kb on + strand at 236.750 kb on + strand at 236.750 kb on + strand at 236.750 kb on + strand at 236.750 kb on + strand at 236.750 kb on + strand at 236.750 kb on + strand at 236.750 kb on + strand at 236.750 kb on + strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.751 kb on - strand at 236.899 kb on - strand at 236.899 kb on - strand at 236.899 kb on - strand at 236.916 kb on + strand at 236.916 kb on + strand at 236.916 kb on + strand at 236.916 kb on + strand at 236.917 kb on - strand at 236.917 kb on - strand at 236.917 kb on - strand at 236.917 kb on - strand at 236.917 kb on - strand at 236.943 kb on + strand at 236.944 kb on - strand at 236.979 kb on - strand at 236.979 kb on - strand at 236.979 kb on - strand at 236.979 kb on - strand at 236.979 kb on - strand at 236.979 kb on - strand at 236.979 kb on - strand at 236.979 kb on - strand at 236.979 kb on - strand at 236.979 kb on - strand at 236.979 kb on - strand at 237.002 kb on + strand at 237.003 kb on - strand at 237.003 kb on - strand at 237.003 kb on - strand at 237.003 kb on - strand at 237.003 kb on - strand at 237.003 kb on - strand at 237.003 kb on - strand at 237.003 kb on - strand at 237.003 kb on - strand at 237.003 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.054 kb on - strand at 237.112 kb on + strand, within LRK53_RS00945 at 237.113 kb on - strand, within LRK53_RS00945 at 237.113 kb on - strand, within LRK53_RS00945 at 237.126 kb on - strand, within LRK53_RS00945 at 237.126 kb on - strand, within LRK53_RS00945 at 237.207 kb on - strand, within LRK53_RS00945 at 237.207 kb on - strand, within LRK53_RS00945 at 237.207 kb on - strand, within LRK53_RS00945 at 237.207 kb on - strand, within LRK53_RS00945 at 237.207 kb on - strand, within LRK53_RS00945 at 237.309 kb on - strand, within LRK53_RS00945 at 237.309 kb on - strand, within LRK53_RS00945 at 238.067 kb on - strand at 238.067 kb on - strand at 238.067 kb on - strand at 238.067 kb on - strand at 238.067 kb on - strand at 238.288 kb on + strand, within LRK53_RS00950 at 238.288 kb on + strand, within LRK53_RS00950 at 238.288 kb on + strand, within LRK53_RS00950 at 238.288 kb on + strand, within LRK53_RS00950 at 238.288 kb on + strand, within LRK53_RS00950 at 238.288 kb on + strand, within LRK53_RS00950 at 238.288 kb on + strand, within LRK53_RS00950 at 238.288 kb on + strand, within LRK53_RS00950 at 238.288 kb on + strand, within LRK53_RS00950 at 238.288 kb on + strand, within LRK53_RS00950 at 238.288 kb on + strand, within LRK53_RS00950 at 238.288 kb on + strand, within LRK53_RS00950 at 238.288 kb on + strand, within LRK53_RS00950 at 238.288 kb on + strand, within LRK53_RS00950 at 238.288 kb on + strand, within LRK53_RS00950 at 238.289 kb on - strand, within LRK53_RS00950 at 238.289 kb on - strand, within LRK53_RS00950 at 238.289 kb on - strand, within LRK53_RS00950 at 238.289 kb on - strand, within LRK53_RS00950 at 238.289 kb on - strand, within LRK53_RS00950 at 238.289 kb on - strand, within LRK53_RS00950 at 238.289 kb on - strand, within LRK53_RS00950 at 238.289 kb on - strand, within LRK53_RS00950 at 238.314 kb on + strand at 238.314 kb on + strand at 238.315 kb on - strand at 238.402 kb on + strand at 238.403 kb on - strand at 238.403 kb on - strand at 238.412 kb on + strand at 238.423 kb on + strand at 238.487 kb on - strand at 238.487 kb on - strand at 238.487 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with D-Glucose remove 235,976 + LRK53_RS00935 0.33 -0.4 235,976 + LRK53_RS00935 0.33 -2.9 235,977 - LRK53_RS00935 0.33 -0.4 236,082 - LRK53_RS00935 0.63 +0.1 236,082 - LRK53_RS00935 0.63 +1.1 236,142 + LRK53_RS00935 0.80 -0.4 236,156 + LRK53_RS00935 0.84 -1.0 236,156 + LRK53_RS00935 0.84 -0.4 236,157 - LRK53_RS00935 0.84 -0.4 236,210 + -0.4 236,280 + -0.8 236,280 + -1.6 236,280 + -1.4 236,280 + -0.6 236,280 + +1.7 236,281 - +0.1 236,281 - +0.1 236,281 - -0.7 236,281 - -1.3 236,281 - -1.7 236,281 - +1.7 236,353 + -2.8 236,353 + +0.1 236,353 + -2.9 236,353 + -0.0 236,353 + +1.1 236,354 - +1.1 236,354 - -0.7 236,354 - -0.4 236,354 - +2.1 236,468 - LRK53_RS00940 0.53 -0.6 236,506 + LRK53_RS00940 0.72 -1.4 236,698 - -0.5 236,698 - -0.9 236,698 - +0.6 236,698 - +1.1 236,698 - +1.1 236,698 - +0.1 236,750 + -0.4 236,750 + +1.6 236,750 + -0.4 236,750 + +1.1 236,750 + -0.9 236,750 + -0.9 236,750 + +1.4 236,750 + -0.7 236,750 + -0.3 236,750 + +0.1 236,750 + -0.4 236,751 - -1.2 236,751 - -0.4 236,751 - -1.4 236,751 - -0.3 236,751 - -0.6 236,751 - +0.6 236,751 - +0.1 236,751 - +2.1 236,751 - +1.9 236,751 - +1.6 236,751 - -1.2 236,751 - +0.1 236,751 - -1.0 236,751 - +0.1 236,751 - +0.1 236,899 - -0.9 236,899 - -0.4 236,899 - +1.1 236,916 + -0.4 236,916 + -0.2 236,916 + +0.8 236,916 + -1.4 236,917 - -2.0 236,917 - +1.1 236,917 - -0.9 236,917 - -0.4 236,917 - -0.0 236,943 + -0.2 236,944 - +0.7 236,979 - -0.9 236,979 - +1.1 236,979 - +0.1 236,979 - -2.0 236,979 - -0.4 236,979 - -0.9 236,979 - -1.0 236,979 - +0.1 236,979 - -1.8 236,979 - +0.6 236,979 - -0.1 237,002 + -1.3 237,003 - +0.0 237,003 - -1.7 237,003 - -0.2 237,003 - +0.3 237,003 - -1.7 237,003 - -0.7 237,003 - -0.4 237,003 - -0.2 237,003 - -1.9 237,003 - +2.7 237,054 - -2.6 237,054 - -1.2 237,054 - -0.9 237,054 - +2.1 237,054 - -0.4 237,054 - -0.4 237,054 - -2.0 237,054 - -1.4 237,054 - +0.1 237,054 - -0.4 237,054 - +0.1 237,054 - -2.7 237,054 - -1.2 237,054 - -1.2 237,054 - -0.9 237,054 - -1.4 237,054 - -1.7 237,054 - -1.2 237,054 - +1.1 237,112 + LRK53_RS00945 0.15 -0.9 237,113 - LRK53_RS00945 0.15 -0.9 237,113 - LRK53_RS00945 0.15 +0.6 237,126 - LRK53_RS00945 0.16 -2.4 237,126 - LRK53_RS00945 0.16 +0.6 237,207 - LRK53_RS00945 0.23 -2.2 237,207 - LRK53_RS00945 0.23 -0.9 237,207 - LRK53_RS00945 0.23 +0.6 237,207 - LRK53_RS00945 0.23 -0.9 237,207 - LRK53_RS00945 0.23 +0.6 237,309 - LRK53_RS00945 0.33 -0.4 237,309 - LRK53_RS00945 0.33 -0.4 238,067 - -1.1 238,067 - -1.2 238,067 - -0.9 238,067 - +1.1 238,067 - +1.1 238,288 + LRK53_RS00950 0.84 -1.0 238,288 + LRK53_RS00950 0.84 +1.1 238,288 + LRK53_RS00950 0.84 +0.6 238,288 + LRK53_RS00950 0.84 -0.9 238,288 + LRK53_RS00950 0.84 -1.2 238,288 + LRK53_RS00950 0.84 +0.3 238,288 + LRK53_RS00950 0.84 -0.2 238,288 + LRK53_RS00950 0.84 -0.4 238,288 + LRK53_RS00950 0.84 +2.1 238,288 + LRK53_RS00950 0.84 -0.3 238,288 + LRK53_RS00950 0.84 -0.4 238,288 + LRK53_RS00950 0.84 +2.1 238,288 + LRK53_RS00950 0.84 -1.6 238,288 + LRK53_RS00950 0.84 -0.3 238,288 + LRK53_RS00950 0.84 -0.4 238,289 - LRK53_RS00950 0.84 -0.2 238,289 - LRK53_RS00950 0.84 +0.1 238,289 - LRK53_RS00950 0.84 +0.6 238,289 - LRK53_RS00950 0.84 -0.4 238,289 - LRK53_RS00950 0.84 -0.0 238,289 - LRK53_RS00950 0.84 -0.1 238,289 - LRK53_RS00950 0.84 -1.0 238,289 - LRK53_RS00950 0.84 -2.0 238,314 + -0.9 238,314 + +0.7 238,315 - +0.1 238,402 + +2.1 238,403 - +0.6 238,403 - -0.4 238,412 + +0.1 238,423 + +2.7 238,487 - +0.1 238,487 - -2.4 238,487 - -1.2
Or see this region's nucleotide sequence