Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15335

Experiment: defined media with 20AA_mix

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	defined media with 20AA_mix
3,347,582	+		LRK53_RS15330	0.54	-2.6
3,347,582	+		LRK53_RS15330	0.54	+1.1
3,347,583	-		LRK53_RS15330	0.54	+0.1
3,347,583	-		LRK53_RS15330	0.54	-1.0
3,347,893	+		LRK53_RS15330	0.72	-0.7
3,347,893	+		LRK53_RS15330	0.72	-0.9
3,347,893	+		LRK53_RS15330	0.72	+0.4
3,347,893	+		LRK53_RS15330	0.72	-0.5
3,347,893	+		LRK53_RS15330	0.72	+1.1
3,347,893	+		LRK53_RS15330	0.72	+0.3
3,347,893	+		LRK53_RS15330	0.72	+0.4
3,347,893	+		LRK53_RS15330	0.72	-1.1
3,347,894	-		LRK53_RS15330	0.72	+0.5
3,347,894	-		LRK53_RS15330	0.72	-1.0
3,347,894	-		LRK53_RS15330	0.72	+1.1
3,347,894	-		LRK53_RS15330	0.72	-0.9
3,347,894	-		LRK53_RS15330	0.72	-1.6
3,347,894	-		LRK53_RS15330	0.72	+0.1
3,347,894	-		LRK53_RS15330	0.72	+2.1
3,347,894	-		LRK53_RS15330	0.72	-0.3
3,347,897	+		LRK53_RS15330	0.72	-0.6
3,347,897	+		LRK53_RS15330	0.72	+0.1
3,347,897	+		LRK53_RS15330	0.72	-1.5
3,347,897	+		LRK53_RS15330	0.72	-1.3
3,347,897	+		LRK53_RS15330	0.72	-2.1
3,347,897	+		LRK53_RS15330	0.72	-1.7
3,347,897	+		LRK53_RS15330	0.72	-2.1
3,347,898	-		LRK53_RS15330	0.72	-1.9
3,347,898	-		LRK53_RS15330	0.72	+0.3
3,347,898	-		LRK53_RS15330	0.72	+0.1
3,347,898	-		LRK53_RS15330	0.72	-0.5
3,347,898	-		LRK53_RS15330	0.72	-2.4
3,347,898	-		LRK53_RS15330	0.72	-0.4
3,347,898	-		LRK53_RS15330	0.72	+2.1
3,347,898	-		LRK53_RS15330	0.72	-0.4
3,347,898	-		LRK53_RS15330	0.72	-0.7
3,347,898	-		LRK53_RS15330	0.72	-0.5
3,347,898	-		LRK53_RS15330	0.72	+0.3
3,347,898	-		LRK53_RS15330	0.72	-0.9
3,347,898	-		LRK53_RS15330	0.72	-0.5
3,347,898	-		LRK53_RS15330	0.72	-1.9
3,347,898	-		LRK53_RS15330	0.72	-1.1
3,347,961	+		LRK53_RS15330	0.76	+0.5
3,347,961	+		LRK53_RS15330	0.76	-2.0
3,347,961	+		LRK53_RS15330	0.76	-1.8
3,347,961	+		LRK53_RS15330	0.76	+0.3
3,347,961	+		LRK53_RS15330	0.76	-1.3
3,347,961	+		LRK53_RS15330	0.76	-0.9
3,347,961	+		LRK53_RS15330	0.76	+0.6
3,347,961	+		LRK53_RS15330	0.76	-0.8
3,347,961	+		LRK53_RS15330	0.76	+0.3
3,347,961	+		LRK53_RS15330	0.76	-0.5
3,347,961	+		LRK53_RS15330	0.76	+0.1
3,347,961	+		LRK53_RS15330	0.76	+0.1
3,347,961	+		LRK53_RS15330	0.76	+1.1
3,347,961	+		LRK53_RS15330	0.76	-0.3
