Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS05280

Experiment: defined media with L-Serine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS05270 and LRK53_RS05275 are separated by 90 nucleotidesLRK53_RS05275 and LRK53_RS05280 are separated by 41 nucleotidesLRK53_RS05280 and LRK53_RS05285 are separated by 50 nucleotides LRK53_RS05270: LRK53_RS05270 - polyhydroxyalkanoate depolymerase, at 1,234,982 to 1,236,235 _RS05270 LRK53_RS05275: LRK53_RS05275 - methyltransferase domain-containing protein, at 1,236,326 to 1,237,093 _RS05275 LRK53_RS05280: LRK53_RS05280 - RDD family protein, at 1,237,135 to 1,237,638 _RS05280 LRK53_RS05285: LRK53_RS05285 - site-specific tyrosine recombinase XerD, at 1,237,689 to 1,238,606 _RS05285 Position (kb) 1237 1238Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1236.228 kb on + strandat 1236.228 kb on + strandat 1236.229 kb on - strandat 1236.229 kb on - strandat 1236.229 kb on - strandat 1236.229 kb on - strandat 1236.229 kb on - strandat 1236.462 kb on + strand, within LRK53_RS05275at 1236.462 kb on + strand, within LRK53_RS05275at 1236.462 kb on + strand, within LRK53_RS05275at 1236.462 kb on + strand, within LRK53_RS05275at 1236.463 kb on - strand, within LRK53_RS05275at 1236.498 kb on + strand, within LRK53_RS05275at 1236.498 kb on + strand, within LRK53_RS05275at 1236.498 kb on + strand, within LRK53_RS05275at 1236.498 kb on + strand, within LRK53_RS05275at 1236.498 kb on + strand, within LRK53_RS05275at 1236.499 kb on - strand, within LRK53_RS05275at 1236.499 kb on - strand, within LRK53_RS05275at 1236.499 kb on - strand, within LRK53_RS05275at 1236.499 kb on - strand, within LRK53_RS05275at 1236.546 kb on + strand, within LRK53_RS05275at 1236.546 kb on + strand, within LRK53_RS05275at 1236.546 kb on + strand, within LRK53_RS05275at 1236.546 kb on + strand, within LRK53_RS05275at 1236.546 kb on + strand, within LRK53_RS05275at 1236.546 kb on + strand, within LRK53_RS05275at 1236.547 kb on - strand, within LRK53_RS05275at 1236.547 kb on - strand, within LRK53_RS05275at 1236.547 kb on - strand, within LRK53_RS05275at 1236.547 kb on - strand, within LRK53_RS05275at 1236.547 kb on - strand, within LRK53_RS05275at 1236.822 kb on - strand, within LRK53_RS05275at 1237.027 kb on - strandat 1237.027 kb on - strandat 1237.027 kb on - strandat 1237.027 kb on - strandat 1237.027 kb on - strandat 1237.027 kb on - strandat 1237.087 kb on + strandat 1237.087 kb on + strandat 1237.087 kb on + strandat 1237.087 kb on + strandat 1237.088 kb on - strandat 1237.088 kb on - strandat 1237.228 kb on + strand, within LRK53_RS05280at 1237.313 kb on - strand, within LRK53_RS05280at 1237.313 kb on - strand, within LRK53_RS05280at 1237.427 kb on + strand, within LRK53_RS05280at 1237.427 kb on + strand, within LRK53_RS05280at 1237.427 kb on + strand, within LRK53_RS05280at 1237.427 kb on + strand, within LRK53_RS05280at 1237.427 kb on + strand, within LRK53_RS05280at 1237.428 kb on - strand, within LRK53_RS05280at 1237.428 kb on - strand, within LRK53_RS05280at 1237.428 kb on - strand, within LRK53_RS05280at 1237.428 kb on - strand, within