Experiment: defined media with L-Serine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00060 and LRK53_RS00065 are separated by 7 nucleotides LRK53_RS00065 and LRK53_RS00070 are separated by 20 nucleotides
LRK53_RS00060: LRK53_RS00060 - hybrid sensor histidine kinase/response regulator, at 12,307 to 15,789
_RS00060
LRK53_RS00065: LRK53_RS00065 - glutamate synthase subunit beta, at 15,797 to 17,260
_RS00065
LRK53_RS00070: LRK53_RS00070 - glutamate synthase-related protein, at 17,281 to 21,984
_RS00070
Position (kb) 15
16
17
18 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 14.887 kb on + strand, within LRK53_RS00060 at 14.887 kb on + strand, within LRK53_RS00060 at 14.887 kb on + strand, within LRK53_RS00060 at 14.887 kb on + strand, within LRK53_RS00060 at 14.887 kb on + strand, within LRK53_RS00060 at 14.887 kb on + strand, within LRK53_RS00060 at 14.887 kb on + strand, within LRK53_RS00060 at 14.888 kb on - strand, within LRK53_RS00060 at 14.888 kb on - strand, within LRK53_RS00060 at 14.888 kb on - strand, within LRK53_RS00060 at 14.888 kb on - strand, within LRK53_RS00060 at 14.888 kb on - strand, within LRK53_RS00060 at 14.888 kb on - strand, within LRK53_RS00060 at 14.888 kb on - strand, within LRK53_RS00060 at 14.888 kb on - strand, within LRK53_RS00060 at 14.888 kb on - strand, within LRK53_RS00060 at 14.888 kb on - strand, within LRK53_RS00060 at 14.888 kb on - strand, within LRK53_RS00060 at 15.070 kb on + strand, within LRK53_RS00060 at 15.070 kb on + strand, within LRK53_RS00060 at 15.070 kb on + strand, within LRK53_RS00060 at 15.071 kb on - strand, within LRK53_RS00060 at 15.071 kb on - strand, within LRK53_RS00060 at 15.419 kb on + strand, within LRK53_RS00060 at 15.419 kb on + strand, within LRK53_RS00060 at 15.419 kb on + strand, within LRK53_RS00060 at 15.419 kb on + strand, within LRK53_RS00060 at 15.419 kb on + strand, within LRK53_RS00060 at 15.420 kb on - strand, within LRK53_RS00060 at 15.420 kb on - strand, within LRK53_RS00060 at 15.420 kb on - strand, within LRK53_RS00060 at 15.420 kb on - strand, within LRK53_RS00060 at 15.420 kb on - strand, within LRK53_RS00060 at 15.420 kb on - strand, within LRK53_RS00060 at 15.441 kb on + strand at 15.441 kb on + strand at 15.441 kb on + strand at 15.442 kb on - strand at 15.442 kb on - strand at 15.562 kb on + strand at 15.562 kb on + strand at 15.562 kb on + strand at 15.562 kb on + strand at 15.562 kb on + strand at 15.562 kb on + strand at 15.562 kb on + strand at 15.563 kb on - strand at 15.698 kb on - strand at 16.019 kb on + strand, within LRK53_RS00065 at 16.019 kb on + strand, within LRK53_RS00065 at 16.019 kb on + strand, within LRK53_RS00065 at 16.020 kb on - strand, within LRK53_RS00065 at 16.020 kb on - strand, within LRK53_RS00065 at 16.243 kb on - strand, within