3,347,962	-		LRK53_RS15330	0.76	-0.4
3,347,962	-		LRK53_RS15330	0.76	+0.5
3,347,962	-		LRK53_RS15330	0.76	-0.7
3,347,962	-		LRK53_RS15330	0.76	+0.1
3,347,962	-		LRK53_RS15330	0.76	-1.7
3,347,962	-		LRK53_RS15330	0.76	-1.2
3,347,962	-		LRK53_RS15330	0.76	+0.1
3,347,962	-		LRK53_RS15330	0.76	-1.5
3,347,962	-		LRK53_RS15330	0.76	-1.5
3,347,962	-		LRK53_RS15330	0.76	-0.5
3,347,962	-		LRK53_RS15330	0.76	+0.5
3,347,962	-		LRK53_RS15330	0.76	-0.9
3,347,962	-		LRK53_RS15330	0.76	+0.5
3,347,962	-		LRK53_RS15330	0.76	+0.7
3,347,962	-		LRK53_RS15330	0.76	+1.1
3,347,962	-		LRK53_RS15330	0.76	-0.9
3,347,962	-		LRK53_RS15330	0.76	+0.8
3,347,993	+		LRK53_RS15330	0.78	-1.5
3,347,993	+		LRK53_RS15330	0.78	+0.8
3,347,993	+		LRK53_RS15330	0.78	+0.5
3,347,993	+		LRK53_RS15330	0.78	+1.5
3,347,993	+		LRK53_RS15330	0.78	-0.7
3,347,993	+		LRK53_RS15330	0.78	-2.5
3,347,993	+		LRK53_RS15330	0.78	-1.6
3,347,993	+		LRK53_RS15330	0.78	+2.1
3,347,994	-		LRK53_RS15330	0.78	-0.3
3,347,994	-		LRK53_RS15330	0.78	-0.3
3,347,994	-		LRK53_RS15330	0.78	+0.1
3,347,994	-		LRK53_RS15330	0.78	+0.7
3,347,994	-		LRK53_RS15330	0.78	-1.9
3,347,994	-		LRK53_RS15330	0.78	-0.5
3,348,001	+		LRK53_RS15330	0.78	-1.3
3,348,352	+				-0.3
3,348,352	+				-0.7
3,348,352	+				+0.1
3,348,353	-				-0.2
3,348,446	-				-0.5
3,348,460	+				-0.1
3,348,461	-				+0.1
3,348,523	-				-1.4
3,348,523	-				-0.5
3,348,523	-				+0.2
3,348,719	+		LRK53_RS15335	0.20	-2.8
3,348,719	+		LRK53_RS15335	0.20	-1.1
3,348,720	-		LRK53_RS15335	0.20	-0.5
3,348,720	-		LRK53_RS15335	0.20	-0.3
3,348,720	-		LRK53_RS15335	0.20	-1.9
3,348,720	-		LRK53_RS15335	0.20	-0.9
3,348,786	+		LRK53_RS15335	0.28	-1.8
3,348,786	+		LRK53_RS15335	0.28	-0.8
3,348,786	+		LRK53_RS15335	0.28	-0.9
3,348,786	+		LRK53_RS15335	0.28	+0.1
3,348,787	-		LRK53_RS15335	0.28	+0.6
3,348,787	-		LRK53_RS15335	0.28	-1.9
3,348,830	+		LRK53_RS15335	0.33	+0.1
3,348,838	+		LRK53_RS15335	0.34	-0.5
3,348,838	+		LRK53_RS15335	0.34	-1.3
3,348,839	-		LRK53_RS15335	0.34	-2.3
3,348,839	-		LRK53_RS15335	0.34	-0.9
3,348,839	-		LRK53_RS15335	0.34	-1.5
3,348,840	+		LRK53_RS15335	0.34	+0.1
3,348,840	+		LRK53_RS15335	0.34	-0.1
3,348,841	-		LRK53_RS15335	0.34	-0.5
3,348,841	-		LRK53_RS15335	0.34	-1.4
3,348,841	-		LRK53_RS15335	0.34	-1.2
3,348,850	-		LRK53_RS15335	0.35	+1.1
