Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS02390

Experiment: defined media with L-Serine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS02380 and LRK53_RS02385 are separated by 7 nucleotidesLRK53_RS02385 and LRK53_RS02390 are separated by 83 nucleotidesLRK53_RS02390 and LRK53_RS02395 are separated by 163 nucleotidesLRK53_RS02395 and LRK53_RS02400 are separated by 222 nucleotides LRK53_RS02380: LRK53_RS02380 - hypothetical protein, at 546,984 to 547,532 _RS02380 LRK53_RS02385: LRK53_RS02385 - gamma carbonic anhydrase family protein, at 547,540 to 548,073 _RS02385 LRK53_RS02390: LRK53_RS02390 - M3 family metallopeptidase, at 548,157 to 550,214 _RS02390 LRK53_RS02395: LRK53_RS02395 - cold-shock protein, at 550,378 to 550,587 _RS02395 LRK53_RS02400: LRK53_RS02400 - exodeoxyribonuclease III, at 550,810 to 551,577 _RS02400 Position (kb) 548 549 550 551Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 547.251 kb on + strand, within LRK53_RS02380at 547.251 kb on + strand, within LRK53_RS02380at 547.251 kb on + strand, within LRK53_RS02380at 547.251 kb on + strand, within LRK53_RS02380at 547.251 kb on + strand, within LRK53_RS02380at 547.251 kb on + strand, within LRK53_RS02380at 547.251 kb on + strand, within LRK53_RS02380at 547.533 kb on + strandat 547.556 kb on + strandat 547.556 kb on + strandat 547.556 kb on + strandat 547.557 kb on - strandat 547.557 kb on - strandat 547.557 kb on - strandat 547.557 kb on - strandat 547.557 kb on - strandat 547.577 kb on + strandat 547.577 kb on + strandat 547.577 kb on + strandat 547.577 kb on + strandat 547.577 kb on + strandat 547.577 kb on + strandat 547.578 kb on - strandat 547.578 kb on - strandat 547.578 kb on - strandat 547.578 kb on - strandat 547.578 kb on - strandat 547.578 kb on - strandat 547.578 kb on - strandat 547.578 kb on - strandat 547.578 kb on - strandat 547.578 kb on - strandat 547.592 kb on + strandat 547.593 kb on - strandat 547.593 kb on - strandat 547.772 kb on + strand, within LRK53_RS02385at 547.772 kb on + strand, within LRK53_RS02385at 547.772 kb on + strand, within LRK53_RS02385at 547.773 kb on - strand, within LRK53_RS02385at 547.773 kb on - strand, within LRK53_RS02385at 547.773 kb on - strand, within LRK53_RS02385at 547.856 kb on + strand, within LRK53_RS02385at 547.923 kb on + strand, within LRK53_RS02385at 547.923 kb on + strand, within LRK53_RS02385at 547.923 kb on + strand, within LRK53_RS02385at 547.924 kb on - strand, within LRK53_RS02385at 548.085 kb on - strandat 548.259 kb on + strandat 548.260 kb on - strandat 548.260 kb on - strandat 548.419 kb on - strand, within LRK53_RS02390at 548.481 kb on + strand, within LRK53_RS02390at 548.481 kb on + strand, within LRK53_RS02390at 548.482 kb on - strand, within LRK53_RS02390at 