LRK53_RS00065 at 16.243 kb on - strand, within LRK53_RS00065 at 16.243 kb on - strand, within LRK53_RS00065 at 16.542 kb on + strand, within LRK53_RS00065 at 16.542 kb on + strand, within LRK53_RS00065 at 16.542 kb on + strand, within LRK53_RS00065 at 16.542 kb on + strand, within LRK53_RS00065 at 16.542 kb on + strand, within LRK53_RS00065 at 16.543 kb on - strand, within LRK53_RS00065 at 16.543 kb on - strand, within LRK53_RS00065 at 16.543 kb on - strand, within LRK53_RS00065 at 16.543 kb on - strand, within LRK53_RS00065 at 16.543 kb on - strand, within LRK53_RS00065 at 16.543 kb on - strand, within LRK53_RS00065 at 16.543 kb on - strand, within LRK53_RS00065 at 17.046 kb on + strand, within LRK53_RS00065 at 17.046 kb on + strand, within LRK53_RS00065 at 17.046 kb on + strand, within LRK53_RS00065 at 17.047 kb on - strand, within LRK53_RS00065 at 17.047 kb on - strand, within LRK53_RS00065 at 17.348 kb on + strand at 17.348 kb on + strand at 17.348 kb on + strand at 17.349 kb on - strand at 17.349 kb on - strand at 17.349 kb on - strand at 17.349 kb on - strand at 17.349 kb on - strand at 17.349 kb on - strand at 17.349 kb on - strand at 17.349 kb on - strand at 17.349 kb on - strand at 17.349 kb on - strand at 17.349 kb on - strand at 17.430 kb on + strand at 17.430 kb on + strand at 17.430 kb on + strand at 17.430 kb on + strand at 17.430 kb on + strand at 17.431 kb on - strand at 17.431 kb on - strand at 17.432 kb on + strand at 17.433 kb on - strand at 17.433 kb on - strand at 17.433 kb on - strand at 17.433 kb on - strand at 17.615 kb on + strand at 17.615 kb on + strand at 17.615 kb on + strand at 17.616 kb on - strand at 17.616 kb on - strand at 17.616 kb on - strand at 17.616 kb on - strand at 17.616 kb on - strand at 17.616 kb on - strand at 17.616 kb on - strand at 17.616 kb on - strand at 17.616 kb on - strand at 17.616 kb on - strand at 17.621 kb on + strand at 17.621 kb on + strand at 17.621 kb on + strand at 17.621 kb on + strand at 17.621 kb on + strand at 17.621 kb on + strand at 17.621 kb on + strand at 17.621 kb on + strand at 17.621 kb on + strand at 17.621 kb on + strand at 17.621 kb on + strand at 17.622 kb on - strand at 17.622 kb on - strand at 17.622 kb on - strand at 17.622 kb on - strand at 17.622 kb on - strand at 17.622 kb on - strand at 17.622 kb on - strand at 17.622 kb on - strand at 17.622 kb on - strand at 17.622 kb on - strand at 17.699 kb on + strand at 17.699 kb on + strand at 17.699 kb on + strand at 17.699 kb on + strand at 17.699 kb on + strand at 17.699 kb on + strand at 17.699 kb on + strand at 17.699 kb on + strand at 17.699 kb on + strand at 17.699 kb on + strand at 17.699 kb on + strand at 17.699 kb on + strand at 17.699 kb on + strand at 17.699 kb on + strand at 17.699 kb on + strand at 17.699 kb on + strand