Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS13505

Experiment: defined media with L-Serine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS13495 and LRK53_RS13500 are separated by 18 nucleotidesLRK53_RS13500 and LRK53_RS13505 are separated by 51 nucleotidesLRK53_RS13505 and LRK53_RS13510 overlap by 4 nucleotides LRK53_RS13495: LRK53_RS13495 - pantoate--beta-alanine ligase, at 2,980,864 to 2,981,709 _RS13495 LRK53_RS13500: LRK53_RS13500 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 2,981,728 to 2,982,558 _RS13500 LRK53_RS13505: LRK53_RS13505 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 2,982,610 to 2,983,089 _RS13505 LRK53_RS13510: LRK53_RS13510 - polynucleotide adenylyltransferase PcnB, at 2,983,086 to 2,984,432 _RS13510 Position (kb) 2982 2983 2984Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2981.699 kb on - strandat 2981.699 kb on - strandat 2981.699 kb on - strandat 2982.555 kb on - strandat 2982.555 kb on - strandat 2983.077 kb on - strandat 2983.951 kb on + strand, within LRK53_RS13510at 2983.951 kb on + strand, within LRK53_RS13510at 2983.952 kb on - strand, within LRK53_RS13510at 2983.952 kb on - strand, within LRK53_RS13510at 2983.952 kb on - strand, within LRK53_RS13510at 2983.981 kb on + strand, within LRK53_RS13510at 2983.981 kb on + strand, within LRK53_RS13510at 2983.981 kb on + strand, within LRK53_RS13510at 2983.981 kb on + strand, within LRK53_RS13510at 2983.981 kb on + strand, within LRK53_RS13510at 2983.981 kb on + strand, within LRK53_RS13510at 2983.982 kb on - strand, within LRK53_RS13510at 2983.982 kb on - strand, within LRK53_RS13510at 2983.982 kb on - strand, within LRK53_RS13510at 2983.982 kb on - strand, within LRK53_RS13510at 2983.982 kb on - strand, within LRK53_RS13510at 2983.982 kb on - strand, within LRK53_RS13510at 2983.982 kb on - strand, within LRK53_RS13510at 2983.982 kb on - strand, within LRK53_RS13510at 2983.982 kb on - strand, within LRK53_RS13510at 2983.982 kb on - strand, within LRK53_RS13510at 2983.982 kb on - strand, within LRK53_RS13510at 2983.982 kb on - strand, within LRK53_RS13510at 2983.982 kb on - strand, within LRK53_RS13510at 2983.982 kb on - strand, within LRK53_RS13510at 2983.982 kb on - strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.984 kb on + strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510at 2983.985 kb on - strand, within LRK53_RS13510