548.482 kb on - strand, within LRK53_RS02390at 548.763 kb on + strand, within LRK53_RS02390at 548.790 kb on + strand, within LRK53_RS02390at 548.791 kb on - strand, within LRK53_RS02390at 548.791 kb on - strand, within LRK53_RS02390at 548.791 kb on - strand, within LRK53_RS02390at 548.835 kb on + strand, within LRK53_RS02390at 548.835 kb on + strand, within LRK53_RS02390at 548.835 kb on + strand, within LRK53_RS02390at 548.835 kb on + strand, within LRK53_RS02390at 548.835 kb on + strand, within LRK53_RS02390at 548.836 kb on - strand, within LRK53_RS02390at 548.836 kb on - strand, within LRK53_RS02390at 548.836 kb on - strand, within LRK53_RS02390at 548.836 kb on - strand, within LRK53_RS02390at 548.836 kb on - strand, within LRK53_RS02390at 548.836 kb on - strand, within LRK53_RS02390at 548.868 kb on + strand, within LRK53_RS02390at 548.868 kb on + strand, within LRK53_RS02390at 548.868 kb on + strand, within LRK53_RS02390at 548.868 kb on + strand, within LRK53_RS02390at 548.868 kb on + strand, within LRK53_RS02390at 548.868 kb on + strand, within LRK53_RS02390at 548.868 kb on + strand, within LRK53_RS02390at 548.868 kb on + strand, within LRK53_RS02390at 548.869 kb on - strand, within LRK53_RS02390at 548.869 kb on - strand, within LRK53_RS02390at 548.869 kb on - strand, within LRK53_RS02390at 548.869 kb on - strand, within LRK53_RS02390at 549.198 kb on + strand, within LRK53_RS02390at 549.228 kb on + strand, within LRK53_RS02390at 549.228 kb on + strand, within LRK53_RS02390at 549.228 kb on + strand, within LRK53_RS02390at 549.229 kb on - strand, within LRK53_RS02390at 549.229 kb on - strand, within LRK53_RS02390at 549.229 kb on - strand, within LRK53_RS02390at 549.229 kb on - strand, within LRK53_RS02390at 549.282 kb on + strand, within LRK53_RS02390at 549.339 kb on + strand, within LRK53_RS02390at 549.339 kb on + strand, within LRK53_RS02390at 549.339 kb on + strand, within LRK53_RS02390at 549.340 kb on - strand, within LRK53_RS02390at 549.340 kb on - strand, within LRK53_RS02390at 549.340 kb on - strand, within LRK53_RS02390at 549.342 kb on + strand, within LRK53_RS02390at 549.342 kb on + strand, within LRK53_RS02390at 549.343 kb on - strand, within LRK53_RS02390at 549.343 kb on - strand, within LRK53_RS02390at 549.349 kb on + strand, within LRK53_RS02390at 549.349 kb on + strand, within LRK53_RS02390at 549.349 kb on + strand, within LRK53_RS02390at 549.350 kb on - strand, within LRK53_RS02390at 549.350 kb on - strand, within LRK53_RS02390at 549.350 kb on - strand, within LRK53_RS02390at 549.350 kb on - strand, within LRK53_RS02390at 549.384 kb on + strand, within LRK53_RS02390at 549.384 kb on + strand, within LRK53_RS02390at 549.384 kb on + strand, within LRK53_RS02390at 549.385 kb on - strand, within