at 17.699 kb on + strand at 17.699 kb on + strand at 17.699 kb on + strand at 17.699 kb on + strand at 17.699 kb on + strand at 17.699 kb on + strand at 17.699 kb on + strand at 17.699 kb on + strand at 17.700 kb on - strand at 17.700 kb on - strand at 17.700 kb on - strand at 17.700 kb on - strand at 17.700 kb on - strand at 17.700 kb on - strand at 17.700 kb on - strand at 17.700 kb on - strand at 17.700 kb on - strand at 17.700 kb on - strand at 17.700 kb on - strand at 17.700 kb on - strand at 17.700 kb on - strand at 17.700 kb on - strand at 17.700 kb on - strand at 17.700 kb on - strand at 17.700 kb on - strand at 17.700 kb on - strand at 17.700 kb on - strand at 17.700 kb on - strand at 17.700 kb on - strand at 17.700 kb on - strand at 17.700 kb on - strand at 17.700 kb on - strand at 17.789 kb on + strand, within LRK53_RS00070 at 17.789 kb on + strand, within LRK53_RS00070 at 17.789 kb on + strand, within LRK53_RS00070 at 17.789 kb on + strand, within LRK53_RS00070 at 17.789 kb on + strand, within LRK53_RS00070 at 17.789 kb on + strand, within LRK53_RS00070 at 17.789 kb on + strand, within LRK53_RS00070 at 17.789 kb on + strand, within LRK53_RS00070 at 17.790 kb on - strand, within LRK53_RS00070 at 17.790 kb on - strand, within LRK53_RS00070 at 17.790 kb on - strand, within LRK53_RS00070 at 17.790 kb on - strand, within LRK53_RS00070 at 17.790 kb on - strand, within LRK53_RS00070 at 17.790 kb on - strand, within LRK53_RS00070 at 17.790 kb on - strand, within LRK53_RS00070 at 17.813 kb on + strand, within LRK53_RS00070 at 17.813 kb on + strand, within LRK53_RS00070 at 17.813 kb on + strand, within LRK53_RS00070 at 17.814 kb on - strand, within LRK53_RS00070 at 17.814 kb on - strand, within LRK53_RS00070 at 17.814 kb on - strand, within LRK53_RS00070 at 17.915 kb on + strand, within LRK53_RS00070 at 17.915 kb on + strand, within LRK53_RS00070 at 17.915 kb on + strand, within LRK53_RS00070 at 17.915 kb on + strand, within LRK53_RS00070 at 17.915 kb on + strand, within LRK53_RS00070 at 17.915 kb on + strand, within LRK53_RS00070 at 17.915 kb on + strand, within LRK53_RS00070 at 17.915 kb on + strand, within LRK53_RS00070 at 17.915 kb on + strand, within LRK53_RS00070 at 17.915 kb on + strand, within LRK53_RS00070 at 17.915 kb on + strand, within LRK53_RS00070 at 17.915 kb on + strand, within LRK53_RS00070 at 17.915 kb on + strand, within LRK53_RS00070 at 17.915 kb on + strand, within LRK53_RS00070 at 17.915 kb on + strand, within LRK53_RS00070 at 17.916 kb on - strand, within LRK53_RS00070 at 17.916 kb on - strand, within LRK53_RS00070 at 17.916 kb on - strand, within LRK53_RS00070 at 17.916 kb on - strand, within LRK53_RS00070 at 17.916 kb on - strand, within LRK53_RS00070 at 17.916 kb on - strand, within LRK53_RS00070 at 17.916 kb on - strand, within LRK53_RS00070 at 17.916 kb on - strand, within LRK53_RS00070 at 17.916 kb on - strand, within LRK53_RS00070 at 17.916 kb on - strand, within LRK53_RS00070 at 17.916 kb on - strand, within LRK53_RS00070 at 17.916 kb on - strand, within LRK53_RS00070
