Strain Fitness in Escherichia coli ECRC98 around JDDGAC_08665

Experiment: K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_08660 and JDDGAC_08665 are separated by 447 nucleotidesJDDGAC_08665 and ybbA are separated by 547 nucleotides JDDGAC_08660: JDDGAC_08660 - DUF968 domain-containing protein, at 1,517,800 to 1,518,849 _08660 JDDGAC_08665: JDDGAC_08665 - Hok/gef family, at 1,519,297 to 1,519,509 _08665 JDDGAC_08675: ybbA - iroE, at 1,520,057 to 1,520,830 ybbA Position (kb) 1519 1520Strain fitness (log2 ratio) -2 -1 0 1at 1518.529 kb on + strand, within JDDGAC_08660at 1518.530 kb on - strand, within JDDGAC_08660at 1518.530 kb on - strand, within JDDGAC_08660at 1518.551 kb on + strand, within JDDGAC_08660at 1519.481 kb on + strand, within JDDGAC_08665at 1519.481 kb on + strand, within JDDGAC_08665at 1519.527 kb on - strandat 1519.533 kb on - strandat 1519.726 kb on + strandat 1519.726 kb on + strandat 1519.726 kb on + strandat 1519.727 kb on - strandat 1519.727 kb on - strandat 1519.808 kb on + strandat 1519.825 kb on + strandat 1519.842 kb on - strandat 1519.846 kb on - strandat 1519.943 kb on - strandat 1519.943 kb on - strandat 1520.021 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K30
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1,518,529 + JDDGAC_08660 0.69 -0.3
1,518,530 - JDDGAC_08660 0.70 +0.5
1,518,530 - JDDGAC_08660 0.70 -0.5
1,518,551 + JDDGAC_08660 0.72 -0.3
1,519,481 + JDDGAC_08665 0.86 -0.4
1,519,481 + JDDGAC_08665 0.86 -2.3
1,519,527 - +0.1
1,519,533 - +0.1
1,519,726 + +0.8
1,519,726 + -0.3
1,519,726 + -2.3
1,519,727 - +0.8
1,519,727 - +0.7
1,519,808 + -0.9
1,519,825 + -1.8
1,519,842 - -0.8
1,519,846 - +0.6
1,519,943 - +0.2
1,519,943 - -0.1
1,520,021 - -0.4

Or see this region's nucleotide sequence