Experiment: defined media with L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS04005 and LRK53_RS04010 are separated by 204 nucleotides LRK53_RS04010 and LRK53_RS04015 are separated by 610 nucleotides
LRK53_RS04005: LRK53_RS04005 - DegV family protein, at 934,798 to 935,742
_RS04005
LRK53_RS04010: LRK53_RS04010 - AMP nucleosidase, at 935,947 to 936,738
_RS04010
LRK53_RS04015: LRK53_RS04015 - TonB-dependent receptor, at 937,349 to 940,288
_RS04015
Position (kb) 935
936
937 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 934.976 kb on + strand, within LRK53_RS04005 at 934.976 kb on + strand, within LRK53_RS04005 at 934.976 kb on + strand, within LRK53_RS04005 at 934.976 kb on + strand, within LRK53_RS04005 at 934.976 kb on + strand, within LRK53_RS04005 at 934.976 kb on + strand, within LRK53_RS04005 at 934.976 kb on + strand, within LRK53_RS04005 at 934.976 kb on + strand, within LRK53_RS04005 at 934.976 kb on + strand, within LRK53_RS04005 at 934.976 kb on + strand, within LRK53_RS04005 at 934.976 kb on + strand, within LRK53_RS04005 at 934.977 kb on - strand, within LRK53_RS04005 at 934.977 kb on - strand, within LRK53_RS04005 at 934.977 kb on - strand, within LRK53_RS04005 at 934.977 kb on - strand, within LRK53_RS04005 at 934.977 kb on - strand, within LRK53_RS04005 at 934.977 kb on - strand, within LRK53_RS04005 at 935.031 kb on - strand, within LRK53_RS04005 at 935.222 kb on + strand, within LRK53_RS04005 at 935.222 kb on + strand, within LRK53_RS04005 at 935.222 kb on + strand, within LRK53_RS04005 at 935.222 kb on + strand, within LRK53_RS04005 at 935.222 kb on + strand, within LRK53_RS04005 at 935.222 kb on + strand, within LRK53_RS04005 at 935.222 kb on + strand, within LRK53_RS04005 at 935.222 kb on + strand, within LRK53_RS04005 at 935.222 kb on + strand, within LRK53_RS04005 at 935.222 kb on + strand, within LRK53_RS04005 at 935.222 kb on + strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.223 kb on - strand, within LRK53_RS04005 at 935.228 kb on + strand, within LRK53_RS04005 at 935.228 kb on + strand, within LRK53_RS04005 at 935.228 kb on + strand, within LRK53_RS04005 at 935.228 kb on + strand, within LRK53_RS04005 at 935.228 kb on + strand, within LRK53_RS04005 at 935.228 kb on + strand, within LRK53_RS04005 at 935.228 kb on + strand, within LRK53_RS04005 at 935.229 kb on - strand, within LRK53_RS04005 at 935.229 kb on - strand, within LRK53_RS04005 at 935.229 kb on - strand, within LRK53_RS04005 at 935.229 kb on - strand, within LRK53_RS04005 at 935.229 kb on - strand, within LRK53_RS04005 at 935.229 kb on - strand, within LRK53_RS04005 at 935.229 kb on - strand, within LRK53_RS04005 at 935.229 kb on - strand, within LRK53_RS04005 at 935.229 kb on - strand, within LRK53_RS04005 