Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS16950

Experiment: defined media with L-Serine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS16945 and LRK53_RS16950 overlap by 4 nucleotidesLRK53_RS16950 and LRK53_RS16955 are separated by 57 nucleotidesLRK53_RS16955 and LRK53_RS16960 are separated by 113 nucleotides LRK53_RS16945: LRK53_RS16945 - serine/threonine-protein kinase, at 3,720,334 to 3,723,633 _RS16945 LRK53_RS16950: LRK53_RS16950 - sensor histidine kinase, at 3,723,630 to 3,724,361 _RS16950 LRK53_RS16955: LRK53_RS16955 - response regulator transcription factor, at 3,724,419 to 3,725,069 _RS16955 LRK53_RS16960: LRK53_RS16960 - 2OG-Fe(II) oxygenase, at 3,725,183 to 3,725,908 _RS16960 Position (kb) 3723 3724 3725Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3722.713 kb on + strand, within LRK53_RS16945at 3722.713 kb on + strand, within LRK53_RS16945at 3722.713 kb on + strand, within LRK53_RS16945at 3722.713 kb on + strand, within LRK53_RS16945at 3722.713 kb on + strand, within LRK53_RS16945at 3722.713 kb on + strand, within LRK53_RS16945at 3722.713 kb on + strand, within LRK53_RS16945at 3722.713 kb on + strand, within LRK53_RS16945at 3722.713 kb on + strand, within LRK53_RS16945at 3722.713 kb on + strand, within LRK53_RS16945at 3722.713 kb on + strand, within LRK53_RS16945at 3722.714 kb on - strand, within LRK53_RS16945at 3722.714 kb on - strand, within LRK53_RS16945at 3722.714 kb on - strand, within LRK53_RS16945at 3722.714 kb on - strand, within LRK53_RS16945at 3722.714 kb on - strand, within LRK53_RS16945at 3722.714 kb on - strand, within LRK53_RS16945at 3722.714 kb on - strand, within LRK53_RS16945at 3722.724 kb on + strand, within LRK53_RS16945at 3722.724 kb on + strand, within LRK53_RS16945at 3722.725 kb on - strand, within LRK53_RS16945at 3722.725 kb on - strand, within LRK53_RS16945at 3722.725 kb on - strand, within LRK53_RS16945at 3722.725 kb on - strand, within LRK53_RS16945at 3723.091 kb on - strand, within LRK53_RS16945at 3723.395 kb on + strandat 3723.395 kb on + strandat 3723.403 kb on + strandat 3723.624 kb on + strandat 3723.624 kb on + strandat 3723.624 kb on + strandat 3723.625 kb on - strandat 3723.625 kb on - strandat 3723.625 kb on - strandat 3724.147 kb on + strand, within LRK53_RS16950at 3724.147 kb on + strand, within LRK53_RS16950at 3724.147 kb on + strand, within LRK53_RS16950at 3724.148 kb on - strand, within LRK53_RS16950at 3724.148 kb on - strand, within LRK53_RS16950at 3724.148 kb on - strand, within LRK53_RS16950at 3724.148 kb on - strand, within LRK53_RS16950at 3724.643 kb on - strand, within LRK53_RS16955at 3724.695 kb on + strand, within LRK53_RS16955at 3724.695 kb on + strand, within LRK53_RS16955at 