LRK53_RS05280at 1237.460 kb on + strand, within LRK53_RS05280at 1237.461 kb on - strand, within LRK53_RS05280at 1237.461 kb on - strand, within LRK53_RS05280at 1237.543 kb on + strand, within LRK53_RS05280at 1237.543 kb on + strand, within LRK53_RS05280at 1237.543 kb on + strand, within LRK53_RS05280at 1237.543 kb on + strand, within LRK53_RS05280at 1237.543 kb on + strand, within LRK53_RS05280at 1237.544 kb on - strand, within LRK53_RS05280at 1237.544 kb on - strand, within LRK53_RS05280at 1237.544 kb on - strand, within LRK53_RS05280at 1237.571 kb on + strand, within LRK53_RS05280at 1237.571 kb on + strand, within LRK53_RS05280at 1237.571 kb on + strand, within LRK53_RS05280at 1237.572 kb on - strand, within LRK53_RS05280at 1237.572 kb on - strand, within LRK53_RS05280at 1237.572 kb on - strand, within LRK53_RS05280at 1237.572 kb on - strand, within LRK53_RS05280at 1237.612 kb on - strandat 1237.890 kb on + strand, within LRK53_RS05285at 1237.891 kb on - strand, within LRK53_RS05285at 1237.953 kb on + strand, within LRK53_RS05285at 1237.956 kb on + strand, within LRK53_RS05285at 1237.956 kb on + strand, within LRK53_RS05285at 1237.956 kb on + strand, within LRK53_RS05285at 1237.957 kb on - strand, within LRK53_RS05285at 1237.957 kb on - strand, within LRK53_RS05285at 1237.957 kb on - strand, within LRK53_RS05285at 1238.096 kb on + strand, within LRK53_RS05285at 1238.096 kb on + strand, within LRK53_RS05285at 1238.096 kb on + strand, within LRK53_RS05285at 1238.096 kb on + strand, within LRK53_RS05285at 1238.096 kb on + strand, within LRK53_RS05285at 1238.096 kb on + strand, within LRK53_RS05285at 1238.097 kb on - strand, within LRK53_RS05285at 1238.097 kb on - strand, within LRK53_RS05285at 1238.097 kb on - strand, within LRK53_RS05285at 1238.097 kb on - strand, within LRK53_RS05285at 1238.136 kb on + strand, within LRK53_RS05285at 1238.136 kb on + strand, within LRK53_RS05285at 1238.136 kb on + strand, within LRK53_RS05285at 1238.136 kb on + strand, within LRK53_RS05285at 1238.136 kb on + strand, within LRK53_RS05285at 1238.136 kb on + strand, within LRK53_RS05285at 1238.136 kb on + strand, within LRK53_RS05285at 1238.136 kb on + strand, within LRK53_RS05285at 1238.136 kb on + strand, within LRK53_RS05285at 1238.136 kb on + strand, within LRK53_RS05285at 1238.136 kb on + strand, within LRK53_RS05285at 1238.136 kb on + strand, within LRK53_RS05285at 1238.136 kb on + strand, within LRK53_RS05285at 1238.136 kb on + strand, within LRK53_RS05285at 1238.136 kb on + strand, within LRK53_RS05285at 1238.136 kb on + strand, within LRK53_RS05285at 1238.136 kb on + strand, within LRK53_RS05285at 1238.136 kb on + strand, within LRK53_RS05285at 1238.136 kb on + strand, within LRK53_RS05285at 1238.136 kb on + strand, within LRK53_RS05285at 1238.136 kb on + strand, within LRK53_RS05285at 1238.137 kb on - strand, within LRK53_RS05285at 1238.137 kb on - strand, within LRK53_RS05285at 1238.137 kb on - strand, within LRK53_RS05285at 1238.137 kb on - strand, within LRK53_RS05285at 1238.137 kb on - strand, within LRK53_RS05285at 1238.137 kb on - strand, within LRK53_RS05285at 