Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS17925

Experiment: defined media with L-Serine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS17915 and LRK53_RS17920 overlap by 1 nucleotidesLRK53_RS17920 and LRK53_RS17925 are separated by 31 nucleotidesLRK53_RS17925 and LRK53_RS17930 are separated by 7 nucleotides LRK53_RS17915: LRK53_RS17915 - arginine--tRNA ligase, at 3,936,055 to 3,937,743 _RS17915 LRK53_RS17920: LRK53_RS17920 - SPOR domain-containing protein, at 3,937,743 to 3,938,438 _RS17920 LRK53_RS17925: LRK53_RS17925 - SDR family NAD(P)-dependent oxidoreductase, at 3,938,470 to 3,939,225 _RS17925 LRK53_RS17930: LRK53_RS17930 - patatin-like phospholipase family protein, at 3,939,233 to 3,940,414 _RS17930 Position (kb) 3938 3939 3940Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3937.741 kb on + strandat 3937.741 kb on + strandat 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.893 kb on + strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.894 kb on - strand, within LRK53_RS17925at 3938.899 kb on + strand, within LRK53_RS17925at 3938.917 kb on + strand, within LRK53_RS17925at 3938.917 kb on + strand, within LRK53_RS17925at 3938.917 kb on + strand, within LRK53_RS17925at 3938.917 kb on + strand, within LRK53_RS17925at 3938.917 kb on + strand, within LRK53_RS17925at 3938.917 kb on + strand, within LRK53_RS17925at 3938.917 kb on + strand, within LRK53_RS17925at 3938.917 kb on + strand, within LRK53_RS17925at 3938.918 kb on - strand, within LRK53_RS17925at 3938.918 kb on - strand, within LRK53_RS17925at 3939.076 kb on + strand, within LRK53_RS17925at 3939.076 kb on + strand, within LRK53_RS17925at 3939.122 kb on + strand, within LRK53_RS17925at 3939.122 kb on + strand, within LRK53_RS17925at 3939.122 kb on + strand, within LRK53_RS17925at 3939.122 kb on + strand, within LRK53_RS17925at 3939.122 kb on + strand, within LRK53_RS17925at 3939.122 kb on + strand, within LRK53_RS17925at 3939.123 kb on - strand, within LRK53_RS17925at 3939.123 kb on - strand, within LRK53_RS17925at 3939.123 kb on - strand, within LRK53_RS17925at 3939.381 kb on + strand, within LRK53_RS17930at 3939.381 kb on + strand, within LRK53_RS17930at 3939.381 kb on + strand, within LRK53_RS17930at 3939.381 kb on + strand, within LRK53_RS17930at 3939.381 kb on + strand, within LRK53_RS17930at 3939.382 kb on - strand, within LRK53_RS17930at 3939.382 kb on - strand, within LRK53_RS17930at 3939.382 kb on - strand, within LRK53_RS17930at 3939.417 kb on + strand, within LRK53_RS17930at 3939.417 kb on + strand, within LRK53_RS17930at 3939.417 kb on + strand, within LRK53_RS17930at 3939.417 kb on + strand, within LRK53_RS17930at 