LRK53_RS02390at 549.397 kb on - strand, within LRK53_RS02390at 549.852 kb on + strand, within LRK53_RS02390at 549.852 kb on + strand, within LRK53_RS02390at 549.852 kb on + strand, within LRK53_RS02390at 549.852 kb on + strand, within LRK53_RS02390at 549.853 kb on - strand, within LRK53_RS02390at 549.853 kb on - strand, within LRK53_RS02390at 549.853 kb on - strand, within LRK53_RS02390at 549.853 kb on - strand, within LRK53_RS02390at 549.853 kb on - strand, within LRK53_RS02390at 549.853 kb on - strand, within LRK53_RS02390at 549.990 kb on + strand, within LRK53_RS02390at 549.991 kb on - strand, within LRK53_RS02390at 549.993 kb on + strand, within LRK53_RS02390at 549.993 kb on + strand, within LRK53_RS02390at 549.993 kb on + strand, within LRK53_RS02390at 549.993 kb on + strand, within LRK53_RS02390at 549.993 kb on + strand, within LRK53_RS02390at 549.993 kb on + strand, within LRK53_RS02390at 549.994 kb on - strand, within LRK53_RS02390at 549.994 kb on - strand, within LRK53_RS02390at 549.994 kb on - strand, within LRK53_RS02390at 549.994 kb on - strand, within LRK53_RS02390at 549.994 kb on - strand, within LRK53_RS02390at 549.994 kb on - strand, within LRK53_RS02390at 549.994 kb on - strand, within LRK53_RS02390at 549.994 kb on - strand, within LRK53_RS02390at 549.994 kb on - strand, within LRK53_RS02390at 549.994 kb on - strand, within LRK53_RS02390at 549.994 kb on - strand, within LRK53_RS02390at 549.994 kb on - strand, within LRK53_RS02390at 549.999 kb on + strand, within LRK53_RS02390at 549.999 kb on + strand, within LRK53_RS02390at 549.999 kb on + strand, within LRK53_RS02390at 549.999 kb on + strand, within LRK53_RS02390at 549.999 kb on + strand, within LRK53_RS02390at 549.999 kb on + strand, within LRK53_RS02390at 549.999 kb on + strand, within LRK53_RS02390at 549.999 kb on + strand, within LRK53_RS02390at 549.999 kb on + strand, within LRK53_RS02390at 549.999 kb on + strand, within LRK53_RS02390at 549.999 kb on + strand, within LRK53_RS02390at 549.999 kb on + strand, within LRK53_RS02390at 550.000 kb on - strand, within LRK53_RS02390at 550.000 kb on - strand, within LRK53_RS02390at 550.000 kb on - strand, within LRK53_RS02390at 550.000 kb on - strand, within LRK53_RS02390at 550.000 kb on - strand, within LRK53_RS02390at 550.000 kb on - strand, within LRK53_RS02390at 550.000 kb on - strand, within LRK53_RS02390at 550.000 kb on - strand, within LRK53_RS02390at 550.000 kb on - strand, within LRK53_RS02390at 550.000 kb on - strand, within LRK53_RS02390at 550.000 kb on - strand, within LRK53_RS02390at 550.000 kb on - strand, within LRK53_RS02390at 550.317 kb on + strandat 550.317 kb on + strandat 550.317 kb on + strandat 550.317 kb on + strandat 550.317 kb on + strandat 550.798 kb on + strandat 550.799 kb on - strandat 550.799 kb on - strandat 551.155 kb on + strand, within LRK53_RS02400