1238.137 kb on - strand, within LRK53_RS05285at 1238.137 kb on - strand, within LRK53_RS05285at 1238.137 kb on - strand, within LRK53_RS05285at 1238.137 kb on - strand, within LRK53_RS05285at 1238.137 kb on - strand, within LRK53_RS05285at 1238.137 kb on - strand, within LRK53_RS05285at 1238.137 kb on - strand, within LRK53_RS05285at 1238.137 kb on - strand, within LRK53_RS05285at 1238.137 kb on - strand, within LRK53_RS05285at 1238.137 kb on - strand, within LRK53_RS05285at 1238.137 kb on - strand, within LRK53_RS05285at 1238.167 kb on + strand, within LRK53_RS05285at 1238.168 kb on - strand, within LRK53_RS05285at 1238.283 kb on + strand, within LRK53_RS05285at 1238.283 kb on + strand, within LRK53_RS05285at 1238.284 kb on - strand, within LRK53_RS05285at 1238.284 kb on - strand, within LRK53_RS05285at 1238.284 kb on - strand, within LRK53_RS05285at 1238.397 kb on + strand, within LRK53_RS05285at 1238.544 kb on + strandat 1238.544 kb on + strandat 1238.544 kb on + strandat 1238.544 kb on + strandat 1238.544 kb on + strandat 1238.544 kb on + strandat 1238.545 kb on - strandat 1238.545 kb on - strandat 1238.545 kb on - strandat 1238.628 kb on - strandat 1238.628 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with L-Serine
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1,236,228 + -1.2
1,236,228 + -0.1
1,236,229 - -1.0
1,236,229 - -0.6
1,236,229 - +0.9
1,236,229 - -0.5
1,236,229 - +0.9
1,236,462 + LRK53_RS05275 0.18 -1.0
1,236,462 + LRK53_RS05275 0.18 -1.5
1,236,462 + LRK53_RS05275 0.18 -0.3
1,236,462 + LRK53_RS05275 0.18 -0.9
1,236,463 - LRK53_RS05275 0.18 -1.5
1,236,498 + LRK53_RS05275 0.22 -0.8
1,236,498 + LRK53_RS05275 0.22 +1.5
1,236,498 + LRK53_RS05275 0.22 +0.3
1,236,498 + LRK53_RS05275 0.22 -0.7
1,236,498 + LRK53_RS05275 0.22 +0.1
1,236,499 - LRK53_RS05275 0.23 +0.1
1,236,499 - LRK53_RS05275 0.23 +0.2
1,236,499 - LRK53_RS05275 0.23 -0.1
1,236,499 - LRK53_RS05275 0.23 -0.1
1,236,546 + LRK53_RS05275 0.29 +0.9
1,236,546 + LRK53_RS05275 0.29 -1.5
1,236,546 + LRK53_RS05275 0.29 +0.9
1,236,546 + LRK53_RS05275 0.29 +0.2
1,236,546 + LRK53_RS05275 0.29 +0.5
1,236,546 + LRK53_RS05275 0.29 +0.2
1,236,547 - LRK53_RS05275 0.29 -1.4
1,236,547 - LRK53_RS05275 0.29 -1.5
1,236,547 - LRK53_RS05275 0.29 -0.5
1,236,547 - LRK53_RS05275 0.29 +0.5
1,236,547 - LRK53_RS05275 0.29 -0.5
1,236,822 - LRK53_RS05275 0.65 +0.9
1,237,027 - +0.1
1,237,027 - -0.8
1,237,027 - +0.9
1,237,027 - -0.1
1,237,027 - -0.6
1,237,027 - -0.7
1,237,087 + -0.1
1,237,087 + -0.7
1,237,087 + -0.1
1,237,087 + +0.3
1,237,088 - -0.1
1,237,088 - -1.5
1,237,228 + LRK53_RS05280 0.18 -0.1
1,237,313 - LRK53_RS05280 0.35 -0.1
1,237,313 - LRK53_RS05280 0.35 -0.9
1,237,427 + LRK53_RS05280 0.58 +0.5
1,237,427 + LRK53_RS05280 0.58 -0.3
1,237,427 + LRK53_RS05280 0.58 -0.7
1,237,427 + LRK53_RS05280 0.58 +0.1
1,237,427 + LRK53_RS05280 0.58 -0.7
1,237,428 - LRK53_RS05280 0.58 -0.7
1,237,428 - LRK53_RS05280 0.58 +0.9
1,237,428 - LRK53_RS05280 0.58 +0.9
1,237,428 - LRK53_RS05280 0.58 +0.5
1,237,460 + LRK53_RS05280 0.64 -1.2
1,237,461 - LRK53_RS05280 0.65 -0.7
1,237,461 - LRK53_RS05280 0.65 -1.1
