Strain Fitness in Escherichia coli ECRC98 around JDDGAC_08575

Experiment: K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_08565 and JDDGAC_08570 are separated by 255 nucleotidesJDDGAC_08570 and JDDGAC_08575 are separated by 159 nucleotidesJDDGAC_08575 and JDDGAC_08580 are separated by 220 nucleotidesJDDGAC_08580 and JDDGAC_08585 are separated by 1 nucleotides JDDGAC_08565: JDDGAC_08565 - holin, at 1,507,530 to 1,507,736 _08565 JDDGAC_08570: JDDGAC_08570 - hypothetical protein, at 1,507,992 to 1,508,264 _08570 JDDGAC_08575: JDDGAC_08575 - lysozyme, at 1,508,424 to 1,508,957 _08575 JDDGAC_08580: JDDGAC_08580 - hypothetical protein, at 1,509,178 to 1,509,291 _08580 JDDGAC_08585: JDDGAC_08585 - lysis protein, at 1,509,293 to 1,509,760 _08585 Position (kb) 1508 1509Strain fitness (log2 ratio) -2 -1 0 1 2at 1507.888 kb on - strandat 1507.988 kb on - strandat 1508.010 kb on + strandat 1508.013 kb on + strandat 1508.014 kb on - strandat 1508.077 kb on - strand, within JDDGAC_08570at 1508.077 kb on - strand, within JDDGAC_08570at 1508.102 kb on + strand, within JDDGAC_08570at 1508.103 kb on - strand, within JDDGAC_08570at 1508.106 kb on - strand, within JDDGAC_08570at 1508.150 kb on + strand, within JDDGAC_08570at 1508.216 kb on + strand, within JDDGAC_08570at 1508.219 kb on + strand, within JDDGAC_08570at 1508.238 kb on + strandat 1508.265 kb on + strandat 1508.266 kb on - strandat 1508.308 kb on + strandat 1508.308 kb on + strandat 1508.327 kb on + strandat 1508.349 kb on + strandat 1508.384 kb on - strandat 1508.385 kb on + strandat 1508.386 kb on - strandat 1508.390 kb on - strandat 1508.395 kb on - strandat 1508.604 kb on - strand, within JDDGAC_08575at 1509.751 kb on + strandat 1509.751 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K30
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1,507,888 - -2.0
1,507,988 - +1.8
1,508,010 + +0.4
1,508,013 + -0.1
1,508,014 - -0.3
1,508,077 - JDDGAC_08570 0.31 +1.0
1,508,077 - JDDGAC_08570 0.31 -0.3
1,508,102 + JDDGAC_08570 0.40 +0.0
1,508,103 - JDDGAC_08570 0.41 +0.8
1,508,106 - JDDGAC_08570 0.42 -1.3
1,508,150 + JDDGAC_08570 0.58 +1.0
1,508,216 + JDDGAC_08570 0.82 +0.5
1,508,219 + JDDGAC_08570 0.83 -0.4
1,508,238 + +0.2
1,508,265 + -1.0
1,508,266 - +0.7
1,508,308 + -0.3
1,508,308 + +0.0
1,508,327 + +0.8
1,508,349 + +0.9
1,508,384 - -0.9
1,508,385 + +1.1
1,508,386 - -0.9
1,508,390 - -0.9
1,508,395 - +1.8
1,508,604 - JDDGAC_08575 0.34 -1.1
1,509,751 + -0.4
1,509,751 + +1.1

Or see this region's nucleotide sequence