at 935.405 kb on + strand, within LRK53_RS04005 at 935.405 kb on + strand, within LRK53_RS04005 at 935.405 kb on + strand, within LRK53_RS04005 at 935.405 kb on + strand, within LRK53_RS04005 at 935.406 kb on - strand, within LRK53_RS04005 at 935.406 kb on - strand, within LRK53_RS04005 at 935.406 kb on - strand, within LRK53_RS04005 at 935.406 kb on - strand, within LRK53_RS04005 at 935.406 kb on - strand, within LRK53_RS04005 at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.779 kb on + strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.780 kb on - strand at 935.797 kb on - strand at 935.874 kb on + strand at 935.874 kb on + strand at 935.874 kb on + strand at 935.875 kb on - strand at 935.875 kb on - strand at 935.875 kb on - strand at 935.875 kb on - strand at 936.049 kb on + strand, within LRK53_RS04010 at 936.049 kb on + strand, within LRK53_RS04010 at 936.049 kb on + strand, within LRK53_RS04010 at 936.049 kb on + strand, within LRK53_RS04010 at 936.050 kb on - strand, within LRK53_RS04010 at 936.086 kb on + strand, within LRK53_RS04010 at 936.086 kb on + strand, within LRK53_RS04010 at 936.086 kb on + strand, within LRK53_RS04010 at 936.086 kb on + strand, within LRK53_RS04010 at 936.086 kb on + strand, within LRK53_RS04010 at 936.086 kb on + strand, within LRK53_RS04010 at 936.086 kb on + strand, within LRK53_RS04010 at 936.313 kb on + strand, within LRK53_RS04010 at 936.313 kb on + strand, within LRK53_RS04010 at 936.313 kb on + strand, within LRK53_RS04010 at 936.314 kb on - strand, within LRK53_RS04010 at 936.314 kb on - strand, within LRK53_RS04010 at 936.415 kb on + strand, within LRK53_RS04010 at 936.415 kb on + strand, within LRK53_RS04010 at 936.415 kb on + strand, within LRK53_RS04010 at 936.415 kb on + strand, within LRK53_RS04010 at 936.415 kb on + strand, within LRK53_RS04010 at 936.415 kb on + strand, within LRK53_RS04010 at 936.415 kb on + strand, within LRK53_RS04010 at 936.415 kb on + strand, within LRK53_RS04010 at 936.415 kb on + strand, within LRK53_RS04010 at 936.416 kb on - strand, within LRK53_RS04010 at 936.416 kb on - strand, within LRK53_RS04010 at 936.416 kb on - strand, within LRK53_RS04010 at 936.416 kb on - strand, within LRK53_RS04010 at 936.416 kb on - strand, within LRK53_RS04010 at 936.416 kb on - strand, within LRK53_RS04010 at 936.416 kb on - strand, within LRK53_RS04010 at 936.416 kb on - strand, within LRK53_RS04010 at 936.463 kb on + strand, within LRK53_RS04010 at 936.463 kb on + strand, within LRK53_RS04010 at 936.463 kb on + strand, within LRK53_RS04010 at 936.464 kb on - strand, within LRK53_RS04010 at 936.464 kb on - strand, within LRK53_RS04010 at 936.464 kb on - strand, within LRK53_RS04010 at 936.464 kb on - strand, within LRK53_RS04010 at 936.464 