1,237,543 + LRK53_RS05280 0.81 +0.3
1,237,543 + LRK53_RS05280 0.81 +0.9
1,237,543 + LRK53_RS05280 0.81 +0.9
1,237,543 + LRK53_RS05280 0.81 +1.9
1,237,543 + LRK53_RS05280 0.81 +0.9
1,237,544 - LRK53_RS05280 0.81 +0.9
1,237,544 - LRK53_RS05280 0.81 -0.1
1,237,544 - LRK53_RS05280 0.81 -0.1
1,237,571 + LRK53_RS05280 0.87 -2.6
1,237,571 + LRK53_RS05280 0.87 +0.2
1,237,571 + LRK53_RS05280 0.87 -0.9
1,237,572 - LRK53_RS05280 0.87 -1.5
1,237,572 - LRK53_RS05280 0.87 -0.7
1,237,572 - LRK53_RS05280 0.87 -0.8
1,237,572 - LRK53_RS05280 0.87 +0.6
1,237,612 - -0.4
1,237,890 + LRK53_RS05285 0.22 -1.4
1,237,891 - LRK53_RS05285 0.22 -1.5
1,237,953 + LRK53_RS05285 0.29 -2.4
1,237,956 + LRK53_RS05285 0.29 -0.7
1,237,956 + LRK53_RS05285 0.29 -0.5
1,237,956 + LRK53_RS05285 0.29 -0.7
1,237,957 - LRK53_RS05285 0.29 -1.1
1,237,957 - LRK53_RS05285 0.29 +0.1
1,237,957 - LRK53_RS05285 0.29 -2.1
1,238,096 + LRK53_RS05285 0.44 -0.7
1,238,096 + LRK53_RS05285 0.44 +0.9
1,238,096 + LRK53_RS05285 0.44 -0.2
1,238,096 + LRK53_RS05285 0.44 -1.1
1,238,096 + LRK53_RS05285 0.44 -0.9
1,238,096 + LRK53_RS05285 0.44 -1.1
1,238,097 - LRK53_RS05285 0.44 -0.1
1,238,097 - LRK53_RS05285 0.44 -0.1
1,238,097 - LRK53_RS05285 0.44 +0.6
1,238,097 - LRK53_RS05285 0.44 +0.5
1,238,136 + LRK53_RS05285 0.49 +0.3
1,238,136 + LRK53_RS05285 0.49 -1.1
1,238,136 + LRK53_RS05285 0.49 -0.7
1,238,136 + LRK53_RS05285 0.49 -0.1
1,238,136 + LRK53_RS05285 0.49 -0.4
1,238,136 + LRK53_RS05285 0.49 -0.3
1,238,136 + LRK53_RS05285 0.49 -1.9
1,238,136 + LRK53_RS05285 0.49 -0.7
1,238,136 + LRK53_RS05285 0.49 -0.6
1,238,136 + LRK53_RS05285 0.49 -0.5
1,238,136 + LRK53_RS05285 0.49 -0.5
1,238,136 + LRK53_RS05285 0.49 -0.7
1,238,136 + LRK53_RS05285 0.49 -1.9
1,238,136 + LRK53_RS05285 0.49 -0.7
1,238,136 + LRK53_RS05285 0.49 +0.9
1,238,136 + LRK53_RS05285 0.49 +0.3
1,238,136 + LRK53_RS05285 0.49 -0.7
1,238,136 + LRK53_RS05285 0.49 -1.9
1,238,136 + LRK53_RS05285 0.49 -1.9
1,238,136 + LRK53_RS05285 0.49 +0.9
1,238,136 + LRK53_RS05285 0.49 -0.3
1,238,137 - LRK53_RS05285 0.49 -1.2
1,238,137 - LRK53_RS05285 0.49 -0.5
1,238,137 - LRK53_RS05285 0.49 +0.9
1,238,137 - LRK53_RS05285 0.49 -0.1
1,238,137 - LRK53_RS05285 0.49 -0.7
1,238,137 - LRK53_RS05285 0.49 +0.3
1,238,137 - LRK53_RS05285 0.49 -1.0
1,238,137 - LRK53_RS05285 0.49 -0.1
1,238,137 - LRK53_RS05285 0.49 +0.9
1,238,137 - LRK53_RS05285 0.49 +0.7
1,238,137 - LRK53_RS05285 0.49 -0.8
1,238,137 - LRK53_RS05285 0.49 +0.5
1,238,137 - LRK53_RS05285 0.49 -0.1
1,238,137 - LRK53_RS05285 0.49 -0.4
1,238,137 - LRK53_RS05285 0.49 -1.5
1,238,137 - LRK53_RS05285 0.49 +0.9
1,238,137 - LRK53_RS05285 0.49 -0.1
1,238,167 + LRK53_RS05285 0.52 +0.9
1,238,168 - LRK53_RS05285 0.52 +3.2
1,238,283 + LRK53_RS05285 0.65 -1.1
1,238,283 + LRK53_RS05285 0.65 +0.9
1,238,284 - LRK53_RS05285 0.65 -0.1
1,238,284 - LRK53_RS05285 0.65 -0.1
1,238,284 - LRK53_RS05285 0.65 +0.3
1,238,397 + LRK53_RS05285 0.77 -1.1
1,238,544 + -0.7
1,238,544 + -0.1
1,238,544 + -1.0
1,238,544 + -2.5
1,238,544 + +0.4
1,238,544 + -0.4
1,238,545 - +0.3
1,238,545 - +0.9
1,238,545 - -2.1
1,238,628 - -0.1
1,238,628 - +0.2

Or see this region's nucleotide sequence