3724.695 kb on + strand, within LRK53_RS16955at 3724.695 kb on + strand, within LRK53_RS16955at 3724.695 kb on + strand, within LRK53_RS16955at 3724.695 kb on + strand, within LRK53_RS16955at 3724.695 kb on + strand, within LRK53_RS16955at 3724.695 kb on + strand, within LRK53_RS16955at 3724.695 kb on + strand, within LRK53_RS16955at 3724.695 kb on + strand, within LRK53_RS16955at 3724.695 kb on + strand, within LRK53_RS16955at 3724.696 kb on - strand, within LRK53_RS16955at 3724.696 kb on - strand, within LRK53_RS16955at 3724.696 kb on - strand, within LRK53_RS16955at 3724.696 kb on - strand, within LRK53_RS16955at 3724.696 kb on - strand, within LRK53_RS16955at 3724.696 kb on - strand, within LRK53_RS16955at 3724.696 kb on - strand, within LRK53_RS16955at 3724.696 kb on - strand, within LRK53_RS16955at 3724.696 kb on - strand, within LRK53_RS16955at 3724.696 kb on - strand, within LRK53_RS16955at 3724.696 kb on - strand, within LRK53_RS16955at 3724.731 kb on + strand, within LRK53_RS16955at 3724.732 kb on - strand, within LRK53_RS16955at 3724.775 kb on - strand, within LRK53_RS16955at 3724.872 kb on + strand, within LRK53_RS16955at 3724.996 kb on + strand, within LRK53_RS16955at 3724.997 kb on - strand, within LRK53_RS16955at 3724.997 kb on - strand, within LRK53_RS16955at 3724.997 kb on - strand, within LRK53_RS16955at 3724.997 kb on - strand, within LRK53_RS16955at 3725.021 kb on + strandat 3725.041 kb on - strandat 3725.041 kb on - strandat 3725.041 kb on - strandat 3725.067 kb on + strandat 3725.067 kb on + strandat 3725.067 kb on + strandat 3725.067 kb on + strandat 3725.067 kb on + strandat 3725.067 kb on + strandat 3725.067 kb on + strandat 3725.067 kb on + strandat 3725.067 kb on + strandat 3725.067 kb on + strandat 3725.068 kb on - strandat 3725.068 kb on - strandat 3725.068 kb on - strandat 3725.068 kb on - strandat 3725.068 kb on - strandat 3725.068 kb on - strandat 3725.068 kb on - strandat 3725.068 kb on - strandat 3725.068 kb on - strandat 3725.072 kb on - strandat 3725.097 kb on + strandat 3725.097 kb on + strandat 3725.234 kb on + strandat 3725.234 kb on + strandat 3725.234 kb on + strandat 3725.234 kb on + strandat 3725.235 kb on - strandat 3725.235 kb on - strandat 3725.235 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with L-Serine
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3,722,713 + LRK53_RS16945 0.72 -1.6
3,722,713 + LRK53_RS16945 0.72 -2.4
3,722,713 + LRK53_RS16945 0.72 -0.1
3,722,713 + LRK53_RS16945 0.72 -0.2
3,722,713 + LRK53_RS16945 0.72 +0.6
3,722,713 + LRK53_RS16945 0.72 +0.2
3,722,713 + LRK53_RS16945 0.72 -0.5
3,722,713 + LRK53_RS16945 0.72 +0.7
3,722,713 + LRK53_RS16945 0.72 -0.6
3,722,713 + LRK53_RS16945 0.72 +2.2
