Experiment: K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_08565 and JDDGAC_08570 are separated by 255 nucleotides JDDGAC_08570 and JDDGAC_08575 are separated by 159 nucleotides JDDGAC_08575 and JDDGAC_08580 are separated by 220 nucleotides JDDGAC_08580 and JDDGAC_08585 are separated by 1 nucleotides
JDDGAC_08565: JDDGAC_08565 - holin, at 1,507,530 to 1,507,736
_08565
JDDGAC_08570: JDDGAC_08570 - hypothetical protein, at 1,507,992 to 1,508,264
_08570
JDDGAC_08575: JDDGAC_08575 - lysozyme, at 1,508,424 to 1,508,957
_08575
JDDGAC_08580: JDDGAC_08580 - hypothetical protein, at 1,509,178 to 1,509,291
_08580
JDDGAC_08585: JDDGAC_08585 - lysis protein, at 1,509,293 to 1,509,760
_08585
Position (kb)
1508
1509 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1507.888 kb on - strand at 1507.988 kb on - strand at 1508.010 kb on + strand at 1508.013 kb on + strand at 1508.014 kb on - strand at 1508.077 kb on - strand, within JDDGAC_08570 at 1508.077 kb on - strand, within JDDGAC_08570 at 1508.102 kb on + strand, within JDDGAC_08570 at 1508.103 kb on - strand, within JDDGAC_08570 at 1508.106 kb on - strand, within JDDGAC_08570 at 1508.150 kb on + strand, within JDDGAC_08570 at 1508.216 kb on + strand, within JDDGAC_08570 at 1508.219 kb on + strand, within JDDGAC_08570 at 1508.238 kb on + strand at 1508.265 kb on + strand at 1508.266 kb on - strand at 1508.308 kb on + strand at 1508.308 kb on + strand at 1508.327 kb on + strand at 1508.349 kb on + strand at 1508.384 kb on - strand at 1508.385 kb on + strand at 1508.386 kb on - strand at 1508.390 kb on - strand at 1508.395 kb on - strand at 1508.604 kb on - strand, within JDDGAC_08575 at 1509.751 kb on + strand at 1509.751 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction K30 remove 1,507,888 - -2.0 1,507,988 - +1.8 1,508,010 + +0.4 1,508,013 + -0.1 1,508,014 - -0.3 1,508,077 - JDDGAC_08570 0.31 +1.0 1,508,077 - JDDGAC_08570 0.31 -0.3 1,508,102 + JDDGAC_08570 0.40 +0.0 1,508,103 - JDDGAC_08570 0.41 +0.8 1,508,106 - JDDGAC_08570 0.42 -1.3 1,508,150 + JDDGAC_08570 0.58 +1.0 1,508,216 + JDDGAC_08570 0.82 +0.5 1,508,219 + JDDGAC_08570 0.83 -0.4 1,508,238 + +0.2 1,508,265 + -1.0 1,508,266 - +0.7 1,508,308 + -0.3 1,508,308 + +0.0 1,508,327 + +0.8 1,508,349 + +0.9 1,508,384 - -0.9 1,508,385 + +1.1 1,508,386 - -0.9 1,508,390 - -0.9 1,508,395 - +1.8 1,508,604 - JDDGAC_08575 0.34 -1.1 1,509,751 + -0.4 1,509,751 + +1.1
Or see this region's nucleotide sequence