kb on - strand, within LRK53_RS04010 at 936.464 kb on - strand, within LRK53_RS04010 at 937.081 kb on + strand at 937.095 kb on + strand at 937.095 kb on + strand at 937.095 kb on + strand at 937.096 kb on - strand at 937.096 kb on - strand at 937.096 kb on - strand at 937.096 kb on - strand at 937.096 kb on - strand at 937.096 kb on - strand at 937.107 kb on - strand at 937.109 kb on + strand at 937.109 kb on + strand at 937.109 kb on + strand at 937.109 kb on + strand at 937.109 kb on + strand at 937.109 kb on + strand at 937.109 kb on + strand at 937.109 kb on + strand at 937.109 kb on + strand at 937.109 kb on + strand at 937.109 kb on + strand at 937.109 kb on + strand at 937.109 kb on + strand at 937.109 kb on + strand at 937.109 kb on + strand at 937.110 kb on - strand at 937.110 kb on - strand at 937.110 kb on - strand at 937.110 kb on - strand at 937.110 kb on - strand at 937.110 kb on - strand at 937.110 kb on - strand at 937.110 kb on - strand at 937.218 kb on + strand at 937.218 kb on + strand at 937.218 kb on + strand at 937.218 kb on + strand at 937.218 kb on + strand at 937.218 kb on + strand at 937.219 kb on - strand at 937.219 kb on - strand at 937.229 kb on + strand at 937.229 kb on + strand at 937.229 kb on + strand at 937.230 kb on - strand at 937.233 kb on - strand at 937.233 kb on - strand at 937.319 kb on + strand at 937.320 kb on - strand at 937.419 kb on + strand at 937.419 kb on + strand at 937.419 kb on + strand at 937.419 kb on + strand at 937.419 kb on + strand at 937.419 kb on + strand at 937.419 kb on + strand at 937.419 kb on + strand at 937.419 kb on + strand at 937.419 kb on + strand at 937.419 kb on + strand at 937.420 kb on - strand at 937.420 kb on - strand at 937.420 kb on - strand at 937.420 kb on - strand at 937.420 kb on - strand at 937.420 kb on - strand at 937.420 kb on - strand at 937.420 kb on - strand at 937.420 kb on - strand at 937.420 kb on - strand at 937.420 kb on - strand at 937.420 kb on - strand at 937.420 kb on - strand at 937.420 kb on - strand at 937.420 kb on - strand at 937.420 kb on - strand at 937.423 kb on + strand at 937.423 kb on + strand at 937.423 kb on + strand at 937.423 kb on + strand at 937.423 kb on + strand at 937.423 kb on + strand at 937.423 kb on + strand at 937.424 kb on - strand at 937.424 kb on - strand at 937.424 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with L-Serine remove 934,976 + LRK53_RS04005 0.19 -1.1 934,976 + LRK53_RS04005 0.19 -0.1 934,976 + LRK53_RS04005 0.19 -0.6 934,976 + LRK53_RS04005 0.19 +1.5 934,976 + LRK53_RS04005 0.19 -1.4 934,976 + LRK53_RS04005 0.19 -1.6 934,976 + LRK53_RS04005 0.19 -0.6 934,976 + LRK53_RS04005 0.19 -1.6 934,976 + LRK53_RS04005 0.19 -0.6 934,976 + LRK53_RS04005 0.19 +0.4 934,976 + LRK53_RS04005 