Strain Fitness in Escherichia coli ECRC98 around JDDGAC_01750

Experiment: K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydiR and ydiQ are separated by 19 nucleotidesydiQ and JDDGAC_01750 are separated by 36 nucleotidesJDDGAC_01750 and ydiP are separated by 102 nucleotides JDDGAC_01740: ydiR - electron transfer flavoprotein subunit alpha, at 308,187 to 309,125 ydiR JDDGAC_01745: ydiQ - electron transfer flavoprotein, at 309,145 to 309,909 ydiQ JDDGAC_01750: JDDGAC_01750 - hypothetical protein, at 309,946 to 310,122 _01750 JDDGAC_01755: ydiP - Uncharacterized HTH-type transcriptional regulator YdiP, at 310,225 to 311,136 ydiP Position (kb) 309 310 311Strain fitness (log2 ratio) -1 0 1 2at 308.973 kb on - strand, within ydiRat 308.987 kb on - strand, within ydiRat 309.032 kb on - strandat 309.032 kb on - strandat 309.077 kb on - strandat 309.114 kb on + strandat 309.222 kb on + strand, within ydiQat 309.223 kb on - strand, within ydiQat 309.223 kb on - strand, within ydiQat 309.543 kb on - strand, within ydiQat 309.543 kb on - strand, within ydiQat 309.665 kb on + strand, within ydiQat 309.665 kb on + strand, within ydiQat 309.665 kb on + strand, within ydiQat 310.081 kb on - strand, within JDDGAC_01750at 310.084 kb on + strand, within JDDGAC_01750at 310.085 kb on - strand, within JDDGAC_01750at 310.186 kb on + strandat 310.411 kb on + strand, within ydiPat 310.432 kb on - strand, within ydiPat 310.902 kb on + strand, within ydiPat 310.906 kb on + strand, within ydiPat 310.923 kb on + strand, within ydiP

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Per-strain Table

Position Strand Gene LocusTag Fraction K30
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308,973 - ydiR JDDGAC_01740 0.84 -1.0
308,987 - ydiR JDDGAC_01740 0.85 +0.2
309,032 - +1.2
309,032 - +0.2
309,077 - -0.7
309,114 + +2.6
309,222 + ydiQ JDDGAC_01745 0.10 +0.4
309,223 - ydiQ JDDGAC_01745 0.10 -1.6
309,223 - ydiQ JDDGAC_01745 0.10 +0.2
309,543 - ydiQ JDDGAC_01745 0.52 -1.1
309,543 - ydiQ JDDGAC_01745 0.52 -0.1
309,665 + ydiQ JDDGAC_01745 0.68 -0.5
309,665 + ydiQ JDDGAC_01745 0.68 -0.4
309,665 + ydiQ JDDGAC_01745 0.68 +0.2
310,081 - JDDGAC_01750 0.76 -0.5
310,084 + JDDGAC_01750 0.78 -1.3
310,085 - JDDGAC_01750 0.79 -0.2
310,186 + +1.4
310,411 + ydiP JDDGAC_01755 0.20 -0.0
310,432 - ydiP JDDGAC_01755 0.23 +0.3
310,902 + ydiP JDDGAC_01755 0.74 +2.0
310,906 + ydiP JDDGAC_01755 0.75 +1.0
310,923 + ydiP JDDGAC_01755 0.77 +2.3

Or see this region's nucleotide sequence