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with L-Serine
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547,251 + LRK53_RS02380 0.49 +1.0
547,251 + LRK53_RS02380 0.49 +0.0
547,251 + LRK53_RS02380 0.49 +0.0
547,251 + LRK53_RS02380 0.49 +0.5
547,251 + LRK53_RS02380 0.49 -1.0
547,251 + LRK53_RS02380 0.49 -1.0
547,251 + LRK53_RS02380 0.49 +0.0
547,533 + +0.0
547,556 + -1.5
547,556 + -1.5
547,556 + -1.8
547,557 - -2.3
547,557 - -0.9
547,557 - -0.8
547,557 - -0.5
547,557 - -0.9
547,577 + -2.0
547,577 + -1.0
547,577 + -1.0
547,577 + -1.0
547,577 + -1.0
547,577 + -1.8
547,578 - -0.3
547,578 - -0.5
547,578 - -0.5
547,578 - +0.0
547,578 - -0.5
547,578 - +0.0
547,578 - -2.0
547,578 - -0.8
547,578 - -1.0
547,578 - +1.0
547,592 + +2.6
547,593 - +0.5
547,593 - -0.2
547,772 + LRK53_RS02385 0.43 -0.2
547,772 + LRK53_RS02385 0.43 -1.4
547,772 + LRK53_RS02385 0.43 +0.0
547,773 - LRK53_RS02385 0.44 +0.0
547,773 - LRK53_RS02385 0.44 -1.9
547,773 - LRK53_RS02385 0.44 +0.0
547,856 + LRK53_RS02385 0.59 -1.3
547,923 + LRK53_RS02385 0.72 -0.5
547,923 + LRK53_RS02385 0.72 -0.7
547,923 + LRK53_RS02385 0.72 -0.6
547,924 - LRK53_RS02385 0.72 -0.0
548,085 - +1.0
548,259 + +0.0
548,260 - +1.0
548,260 - +0.0
548,419 - LRK53_RS02390 0.13 +1.0
548,481 + LRK53_RS02390 0.16 -0.3
548,481 + LRK53_RS02390 0.16 +0.3
548,482 - LRK53_RS02390 0.16 +0.0
548,482 - LRK53_RS02390 0.16 -0.3
548,763 + LRK53_RS02390 0.29 -0.7
548,790 + LRK53_RS02390 0.31 -0.7
548,791 - LRK53_RS02390 0.31 +0.0
548,791 - LRK53_RS02390 0.31 -1.3
548,791 - LRK53_RS02390 0.31 -0.5
548,835 + LRK53_RS02390 0.33 +0.5
548,835 + LRK53_RS02390 0.33 +0.2
548,835 + LRK53_RS02390 0.33 -1.2
548,835 + LRK53_RS02390 0.33 +0.3
548,835 + LRK53_RS02390 0.33 +0.8
548,836 - LRK53_RS02390 0.33 -0.5
548,836 - LRK53_RS02390 0.33 -0.6
548,836 - LRK53_RS02390 0.33 +0.2
548,836 - LRK53_RS02390 0.33 -0.3
548,836 - LRK53_RS02390 0.33 +0.0
548,836 - LRK53_RS02390 0.33 +1.0
548,868 + LRK53_RS02390 0.35 +2.0
548,868 + LRK53_RS02390 0.35 -0.7
548,868 + LRK53_RS02390 0.35 -1.0
548,868 + LRK53_RS02390 0.35 -0.8
548,868 + LRK53_RS02390 0.35 -1.5
548,868 + LRK53_RS02390 0.35 -0.6
548,868 + LRK53_RS02390 0.35 +1.6
548,868 + LRK53_RS02390 0.35 +2.0
548,869 - LRK53_RS02390 0.35 -0.3
548,869 - LRK53_RS02390 0.35 +0.5
548,869 - LRK53_RS02390 0.35 -0.5
548,869 - LRK53_RS02390 0.35 -1.8
549,198 + LRK53_RS02390 0.51 -0.2
549,228 + LRK53_RS02390 0.52 -0.1
549,228 + LRK53_RS02390 0.52 -0.1
549,228 + LRK53_RS02390 0.52 +2.0
549,229 - LRK53_RS02390 0.52 +1.0
549,229 - LRK53_RS02390 0.52 +1.0
549,229 - LRK53_RS02390 0.52 -0.5
549,229 - LRK53_RS02390 0.52 +1.0
549,282 + LRK53_RS02390 0.55 -0.5
549,339 + LRK53_RS02390 0.57 -0.9