0.19 +0.9 934,977 - LRK53_RS04005 0.19 -0.8 934,977 - LRK53_RS04005 0.19 -0.2 934,977 - LRK53_RS04005 0.19 +2.5 934,977 - LRK53_RS04005 0.19 -1.5 934,977 - LRK53_RS04005 0.19 -1.2 934,977 - LRK53_RS04005 0.19 -0.4 935,031 - LRK53_RS04005 0.25 +0.9 935,222 + LRK53_RS04005 0.45 +1.5 935,222 + LRK53_RS04005 0.45 -1.2 935,222 + LRK53_RS04005 0.45 +0.9 935,222 + LRK53_RS04005 0.45 -0.8 935,222 + LRK53_RS04005 0.45 -1.2 935,222 + LRK53_RS04005 0.45 -1.1 935,222 + LRK53_RS04005 0.45 -1.9 935,222 + LRK53_RS04005 0.45 -0.6 935,222 + LRK53_RS04005 0.45 +0.9 935,222 + LRK53_RS04005 0.45 +0.9 935,222 + LRK53_RS04005 0.45 -0.6 935,223 - LRK53_RS04005 0.45 +1.9 935,223 - LRK53_RS04005 0.45 -0.6 935,223 - LRK53_RS04005 0.45 +0.9 935,223 - LRK53_RS04005 0.45 -0.5 935,223 - LRK53_RS04005 0.45 -1.6 935,223 - LRK53_RS04005 0.45 -0.6 935,223 - LRK53_RS04005 0.45 -0.1 935,223 - LRK53_RS04005 0.45 -0.9 935,223 - LRK53_RS04005 0.45 -0.1 935,223 - LRK53_RS04005 0.45 -0.1 935,223 - LRK53_RS04005 0.45 -0.1 935,223 - LRK53_RS04005 0.45 -1.1 935,223 - LRK53_RS04005 0.45 -0.1 935,223 - LRK53_RS04005 0.45 -2.2 935,228 + LRK53_RS04005 0.46 +0.9 935,228 + LRK53_RS04005 0.46 +0.4 935,228 + LRK53_RS04005 0.46 -0.4 935,228 + LRK53_RS04005 0.46 -0.5 935,228 + LRK53_RS04005 0.46 -2.1 935,228 + LRK53_RS04005 0.46 +0.9 935,228 + LRK53_RS04005 0.46 -1.4 935,229 - LRK53_RS04005 0.46 -0.1 935,229 - LRK53_RS04005 0.46 +0.6 935,229 - LRK53_RS04005 0.46 +0.9 935,229 - LRK53_RS04005 0.46 -2.2 935,229 - LRK53_RS04005 0.46 -0.1 935,229 - LRK53_RS04005 0.46 +0.4 935,229 - LRK53_RS04005 0.46 -1.5 935,229 - LRK53_RS04005 0.46 -1.0 935,229 - LRK53_RS04005 0.46 -0.2 935,405 + LRK53_RS04005 0.64 -1.3 935,405 + LRK53_RS04005 0.64 -2.4 935,405 + LRK53_RS04005 0.64 +0.9 935,405 + LRK53_RS04005 0.64 -0.3 935,406 - LRK53_RS04005 0.64 -0.1 935,406 - LRK53_RS04005 0.64 -1.6 935,406 - LRK53_RS04005 0.64 -1.4 935,406 - LRK53_RS04005 0.64 -0.1 935,406 - LRK53_RS04005 0.64 -1.1 935,779 + -1.3 935,779 + +0.9 935,779 + -0.1 935,779 + -0.3 935,779 + -0.1 935,779 + -0.4 935,779 + +0.9 935,779 + -1.4 935,779 + -0.1 935,779 + -1.0 935,779 + -0.6 935,779 + -0.3 935,779 + +1.9 935,779 + -0.6 935,779 + +0.9 935,779 + +0.9 935,779 + -1.8 935,779 + -1.1 935,779 + +0.4 935,779 + -0.8 935,779 + -0.3 935,779 + -0.1 935,780 - -1.1 935,780 - -0.1 935,780 - -0.4 935,780 - -0.1 935,780 - +0.9 935,780 - -1.9 935,780 - +0.4 935,780 - -1.8 935,780 - -0.9 935,780 - -0.1 935,780 - +0.9 935,780 - -0.1 935,780 - -0.6 935,780 - -1.9 935,780 - +0.9 935,780 - -0.6 935,780 - +0.9 935,780 - +1.9 935,780 - -0.9 935,780 - +0.9 935,780 - -1.2 935,797 - -0.9 935,874 + -1.4 935,874 + -0.4 935,874 + +1.3 935,875 - +0.4 935,875 - -1.2 935,875 - -1.2 935,875 - -0.1 936,049 + LRK53_RS04010 0.13 -1.0 936,049 + LRK53_RS04010 0.13 -0.9 936,049 + LRK53_RS04010 0.13 -0.4 936,049 + LRK53_RS04010 0.13 +1.9 936,050 - LRK53_RS04010 0.13 +0.9 936,086 + LRK53_RS04010 0.18 -0.1 936,086 + LRK53_RS04010 0.18 -1.6 936,086 + LRK53_RS04010 0.18 -0.6 936,086 + LRK53_RS04010 0.18 +0.9 936,086 + LRK53_RS04010 0.18 -0.1 936,086 + LRK53_RS04010 0.18 +1.5 936,086 + LRK53_RS04010 0.18 +0.9 936,313 + LRK53_RS04010 0.46 +0.3 936,313 + LRK53_RS04010 0.46 +0.2 936,313 + LRK53_RS04010 0.46 -0.1 936,314 - LRK53_RS04010 0.46 -1.1 936,314 - LRK53_RS04010 0.46 +0.5 936,415 + LRK53_RS04010 0.59 -0.7 936,415 + LRK53_RS04010 0.59 +0.9 936,415 + LRK53_RS04010 0.59 -1.3 936,415 + LRK53_RS04010 0.59 +0.3 936,415 + LRK53_RS04010 0.59 -0.4 936,415 + LRK53_RS04010 0.59 -0.5 936,415 + LRK53_RS04010 0.59 -0.8 936,415 + LRK53_RS04010 0.59 -0.0 936,415 + LRK53_RS04010 0.59 -2.0 936,416 - LRK53_RS04010 0.59 -1.6 936,416 - LRK53_RS04010 0.59 +2.5 936,416 - LRK53_RS04010 0.59 +0.6 936,416 - LRK53_RS04010 0.59 -0.9 936,416 - LRK53_RS04010 0.59 +0.0 936,416 - LRK53_RS04010 0.59 +0.9 936,416 - LRK53_RS04010 0.59 +0.9 936,416 - LRK53_RS04010 0.59 -0.6 936,463 + LRK53_RS04010 0.65 -0.4 936,463 + LRK53_RS04010 0.65 -0.2 936,463 + LRK53_RS04010 0.65 -0.6 936,464 - LRK53_RS04010 0.65 -0.5 936,464 - LRK53_RS04010 0.65 -0.8 936,464 - LRK53_RS04010 0.65 -1.1 936,464 - LRK53_RS04010 0.65 -0.5 936,464 - LRK53_RS04010 0.65 -0.1 936,464 - LRK53_RS04010 0.65 -0.6 937,081 + -1.0 937,095 + +0.9 937,095 + -1.1 937,095 + -0.1 937,096 - +1.5 937,096 - +0.9 937,096 - -0.3 937,096 - +1.9 937,096 - +2.5 937,096 - -0.1 937,107 - -1.4 937,109 + -0.1 937,109 + -0.1 937,109 + +1.3 937,109 + -0.2 937,109 + +0.9 937,109 + +2.5 937,109 + -0.1 937,109 + -1.4 937,109 + -2.5 937,109 + -1.6 937,109 + -0.5 937,109 + -1.6 937,109 + +1.3 937,109 + +0.9 937,109 + +1.4 937,110 - -1.6 937,110 - -0.1 937,110 - +0.6 937,110 - -0.6 937,110 - -0.6 937,110 - -1.1 937,110 - -0.4 937,110 - +0.9 937,218 + +0.9 937,218 + +0.9 937,218 + +0.4 937,218 + -1.3 937,218 + -1.4 937,218 + -0.1 937,219 - +0.7 937,219 - +0.5 937,229 + -0.1 937,229 + -0.4 937,229 + -0.8 937,230 - +0.6 937,233 - -1.4 937,233 - +0.5 937,319 + +0.4 937,320 - -0.6 937,419 + -0.6 937,419 + +0.9 937,419 + +0.5 937,419 + +0.9 937,419 + -0.4 937,419 + -0.3 937,419 + -1.2 937,419 + -1.2 937,419 + -0.1 937,419 + +2.9 937,419 + -0.4 937,420 - +0.4 937,420 - -0.4 937,420 - -0.6 937,420 - -0.1 937,420 - +0.6 937,420 - +0.9 937,420 - -1.6 937,420 - -0.6 937,420 - -2.1 937,420 - -0.1 937,420 - +0.9 937,420 - +0.9 937,420 - +1.5 937,420 - +0.9 937,420 - -0.6 937,420 - +0.6 937,423 + -1.1 937,423 + -2.6 937,423 + -0.3 937,423 + -0.2 937,423 + +1.5 937,423 + -0.8 937,423 + +0.1 937,424 - +1.3 937,424 - +1.9 937,424 - +1.9
Or see this region's nucleotide sequence