3939.418 kb on - strand, within LRK53_RS17930at 3939.418 kb on - strand, within LRK53_RS17930at 3939.474 kb on + strand, within LRK53_RS17930at 3939.474 kb on + strand, within LRK53_RS17930at 3939.588 kb on + strand, within LRK53_RS17930at 3939.588 kb on + strand, within LRK53_RS17930at 3939.589 kb on - strand, within LRK53_RS17930at 3939.589 kb on - strand, within LRK53_RS17930at 3939.711 kb on + strand, within LRK53_RS17930at 3939.711 kb on + strand, within LRK53_RS17930at 3939.711 kb on + strand, within LRK53_RS17930at 3939.711 kb on + strand, within LRK53_RS17930at 3939.711 kb on + strand, within LRK53_RS17930at 3939.711 kb on + strand, within LRK53_RS17930at 3939.711 kb on + strand, within LRK53_RS17930at 3939.711 kb on + strand, within LRK53_RS17930at 3939.711 kb on + strand, within LRK53_RS17930at 3939.711 kb on + strand, within LRK53_RS17930at 3939.711 kb on + strand, within LRK53_RS17930at 3939.711 kb on + strand, within LRK53_RS17930at 3939.712 kb on - strand, within LRK53_RS17930at 3939.712 kb on - strand, within LRK53_RS17930at 3939.712 kb on - strand, within LRK53_RS17930at 3939.712 kb on - strand, within LRK53_RS17930at 3939.712 kb on - strand, within LRK53_RS17930at 3939.712 kb on - strand, within LRK53_RS17930at 3939.712 kb on - strand, within LRK53_RS17930at 3939.712 kb on - strand, within LRK53_RS17930at 3939.712 kb on - strand, within LRK53_RS17930at 3939.712 kb on - strand, within LRK53_RS17930at 3939.712 kb on - strand, within LRK53_RS17930at 3939.712 kb on - strand, within LRK53_RS17930at 3939.712 kb on - strand, within LRK53_RS17930at 3939.712 kb on - strand, within LRK53_RS17930at 3939.747 kb on + strand, within LRK53_RS17930at 3939.748 kb on - strand, within LRK53_RS17930at 3939.748 kb on - strand, within LRK53_RS17930at 3939.748 kb on - strand, within LRK53_RS17930at 3939.748 kb on - strand, within LRK53_RS17930at 3939.846 kb on + strand, within LRK53_RS17930at 3939.846 kb on + strand, within LRK53_RS17930at 3939.847 kb on - strand, within LRK53_RS17930at 3939.966 kb on + strand, within LRK53_RS17930at 3939.966 kb on + strand, within LRK53_RS17930at 3939.967 kb on - strand, within LRK53_RS17930

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction defined media with L-Serine
remove
3,937,741 + +0.4
3,937,741 + +1.2
3,938,893 + LRK53_RS17925 0.56 -1.1
3,938,893 + LRK53_RS17925 0.56 -1.7
3,938,893 + LRK53_RS17925 0.56 +0.2
3,938,893 + LRK53_RS17925 0.56 -1.1
3,938,893 + LRK53_RS17925 0.56 -0.6
3,938,893 + LRK53_RS17925 0.56 -1.6
3,938,893 + LRK53_RS17925 0.56 +0.2
3,938,893 + LRK53_RS17925 0.56 -2.8
3,938,893 + LRK53_RS17925 0.56 -0.8
3,938,893 + LRK53_RS17925 0.56 -0.2
