Experiment: K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_06970 and rusA overlap by 4 nucleotides rusA and JDDGAC_06980 are separated by 12 nucleotides
JDDGAC_06970: JDDGAC_06970 - antitermination protein, at 1,210,887 to 1,211,708
_06970
JDDGAC_06975: rusA - Endodeoxyribonuclease RusA, at 1,211,705 to 1,212,079
rusA
JDDGAC_06980: JDDGAC_06980 - DUF968 domain-containing protein, at 1,212,092 to 1,213,141
_06980
Position (kb)
1211
1212
1213 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1210.762 kb on + strand at 1210.889 kb on - strand at 1210.889 kb on - strand at 1210.971 kb on - strand, within JDDGAC_06970 at 1210.999 kb on - strand, within JDDGAC_06970 at 1211.015 kb on + strand, within JDDGAC_06970 at 1211.016 kb on - strand, within JDDGAC_06970 at 1211.016 kb on - strand, within JDDGAC_06970 at 1211.016 kb on - strand, within JDDGAC_06970 at 1211.016 kb on - strand, within JDDGAC_06970 at 1211.028 kb on - strand, within JDDGAC_06970 at 1211.047 kb on - strand, within JDDGAC_06970 at 1211.047 kb on - strand, within JDDGAC_06970 at 1211.100 kb on - strand, within JDDGAC_06970 at 1211.252 kb on - strand, within JDDGAC_06970 at 1211.300 kb on - strand, within JDDGAC_06970 at 1211.390 kb on - strand, within JDDGAC_06970 at 1211.405 kb on - strand, within JDDGAC_06970 at 1211.414 kb on + strand, within JDDGAC_06970 at 1211.418 kb on - strand, within JDDGAC_06970 at 1211.492 kb on - strand, within JDDGAC_06970 at 1211.534 kb on + strand, within JDDGAC_06970 at 1211.535 kb on - strand, within JDDGAC_06970 at 1211.535 kb on - strand, within JDDGAC_06970 at 1211.619 kb on - strand, within JDDGAC_06970 at 1211.627 kb on + strand at 1211.627 kb on + strand at 1211.628 kb on - strand at 1211.768 kb on + strand, within rusA
Per-strain Table
Position Strand Gene LocusTag Fraction K30 remove 1,210,762 + -0.2 1,210,889 - -0.2 1,210,889 - +0.7 1,210,971 - JDDGAC_06970 0.10 -1.4 1,210,999 - JDDGAC_06970 0.14 +0.5 1,211,015 + JDDGAC_06970 0.16 +0.9 1,211,016 - JDDGAC_06970 0.16 +1.1 1,211,016 - JDDGAC_06970 0.16 -0.2 1,211,016 - JDDGAC_06970 0.16 +1.2 1,211,016 - JDDGAC_06970 0.16 +0.9 1,211,028 - JDDGAC_06970 0.17 +0.8 1,211,047 - JDDGAC_06970 0.19 +0.9 1,211,047 - JDDGAC_06970 0.19 -0.1 1,211,100 - JDDGAC_06970 0.26 -0.1 1,211,252 - JDDGAC_06970 0.44 -0.9 1,211,300 - JDDGAC_06970 0.50 +2.5 1,211,390 - JDDGAC_06970 0.61 -1.4 1,211,405 - JDDGAC_06970 0.63 -0.1 1,211,414 + JDDGAC_06970 0.64 -0.4 1,211,418 - JDDGAC_06970 0.65 +0.8 1,211,492 - JDDGAC_06970 0.74 +0.5 1,211,534 + JDDGAC_06970 0.79 -0.3 1,211,535 - JDDGAC_06970 0.79 -1.1 1,211,535 - JDDGAC_06970 0.79 -0.2 1,211,619 - JDDGAC_06970 0.89 -0.0 1,211,627 + -1.1 1,211,627 + -1.2 1,211,628 - -2.0 1,211,768 + rusA JDDGAC_06975 0.17 -0.8
Or see this region's nucleotide sequence