Strain Fitness in Escherichia coli ECRC98 around JDDGAC_20165

Experiment: K30

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	K30
3,864,618	+	nikE	JDDGAC_20155	0.55	-1.8
3,864,618	+	nikE	JDDGAC_20155	0.55	-0.5
3,864,618	+	nikE	JDDGAC_20155	0.55	-0.2
3,864,618	+	nikE	JDDGAC_20155	0.55	+0.2
3,864,619	-	nikE	JDDGAC_20155	0.56	+0.5
3,864,624	+	nikE	JDDGAC_20155	0.57	-0.2
3,864,624	+	nikE	JDDGAC_20155	0.57	-0.8
3,864,625	-	nikE	JDDGAC_20155	0.57	-0.7
3,864,721	+	nikE	JDDGAC_20155	0.81	+1.9
3,864,722	-	nikE	JDDGAC_20155	0.81	+0.5
3,864,724	-	nikE	JDDGAC_20155	0.82	+0.5
3,864,845	-				+1.1
3,864,848	-				+0.1
3,864,860	-				+0.8
3,864,974	-	nikE	JDDGAC_20160	0.21	+1.8
3,864,974	-	nikE	JDDGAC_20160	0.21	-0.9
3,865,068	+	nikE	JDDGAC_20160	0.33	-0.3
3,865,068	+	nikE	JDDGAC_20160	0.33	+0.5
3,865,250	-	nikE	JDDGAC_20160	0.56	+0.6
3,865,327	+	nikE	JDDGAC_20160	0.65	+1.2
3,865,356	+	nikE	JDDGAC_20160	0.69	+0.0
3,865,401	+	nikE	JDDGAC_20160	0.74	+0.2
3,865,402	-	nikE	JDDGAC_20160	0.74	-0.0
3,865,404	+	nikE	JDDGAC_20160	0.75	+0.5
3,865,405	-	nikE	JDDGAC_20160	0.75	-0.8
3,865,426	+	nikE	JDDGAC_20160	0.77	+0.1
3,865,571	+				+0.7
3,865,572	-				-0.5
3,865,596	+				+1.9
3,865,597	-				+0.2
3,865,600	+				+0.6
3,865,600	+				-1.4
3,865,600	+				-1.0
3,865,682	+	nikD	JDDGAC_20165	0.10	+0.6
3,865,682	+	nikD	JDDGAC_20165	0.10	-1.3
3,865,770	-	nikD	JDDGAC_20165	0.22	-0.8
3,865,812	-	nikD	JDDGAC_20165	0.27	-0.8
3,866,005	-	nikD	JDDGAC_20165	0.52	+0.3
3,866,345	+				-2.3
3,866,346	-				-0.5
3,866,349	+				+0.7
3,866,350	-				-2.0
3,866,371	-				-1.1
3,866,371	-				-1.2
3,866,434	+				+0.5
3,866,500	+	nikC	JDDGAC_20170	0.16	-0.9
3,866,500	+	nikC	JDDGAC_20170	0.16	-0.7
3,866,500	+	nikC	JDDGAC_20170	0.16	+0.7
3,866,501	-	nikC	JDDGAC_20170	0.16	-2.8
3,866,502	+	nikC	JDDGAC_20170	0.16	-0.1
3,866,503	-	nikC	JDDGAC_20170	0.16	+0.1
3,866,596	+	nikC	JDDGAC_20170	0.27	-0.4
3,866,757	+	nikC	JDDGAC_20170	0.47	-0.2
3,866,758	-	nikC	JDDGAC_20170	0.47	+0.9
3,866,758	-	nikC	JDDGAC_20170	0.47	-0.1
3,866,792	+	nikC	JDDGAC_20170	0.51	+0.1
3,866,861	-	nikC	JDDGAC_20170	0.59	-1.3
3,866,861	-	nikC	JDDGAC_20170	0.59	-0.5
3,866,884	+	nikC	JDDGAC_20170	0.62	+0.1
3,866,885	-	nikC	JDDGAC_20170	0.62	-0.0
3,867,017	-	nikC	JDDGAC_20170	0.78	-1.4
3,867,102	+	nikC	JDDGAC_20170	0.88	-0.5
3,867,271	-				-0.0