3,938,893 + LRK53_RS17925 0.56 -1.6
3,938,893 + LRK53_RS17925 0.56 -1.3
3,938,893 + LRK53_RS17925 0.56 +1.2
3,938,893 + LRK53_RS17925 0.56 -0.4
3,938,893 + LRK53_RS17925 0.56 -2.0
3,938,893 + LRK53_RS17925 0.56 -1.8
3,938,893 + LRK53_RS17925 0.56 -1.8
3,938,893 + LRK53_RS17925 0.56 -0.4
3,938,893 + LRK53_RS17925 0.56 -1.1
3,938,893 + LRK53_RS17925 0.56 -2.2
3,938,893 + LRK53_RS17925 0.56 -1.1
3,938,893 + LRK53_RS17925 0.56 -0.8
3,938,893 + LRK53_RS17925 0.56 -1.4
3,938,893 + LRK53_RS17925 0.56 -0.7
3,938,893 + LRK53_RS17925 0.56 -1.1
3,938,893 + LRK53_RS17925 0.56 -1.8
3,938,893 + LRK53_RS17925 0.56 -2.1
3,938,893 + LRK53_RS17925 0.56 -1.6
3,938,893 + LRK53_RS17925 0.56 -1.6
3,938,893 + LRK53_RS17925 0.56 -1.1
3,938,893 + LRK53_RS17925 0.56 -0.8
3,938,893 + LRK53_RS17925 0.56 -2.4
3,938,893 + LRK53_RS17925 0.56 +0.2
3,938,893 + LRK53_RS17925 0.56 -1.4
3,938,893 + LRK53_RS17925 0.56 +1.2
3,938,893 + LRK53_RS17925 0.56 -1.8
3,938,893 + LRK53_RS17925 0.56 -2.2
3,938,893 + LRK53_RS17925 0.56 -3.9
3,938,893 + LRK53_RS17925 0.56 -1.1
3,938,893 + LRK53_RS17925 0.56 -1.6
3,938,893 + LRK53_RS17925 0.56 +0.2
3,938,893 + LRK53_RS17925 0.56 -1.1
3,938,893 + LRK53_RS17925 0.56 -1.8
3,938,894 - LRK53_RS17925 0.56 -1.0
3,938,894 - LRK53_RS17925 0.56 -1.8
3,938,894 - LRK53_RS17925 0.56 -1.6
3,938,894 - LRK53_RS17925 0.56 -3.6
3,938,894 - LRK53_RS17925 0.56 -2.5
3,938,894 - LRK53_RS17925 0.56 -1.4
3,938,894 - LRK53_RS17925 0.56 +0.4
3,938,894 - LRK53_RS17925 0.56 -2.3
3,938,894 - LRK53_RS17925 0.56 -2.2
3,938,894 - LRK53_RS17925 0.56 -1.1
3,938,894 - LRK53_RS17925 0.56 -2.8
3,938,894 - LRK53_RS17925 0.56 +0.6
3,938,894 - LRK53_RS17925 0.56 +0.2
3,938,894 - LRK53_RS17925 0.56 -3.5
3,938,894 - LRK53_RS17925 0.56 -1.9
3,938,894 - LRK53_RS17925 0.56 -2.4
3,938,894 - LRK53_RS17925 0.56 -2.7
3,938,894 - LRK53_RS17925 0.56 -1.8
3,938,894 - LRK53_RS17925 0.56 -0.8
3,938,894 - LRK53_RS17925 0.56 -1.1
3,938,894 - LRK53_RS17925 0.56 -0.4
3,938,894 - LRK53_RS17925 0.56 -1.4
3,938,894 - LRK53_RS17925 0.56 -1.6
3,938,894 - LRK53_RS17925 0.56 -1.7
3,938,894 - LRK53_RS17925 0.56 -2.0
3,938,894 - LRK53_RS17925 0.56 -1.1
3,938,894 - LRK53_RS17925 0.56 -1.1
3,938,894 - LRK53_RS17925 0.56 -2.4
3,938,894 - LRK53_RS17925 0.56 +0.2
3,938,894 - LRK53_RS17925 0.56 -3.5
3,938,894 - LRK53_RS17925 0.56 -1.5
3,938,894 - LRK53_RS17925 0.56 +0.6
3,938,894 - LRK53_RS17925 0.56 -0.4
3,938,894 - LRK53_RS17925 0.56 -3.1
3,938,894 - LRK53_RS17925 0.56 -0.9
3,938,899 + LRK53_RS17925 0.57 -1.3
3,938,917 + LRK53_RS17925 0.59 -1.6
3,938,917 + LRK53_RS17925 0.59 -0.1
3,938,917 + LRK53_RS17925 0.59 -1.1
3,938,917 + LRK53_RS17925 0.59 +0.2
3,938,917 + LRK53_RS17925 0.59 -2.0
