Strain Fitness in Escherichia coli ECRC98 around JDDGAC_06975

Experiment: K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_06970 and rusA overlap by 4 nucleotidesrusA and JDDGAC_06980 are separated by 12 nucleotides JDDGAC_06970: JDDGAC_06970 - antitermination protein, at 1,210,887 to 1,211,708 _06970 JDDGAC_06975: rusA - Endodeoxyribonuclease RusA, at 1,211,705 to 1,212,079 rusA JDDGAC_06980: JDDGAC_06980 - DUF968 domain-containing protein, at 1,212,092 to 1,213,141 _06980 Position (kb) 1211 1212 1213Strain fitness (log2 ratio) -2 -1 0 1 2at 1210.762 kb on + strandat 1210.889 kb on - strandat 1210.889 kb on - strandat 1210.971 kb on - strand, within JDDGAC_06970at 1210.999 kb on - strand, within JDDGAC_06970at 1211.015 kb on + strand, within JDDGAC_06970at 1211.016 kb on - strand, within JDDGAC_06970at 1211.016 kb on - strand, within JDDGAC_06970at 1211.016 kb on - strand, within JDDGAC_06970at 1211.016 kb on - strand, within JDDGAC_06970at 1211.028 kb on - strand, within JDDGAC_06970at 1211.047 kb on - strand, within JDDGAC_06970at 1211.047 kb on - strand, within JDDGAC_06970at 1211.100 kb on - strand, within JDDGAC_06970at 1211.252 kb on - strand, within JDDGAC_06970at 1211.300 kb on - strand, within JDDGAC_06970at 1211.390 kb on - strand, within JDDGAC_06970at 1211.405 kb on - strand, within JDDGAC_06970at 1211.414 kb on + strand, within JDDGAC_06970at 1211.418 kb on - strand, within JDDGAC_06970at 1211.492 kb on - strand, within JDDGAC_06970at 1211.534 kb on + strand, within JDDGAC_06970at 1211.535 kb on - strand, within JDDGAC_06970at 1211.535 kb on - strand, within JDDGAC_06970at 1211.619 kb on - strand, within JDDGAC_06970at 1211.627 kb on + strandat 1211.627 kb on + strandat 1211.628 kb on - strandat 1211.768 kb on + strand, within rusA

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Per-strain Table

Position Strand Gene LocusTag Fraction K30
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1,210,762 + -0.2
1,210,889 - -0.2
1,210,889 - +0.7
1,210,971 - JDDGAC_06970 0.10 -1.4
1,210,999 - JDDGAC_06970 0.14 +0.5
1,211,015 + JDDGAC_06970 0.16 +0.9
1,211,016 - JDDGAC_06970 0.16 +1.1
1,211,016 - JDDGAC_06970 0.16 -0.2
1,211,016 - JDDGAC_06970 0.16 +1.2
1,211,016 - JDDGAC_06970 0.16 +0.9
1,211,028 - JDDGAC_06970 0.17 +0.8
1,211,047 - JDDGAC_06970 0.19 +0.9
1,211,047 - JDDGAC_06970 0.19 -0.1
1,211,100 - JDDGAC_06970 0.26 -0.1
1,211,252 - JDDGAC_06970 0.44 -0.9
1,211,300 - JDDGAC_06970 0.50 +2.5
1,211,390 - JDDGAC_06970 0.61 -1.4
1,211,405 - JDDGAC_06970 0.63 -0.1
1,211,414 + JDDGAC_06970 0.64 -0.4
1,211,418 - JDDGAC_06970 0.65 +0.8
1,211,492 - JDDGAC_06970 0.74 +0.5
1,211,534 + JDDGAC_06970 0.79 -0.3
1,211,535 - JDDGAC_06970 0.79 -1.1
1,211,535 - JDDGAC_06970 0.79 -0.2
1,211,619 - JDDGAC_06970 0.89 -0.0
1,211,627 + -1.1
1,211,627 + -1.2
1,211,628 - -2.0
1,211,768 + rusA JDDGAC_06975 0.17 -0.8

Or see this region's nucleotide sequence