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with L-Serine
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2,981,699 - -1.1
2,981,699 - -0.7
2,981,699 - -0.1
2,982,555 - -1.0
2,982,555 - -2.9
2,983,077 - +0.9
2,983,951 + LRK53_RS13510 0.64 -0.1
2,983,951 + LRK53_RS13510 0.64 +0.9
2,983,952 - LRK53_RS13510 0.64 -1.1
2,983,952 - LRK53_RS13510 0.64 -2.3
2,983,952 - LRK53_RS13510 0.64 +0.9
2,983,981 + LRK53_RS13510 0.66 -0.1
2,983,981 + LRK53_RS13510 0.66 -0.1
2,983,981 + LRK53_RS13510 0.66 -0.1
2,983,981 + LRK53_RS13510 0.66 -0.7
2,983,981 + LRK53_RS13510 0.66 -1.7
2,983,981 + LRK53_RS13510 0.66 -0.7
2,983,982 - LRK53_RS13510 0.67 -0.8
2,983,982 - LRK53_RS13510 0.67 -0.1
2,983,982 - LRK53_RS13510 0.67 -1.3
2,983,982 - LRK53_RS13510 0.67 -2.7
2,983,982 - LRK53_RS13510 0.67 -3.9
2,983,982 - LRK53_RS13510 0.67 -1.0
2,983,982 - LRK53_RS13510 0.67 -0.1
2,983,982 - LRK53_RS13510 0.67 -0.7
2,983,982 - LRK53_RS13510 0.67 -0.1
2,983,982 - LRK53_RS13510 0.67 -0.7
2,983,982 - LRK53_RS13510 0.67 +0.3
2,983,982 - LRK53_RS13510 0.67 -1.9
2,983,982 - LRK53_RS13510 0.67 -1.0
2,983,982 - LRK53_RS13510 0.67 -1.1
2,983,982 - LRK53_RS13510 0.67 -0.7
2,983,984 + LRK53_RS13510 0.67 -2.1
2,983,984 + LRK53_RS13510 0.67 +0.9
2,983,984 + LRK53_RS13510 0.67 -0.1
2,983,984 + LRK53_RS13510 0.67 -1.7
2,983,984 + LRK53_RS13510 0.67 -0.1
2,983,984 + LRK53_RS13510 0.67 -1.5
2,983,984 + LRK53_RS13510 0.67 -3.2
2,983,984 + LRK53_RS13510 0.67 -1.7
2,983,984 + LRK53_RS13510 0.67 -0.7
2,983,984 + LRK53_RS13510 0.67 -1.4
2,983,984 + LRK53_RS13510 0.67 -0.1
2,983,984 + LRK53_RS13510 0.67 -0.7
2,983,984 + LRK53_RS13510 0.67 -1.1
2,983,984 + LRK53_RS13510 0.67 -0.7
2,983,984 + LRK53_RS13510 0.67 -1.1
2,983,984 + LRK53_RS13510 0.67 -1.1
2,983,984 + LRK53_RS13510 0.67 -1.1
2,983,984 + LRK53_RS13510 0.67 -1.9
2,983,984 + LRK53_RS13510 0.67 +0.9
2,983,984 + LRK53_RS13510 0.67 -2.3
2,983,984 + LRK53_RS13510 0.67 -0.7
2,983,984 + LRK53_RS13510 0.67 -0.1
2,983,984 + LRK53_RS13510 0.67 -1.9
2,983,984 + LRK53_RS13510 0.67 +0.9
2,983,984 + LRK53_RS13510 0.67 +0.5
2,983,984 + LRK53_RS13510 0.67 -0.7
2,983,984 + LRK53_RS13510 0.67 -2.1
2,983,984 + LRK53_RS13510 0.67 +0.9
2,983,985 - LRK53_RS13510 0.67 -0.1
2,983,985 - LRK53_RS13510 0.67 -0.1
2,983,985 - LRK53_RS13510 0.67 -1.2
2,983,985 - LRK53_RS13510 0.67 -0.4
2,983,985 - LRK53_RS13510 0.67 -1.5
2,983,985 - LRK53_RS13510 0.67 -1.3
2,983,985 - LRK53_RS13510 0.67 -3.1
2,983,985 - LRK53_RS13510 0.67 +1.3
2,983,985 - LRK53_RS13510 0.67 -0.1
2,983,985 - LRK53_RS13510 0.67 -0.2
2,983,985 - LRK53_RS13510 0.67 -0.7
2,983,985 - LRK53_RS13510 0.67 -2.1
2,983,985 - LRK53_RS13510 0.67 +0.9
2,983,985 - LRK53_RS13510 0.67 -0.7
2,983,985 - LRK53_RS13510 0.67 -0.1
2,983,985 - LRK53_RS13510 0.67 -1.4
2,983,985 - LRK53_RS13510 0.67 -0.9
2,983,985 - LRK53_RS13510 0.67 -0.1
2,983,985 - LRK53_RS13510 0.67 -1.4
2,983,985 - LRK53_RS13510 0.67 -1.7
2,983,985 - LRK53_RS13510 0.67 -3.1
2,983,985 - LRK53_RS13510 0.67 -0.1
2,983,985 - LRK53_RS13510 0.67 -0.5
2,983,985 - LRK53_RS13510 0.67 -1.7
2,983,985 - LRK53_RS13510 0.67 -1.7
2,983,985 - LRK53_RS13510 0.67 -1.3
2,983,985 - LRK53_RS13510 0.67 -0.3
2,983,985 - LRK53_RS13510 0.67 +0.5
2,983,985 - LRK53_RS13510 0.67 -1.5
2,983,985 - LRK53_RS13510 0.67 +0.9
2,983,985 - LRK53_RS13510 0.67 -1.6
2,983,985 - LRK53_RS13510 0.67 -1.4

Or see this region's nucleotide sequence