3,938,917 + LRK53_RS17925 0.59 -1.1
3,938,917 + LRK53_RS17925 0.59 -0.6
3,938,917 + LRK53_RS17925 0.59 -1.6
3,938,918 - LRK53_RS17925 0.59 -2.4
3,938,918 - LRK53_RS17925 0.59 -2.1
3,939,076 + LRK53_RS17925 0.80 -1.8
3,939,076 + LRK53_RS17925 0.80 -0.9
3,939,122 + LRK53_RS17925 0.86 -1.6
3,939,122 + LRK53_RS17925 0.86 -2.3
3,939,122 + LRK53_RS17925 0.86 -0.4
3,939,122 + LRK53_RS17925 0.86 -2.3
3,939,122 + LRK53_RS17925 0.86 -0.4
3,939,122 + LRK53_RS17925 0.86 -1.7
3,939,123 - LRK53_RS17925 0.86 -0.4
3,939,123 - LRK53_RS17925 0.86 -1.6
3,939,123 - LRK53_RS17925 0.86 -0.8
3,939,381 + LRK53_RS17930 0.13 -0.0
3,939,381 + LRK53_RS17930 0.13 -0.6
3,939,381 + LRK53_RS17930 0.13 -0.3
3,939,381 + LRK53_RS17930 0.13 -0.6
3,939,381 + LRK53_RS17930 0.13 +0.6
3,939,382 - LRK53_RS17930 0.13 -1.2
3,939,382 - LRK53_RS17930 0.13 +1.2
3,939,382 - LRK53_RS17930 0.13 +2.2
3,939,417 + LRK53_RS17930 0.16 -1.5
3,939,417 + LRK53_RS17930 0.16 +0.2
3,939,417 + LRK53_RS17930 0.16 -0.4
3,939,417 + LRK53_RS17930 0.16 -0.6
3,939,418 - LRK53_RS17930 0.16 -0.1
3,939,418 - LRK53_RS17930 0.16 +0.6
3,939,474 + LRK53_RS17930 0.20 -1.0
3,939,474 + LRK53_RS17930 0.20 -0.6
3,939,588 + LRK53_RS17930 0.30 -1.6
3,939,588 + LRK53_RS17930 0.30 -0.0
3,939,589 - LRK53_RS17930 0.30 -0.4
3,939,589 - LRK53_RS17930 0.30 -0.4
3,939,711 + LRK53_RS17930 0.40 +1.2
3,939,711 + LRK53_RS17930 0.40 +0.6
3,939,711 + LRK53_RS17930 0.40 -0.4
3,939,711 + LRK53_RS17930 0.40 -0.4
3,939,711 + LRK53_RS17930 0.40 -2.3
3,939,711 + LRK53_RS17930 0.40 -2.5
3,939,711 + LRK53_RS17930 0.40 -0.4
3,939,711 + LRK53_RS17930 0.40 +0.6
3,939,711 + LRK53_RS17930 0.40 -0.1
3,939,711 + LRK53_RS17930 0.40 -0.4
3,939,711 + LRK53_RS17930 0.40 -0.3
3,939,711 + LRK53_RS17930 0.40 -0.4
3,939,712 - LRK53_RS17930 0.41 -1.1
3,939,712 - LRK53_RS17930 0.41 -0.3
3,939,712 - LRK53_RS17930 0.41 -0.4
3,939,712 - LRK53_RS17930 0.41 -0.8
3,939,712 - LRK53_RS17930 0.41 -0.8
3,939,712 - LRK53_RS17930 0.41 -0.5
3,939,712 - LRK53_RS17930 0.41 +0.2
3,939,712 - LRK53_RS17930 0.41 -0.8
3,939,712 - LRK53_RS17930 0.41 -0.8
3,939,712 - LRK53_RS17930 0.41 -0.8
3,939,712 - LRK53_RS17930 0.41 -1.4
3,939,712 - LRK53_RS17930 0.41 -0.4
3,939,712 - LRK53_RS17930 0.41 -1.4
3,939,712 - LRK53_RS17930 0.41 -1.8
3,939,747 + LRK53_RS17930 0.43 -0.9
3,939,748 - LRK53_RS17930 0.44 +0.6
3,939,748 - LRK53_RS17930 0.44 -1.1
3,939,748 - LRK53_RS17930 0.44 -1.0
3,939,748 - LRK53_RS17930 0.44 -0.6
3,939,846 + LRK53_RS17930 0.52 -1.0
3,939,846 + LRK53_RS17930 0.52 -0.6
3,939,847 - LRK53_RS17930 0.52 -0.4
3,939,966 + LRK53_RS17930 0.62 +2.2
3,939,966 + LRK53_RS17930 0.62 -1.8
3,939,967 - LRK53_RS17930 0.62 +0.2

Or see this region's nucleotide sequence