3,722,713 + LRK53_RS16945 0.72 -1.1
3,722,714 - LRK53_RS16945 0.72 -1.2
3,722,714 - LRK53_RS16945 0.72 -1.0
3,722,714 - LRK53_RS16945 0.72 -0.8
3,722,714 - LRK53_RS16945 0.72 -0.4
3,722,714 - LRK53_RS16945 0.72 -0.4
3,722,714 - LRK53_RS16945 0.72 -0.2
3,722,714 - LRK53_RS16945 0.72 +0.1
3,722,724 + LRK53_RS16945 0.72 +0.6
3,722,724 + LRK53_RS16945 0.72 -0.6
3,722,725 - LRK53_RS16945 0.72 -1.1
3,722,725 - LRK53_RS16945 0.72 -0.8
3,722,725 - LRK53_RS16945 0.72 -2.4
3,722,725 - LRK53_RS16945 0.72 +0.4
3,723,091 - LRK53_RS16945 0.84 -1.0
3,723,395 + -1.4
3,723,395 + -0.1
3,723,403 + +0.6
3,723,624 + +1.2
3,723,624 + -0.6
3,723,624 + -0.5
3,723,625 - +2.2
3,723,625 - -1.6
3,723,625 - -1.0
3,724,147 + LRK53_RS16950 0.71 -1.3
3,724,147 + LRK53_RS16950 0.71 -1.2
3,724,147 + LRK53_RS16950 0.71 -0.1
3,724,148 - LRK53_RS16950 0.71 +0.2
3,724,148 - LRK53_RS16950 0.71 -0.8
3,724,148 - LRK53_RS16950 0.71 +0.2
3,724,148 - LRK53_RS16950 0.71 -1.7
3,724,643 - LRK53_RS16955 0.34 +0.2
3,724,695 + LRK53_RS16955 0.42 +1.2
3,724,695 + LRK53_RS16955 0.42 -1.3
3,724,695 + LRK53_RS16955 0.42 +2.2
3,724,695 + LRK53_RS16955 0.42 -1.8
3,724,695 + LRK53_RS16955 0.42 -1.2
3,724,695 + LRK53_RS16955 0.42 +2.2
3,724,695 + LRK53_RS16955 0.42 -0.0
3,724,695 + LRK53_RS16955 0.42 +0.2
3,724,695 + LRK53_RS16955 0.42 -0.0
3,724,695 + LRK53_RS16955 0.42 -1.1
3,724,695 + LRK53_RS16955 0.42 -0.3
3,724,696 - LRK53_RS16955 0.43 -1.2
3,724,696 - LRK53_RS16955 0.43 +0.2
3,724,696 - LRK53_RS16955 0.43 -0.4
3,724,696 - LRK53_RS16955 0.43 +0.2
3,724,696 - LRK53_RS16955 0.43 -1.2
3,724,696 - LRK53_RS16955 0.43 +1.2
3,724,696 - LRK53_RS16955 0.43 +0.2
3,724,696 - LRK53_RS16955 0.43 -0.4
3,724,696 - LRK53_RS16955 0.43 -2.4
3,724,696 - LRK53_RS16955 0.43 +0.8
3,724,696 - LRK53_RS16955 0.43 -1.4
3,724,731 + LRK53_RS16955 0.48 -0.8
3,724,732 - LRK53_RS16955 0.48 -0.3
3,724,775 - LRK53_RS16955 0.55 -0.2
3,724,872 + LRK53_RS16955 0.70 -0.7
3,724,996 + LRK53_RS16955 0.89 +2.2
3,724,997 - LRK53_RS16955 0.89 +1.2
3,724,997 - LRK53_RS16955 0.89 -0.2
3,724,997 - LRK53_RS16955 0.89 +0.2
3,724,997 - LRK53_RS16955 0.89 +0.2
3,725,021 + -2.2
3,725,041 - -0.8
3,725,041 - -0.4
3,725,041 - +0.0
3,725,067 + -1.6
3,725,067 + -0.4
3,725,067 + -1.2
3,725,067 + -0.8
3,725,067 + +1.2
3,725,067 + -1.1
3,725,067 + +1.2
3,725,067 + -1.2
3,725,067 + -0.3
3,725,067 + -0.4
3,725,068 - -2.3
3,725,068 - +0.6
3,725,068 - +1.2
3,725,068 - -1.2
3,725,068 - -2.8
3,725,068 - +2.2
3,725,068 - -2.3
3,725,068 - -0.8
3,725,068 - -0.4
3,725,072 - -0.3
3,725,097 + -0.5
3,725,097 + -0.2
3,725,234 + +0.6
3,725,234 + -1.8
3,725,234 + -0.8
3,725,234 + -0.2
3,725,235 - -0.6
3,725,235 - -2.0
3,725,235 - -0.3

Or see this region's nucleotide sequence