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with L-Serine remove 14,887 + LRK53_RS00060 0.74 +0.5 14,887 + LRK53_RS00060 0.74 -0.2 14,887 + LRK53_RS00060 0.74 -0.1 14,887 + LRK53_RS00060 0.74 -0.7 14,887 + LRK53_RS00060 0.74 -0.4 14,887 + LRK53_RS00060 0.74 -0.4 14,887 + LRK53_RS00060 0.74 -0.2 14,888 - LRK53_RS00060 0.74 -0.7 14,888 - LRK53_RS00060 0.74 +1.2 14,888 - LRK53_RS00060 0.74 -0.1 14,888 - LRK53_RS00060 0.74 -0.4 14,888 - LRK53_RS00060 0.74 -0.4 14,888 - LRK53_RS00060 0.74 -1.4 14,888 - LRK53_RS00060 0.74 +0.2 14,888 - LRK53_RS00060 0.74 +0.8 14,888 - LRK53_RS00060 0.74 -2.1 14,888 - LRK53_RS00060 0.74 -0.3 14,888 - LRK53_RS00060 0.74 +0.6 15,070 + LRK53_RS00060 0.79 -0.2 15,070 + LRK53_RS00060 0.79 -1.6 15,070 + LRK53_RS00060 0.79 -0.1 15,071 - LRK53_RS00060 0.79 -0.4 15,071 - LRK53_RS00060 0.79 -1.4 15,419 + LRK53_RS00060 0.89 +0.2 15,419 + LRK53_RS00060 0.89 -2.0 15,419 + LRK53_RS00060 0.89 +2.2 15,419 + LRK53_RS00060 0.89 -0.8 15,419 + LRK53_RS00060 0.89 +0.6 15,420 - LRK53_RS00060 0.89 +0.1 15,420 - LRK53_RS00060 0.89 -1.1 15,420 - LRK53_RS00060 0.89 +0.2 15,420 - LRK53_RS00060 0.89 -1.4 15,420 - LRK53_RS00060 0.89 -0.4 15,420 - LRK53_RS00060 0.89 -0.9 15,441 + -0.4 15,441 + -0.8 15,441 + +1.2 15,442 - -1.1 15,442 - -1.2 15,562 + +0.0 15,562 + -1.7 15,562 + -0.4 15,562 + -0.4 15,562 + -1.1 15,562 + -0.7 15,562 + +0.3 15,563 - -0.4 15,698 - -0.4 16,019 + LRK53_RS00065 0.15 -0.4 16,019 + LRK53_RS00065 0.15 -1.8 16,019 + LRK53_RS00065 0.15 -3.0 16,020 - LRK53_RS00065 0.15 -2.4 16,020 - LRK53_RS00065 0.15 -1.8 16,243 - LRK53_RS00065 0.30 -1.8 16,243 - LRK53_RS00065 0.30 -4.4 16,243 - LRK53_RS00065 0.30 -0.8 16,542 + LRK53_RS00065 0.51 -1.6 16,542 + LRK53_RS00065 0.51 -1.8 16,542 + LRK53_RS00065 0.51 -1.4 16,542 + LRK53_RS00065 0.51 -2.4 16,542 + LRK53_RS00065 0.51 -1.1 16,543 - LRK53_RS00065 0.51 -2.9 16,543 - LRK53_RS00065 0.51 -1.4 16,543 - LRK53_RS00065 0.51 -2.3 16,543 - LRK53_RS00065 0.51 +1.2 16,543 - LRK53_RS00065 0.51 -2.7 16,543 - LRK53_RS00065 0.51 -3.9 16,543 - LRK53_RS00065 0.51 +0.2 17,046 + LRK53_RS00065 0.85 -2.3 17,046 + LRK53_RS00065 0.85 +0.2 17,046 + LRK53_RS00065 0.85 -0.8 17,047 - LRK53_RS00065 0.85 +0.6 17,047 - LRK53_RS00065 0.85 -2.4 17,348 + -1.1 17,348 + -3.8 17,348 + -4.0 17,349 - -0.5 17,349 - -0.1 17,349 - +2.2 17,349 - -1.2 17,349 - -1.6 17,349 - -2.1 17,349 - -2.4 17,349 - -1.4 17,349 - +0.2 17,349 - -0.4 17,349 - -2.3 17,430 + +1.2 17,430 + -2.7 17,430 + +0.2 17,430 + -2.5 17,430 + -0.4 17,431 - +0.2 17,431 - +0.2 17,432 + -1.8 17,433 - -0.8 17,433 - +1.2 17,433 - -2.0 17,433 - -4.0 17,615 + -3.0 17,615 + -2.7 17,615 + -2.1 17,616 - +1.2 17,616 - -1.4 17,616 - -1.1 17,616 - -2.4 17,616 - +1.2 17,616 - -2.7 17,616 - -2.3 17,616 - -3.0 17,616 - -1.1 17,616 - -1.4 17,621 + -2.4 17,621 + +1.2 17,621 + -1.1 17,621 + -3.4 17,621 + -1.8 17,621 + +1.2 17,621 + -2.1 17,621 + +2.2 17,621 + -0.8 17,621 + -3.3 17,621 + -2.8 17,622 - -2.8 17,622 - -1.4 17,622 - -0.4 17,622 - -2.7 17,622 - -0.8 17,622 - -2.1 17,622 - -1.6 17,622 - -0.8 17,622 - -1.4 17,622 - -1.4 17,699 + -1.1 17,699 + -1.6 17,699 + -2.0 17,699 + -1.1 17,699 + +0.2 17,699 + -1.1 17,699 + -2.6 17,699 + -1.1 17,699 + -0.4 17,699 + +0.2 17,699 + -2.4 17,699 + -2.3 17,699 + -0.4 17,699 + -0.8 17,699 + -1.1 17,699 + -1.4 17,699 + -1.4 17,699 + -1.4 17,699 + -1.8 17,699 + -1.6 17,699 + -0.8 17,699 + +1.2 17,699 + -0.8 17,699 + -1.4 17,700 - -1.6 17,700 - -1.4 17,700 - +0.2 17,700 - -2.3 17,700 - -1.6 17,700 - -2.6 17,700 - -5.3 17,700 - +1.2 17,700 - -4.3 17,700 - +1.2 17,700 - +0.2 17,700 - +0.2 17,700 - -0.8 17,700 - -1.1 17,700 - -0.8 17,700 - -0.4 17,700 - -0.8 17,700 - -2.6 17,700 - -2.4 17,700 - +0.2 17,700 - -3.3 17,700 - -2.3 17,700 - -3.3 17,700 - -0.4 17,789 + LRK53_RS00070 0.11 -0.8 17,789 + LRK53_RS00070 0.11 -1.1 17,789 + LRK53_RS00070 0.11 -2.0 17,789 + LRK53_RS00070 0.11 -0.8 17,789 + LRK53_RS00070 0.11 -3.4 17,789 + LRK53_RS00070 0.11 -1.4 17,789 + LRK53_RS00070 0.11 -1.1 17,789 + LRK53_RS00070 0.11 -0.4 17,790 - LRK53_RS00070 0.11 +1.2 17,790 - LRK53_RS00070 0.11 -1.8 17,790 - LRK53_RS00070 0.11 -0.4 17,790 - LRK53_RS00070 0.11 -1.1 17,790 - LRK53_RS00070 0.11 +0.2 17,790 - LRK53_RS00070 0.11 -4.4 17,790 - LRK53_RS00070 0.11 +1.2 17,813 + LRK53_RS00070 0.11 -4.6 17,813 + LRK53_RS00070 0.11 -2.8 17,813 + LRK53_RS00070 0.11 -2.1 17,814 - LRK53_RS00070 0.11 -0.8 17,814 - LRK53_RS00070 0.11 -3.8 17,814 - LRK53_RS00070 0.11 -2.7 17,915 + LRK53_RS00070 0.13 -2.0 17,915 + LRK53_RS00070 0.13 -2.0 17,915 + LRK53_RS00070 0.13 -0.8 17,915 + LRK53_RS00070 0.13 -3.9 17,915 + LRK53_RS00070 0.13 -1.1 17,915 + LRK53_RS00070 0.13 -1.8 17,915 + LRK53_RS00070 0.13 +0.2 17,915 + LRK53_RS00070 0.13 -1.4 17,915 + LRK53_RS00070 0.13 -2.9 17,915 + LRK53_RS00070 0.13 -0.8 17,915 + LRK53_RS00070 0.13 -2.1 17,915 + LRK53_RS00070 0.13 -5.1 17,915 + LRK53_RS00070 0.13 -4.0 17,915 + LRK53_RS00070 0.13 -1.4 17,915 + LRK53_RS00070 0.13 +1.2 17,916 - LRK53_RS00070 0.13 -0.8 17,916 - LRK53_RS00070 0.13 -0.4 17,916 - LRK53_RS00070 0.13 -0.4 17,916 - LRK53_RS00070 0.13 -0.8 17,916 - LRK53_RS00070 0.13 -1.6 17,916 - LRK53_RS00070 0.13 -4.1 17,916 - LRK53_RS00070 0.13 -1.6 17,916 - LRK53_RS00070 0.13 -2.3 17,916 - LRK53_RS00070 0.13 -1.6 17,916 - LRK53_RS00070 0.13 -3.0 17,916 - LRK53_RS00070 0.13 -3.8 17,916 - LRK53_RS00070 0.13 -0.8
Or see this region's nucleotide sequence