549,339 + LRK53_RS02390 0.57 -2.0
549,339 + LRK53_RS02390 0.57 +1.0
549,340 - LRK53_RS02390 0.57 +0.0
549,340 - LRK53_RS02390 0.57 -0.9
549,340 - LRK53_RS02390 0.57 -0.3
549,342 + LRK53_RS02390 0.58 +0.0
549,342 + LRK53_RS02390 0.58 +0.0
549,343 - LRK53_RS02390 0.58 -1.3
549,343 - LRK53_RS02390 0.58 -2.0
549,349 + LRK53_RS02390 0.58 -1.0
549,349 + LRK53_RS02390 0.58 -0.9
549,349 + LRK53_RS02390 0.58 +0.0
549,350 - LRK53_RS02390 0.58 +0.0
549,350 - LRK53_RS02390 0.58 -1.5
549,350 - LRK53_RS02390 0.58 -2.8
549,350 - LRK53_RS02390 0.58 -1.3
549,384 + LRK53_RS02390 0.60 -0.5
549,384 + LRK53_RS02390 0.60 -1.0
549,384 + LRK53_RS02390 0.60 -0.3
549,385 - LRK53_RS02390 0.60 +0.0
549,397 - LRK53_RS02390 0.60 +0.5
549,852 + LRK53_RS02390 0.82 -0.5
549,852 + LRK53_RS02390 0.82 -1.0
549,852 + LRK53_RS02390 0.82 -0.5
549,852 + LRK53_RS02390 0.82 +0.0
549,853 - LRK53_RS02390 0.82 -1.3
549,853 - LRK53_RS02390 0.82 +1.0
549,853 - LRK53_RS02390 0.82 -0.7
549,853 - LRK53_RS02390 0.82 +0.0
549,853 - LRK53_RS02390 0.82 +1.0
549,853 - LRK53_RS02390 0.82 -0.6
549,990 + LRK53_RS02390 0.89 +0.7
549,991 - LRK53_RS02390 0.89 +0.0
549,993 + LRK53_RS02390 0.89 +1.0
549,993 + LRK53_RS02390 0.89 -0.5
549,993 + LRK53_RS02390 0.89 -0.5
549,993 + LRK53_RS02390 0.89 +0.0
549,993 + LRK53_RS02390 0.89 -0.3
549,993 + LRK53_RS02390 0.89 +2.6
549,994 - LRK53_RS02390 0.89 -1.8
549,994 - LRK53_RS02390 0.89 +0.0
549,994 - LRK53_RS02390 0.89 -0.8
549,994 - LRK53_RS02390 0.89 -1.2
549,994 - LRK53_RS02390 0.89 -1.4
549,994 - LRK53_RS02390 0.89 -0.5
549,994 - LRK53_RS02390 0.89 -0.5
549,994 - LRK53_RS02390 0.89 -0.5
549,994 - LRK53_RS02390 0.89 -0.5
549,994 - LRK53_RS02390 0.89 +1.0
549,994 - LRK53_RS02390 0.89 -0.5
549,994 - LRK53_RS02390 0.89 +0.0
549,999 + LRK53_RS02390 0.90 -1.3
549,999 + LRK53_RS02390 0.90 -0.5
549,999 + LRK53_RS02390 0.90 +0.0
549,999 + LRK53_RS02390 0.90 -1.0
549,999 + LRK53_RS02390 0.90 +2.0
549,999 + LRK53_RS02390 0.90 -0.3
549,999 + LRK53_RS02390 0.90 +1.0
549,999 + LRK53_RS02390 0.90 -0.7
549,999 + LRK53_RS02390 0.90 +0.7
549,999 + LRK53_RS02390 0.90 +1.0
549,999 + LRK53_RS02390 0.90 -1.6
549,999 + LRK53_RS02390 0.90 +1.0
550,000 - LRK53_RS02390 0.90 -0.5
550,000 - LRK53_RS02390 0.90 +0.0
550,000 - LRK53_RS02390 0.90 -1.8
550,000 - LRK53_RS02390 0.90 -0.3
550,000 - LRK53_RS02390 0.90 -1.5
550,000 - LRK53_RS02390 0.90 +0.0
550,000 - LRK53_RS02390 0.90 -1.0
550,000 - LRK53_RS02390 0.90 +1.5
550,000 - LRK53_RS02390 0.90 +0.0
550,000 - LRK53_RS02390 0.90 -1.5
550,000 - LRK53_RS02390 0.90 -0.5
550,000 - LRK53_RS02390 0.90 +0.0
550,317 + +0.6
550,317 + -0.9
550,317 + -0.5
550,317 + -0.3
550,317 + +1.0
550,798 + +0.0
550,799 - +0.3
550,799 - -0.5
551,155 + LRK53_RS02400 0.45 -1.0

Or see this region's nucleotide sequence