3,348,861	+		LRK53_RS15335	0.36	-0.3
3,348,861	+		LRK53_RS15335	0.36	-1.1
3,348,861	+		LRK53_RS15335	0.36	-0.3
3,348,861	+		LRK53_RS15335	0.36	+1.1
3,348,861	+		LRK53_RS15335	0.36	-1.8
3,348,861	+		LRK53_RS15335	0.36	-1.0
3,348,889	-		LRK53_RS15335	0.40	-1.9
3,348,927	+		LRK53_RS15335	0.44	+0.5
3,348,935	-		LRK53_RS15335	0.45	+0.1
3,348,959	-		LRK53_RS15335	0.48	-1.2
3,348,998	+		LRK53_RS15335	0.52	-1.2
3,348,998	+		LRK53_RS15335	0.52	+0.1
3,348,999	-		LRK53_RS15335	0.52	+1.5
3,349,001	+		LRK53_RS15335	0.53	-0.9
3,349,002	-		LRK53_RS15335	0.53	-1.3
3,349,105	+		LRK53_RS15335	0.65	-1.7
3,349,105	+		LRK53_RS15335	0.65	-3.3
3,349,106	-		LRK53_RS15335	0.65	+0.1
3,349,128	+		LRK53_RS15335	0.67	-3.2
3,349,128	+		LRK53_RS15335	0.67	-1.8
3,349,129	-		LRK53_RS15335	0.67	-1.7
3,349,195	+		LRK53_RS15335	0.75	-0.9
3,349,195	+		LRK53_RS15335	0.75	+1.6
3,349,195	+		LRK53_RS15335	0.75	+1.6
3,349,196	-		LRK53_RS15335	0.75	+0.5
3,349,196	-		LRK53_RS15335	0.75	-0.9
3,349,197	+		LRK53_RS15335	0.75	-1.3
3,349,256	+		LRK53_RS15335	0.82	-1.4
3,349,302	+		LRK53_RS15335	0.87	-2.1
3,349,302	+		LRK53_RS15335	0.87	-1.3
3,349,303	-		LRK53_RS15335	0.88	-0.9
3,349,303	-		LRK53_RS15335	0.88	+0.7
3,349,310	+		LRK53_RS15335	0.88	-1.4
3,349,311	-		LRK53_RS15335	0.88	-0.2
3,349,311	-		LRK53_RS15335	0.88	-2.7
3,349,311	-		LRK53_RS15335	0.88	-1.4
3,349,311	-		LRK53_RS15335	0.88	-2.4
3,349,311	-		LRK53_RS15335	0.88	+1.1
3,349,406	-				+0.6
3,349,419	+				-1.3
3,349,419	+				-0.8
3,349,420	-				+0.1
3,349,420	-				+1.1
3,349,437	+				-0.5
3,349,438	-				-1.3
3,349,451	-				-1.3
3,349,472	+				-1.5
3,349,472	+				+0.9
3,349,472	+				+1.1
3,349,473	-				-0.4
3,349,473	-				-1.5
3,349,473	-				+0.3
3,349,473	-				-1.5
3,349,476	-				+0.1
3,349,580	+				+0.1
3,349,580	+				-1.3
3,349,580	+				-0.5
3,349,581	-				-2.3
3,349,581	-				+0.1
3,349,581	-				-0.9
3,349,581	-				-1.4
3,349,581	-				-0.5
3,349,581	-				-2.3
3,349,611	-				-3.2
3,349,622	+		LRK53_RS15340	0.11	-1.4
3,349,622	+		LRK53_RS15340	0.11	-1.1
3,349,622	+		LRK53_RS15340	0.11	+1.1
3,349,623	-		LRK53_RS15340	0.11	-2.1
3,349,623	-		LRK53_RS15340	0.11	-0.1
3,349,623	-		LRK53_RS15340	0.11	-1.7
3,349,623	-		LRK53_RS15340	0.11	-1.4
3,349,638	-		LRK53_RS15340	0.13	-0.2
3,349,638	-		LRK53_RS15340	0.13	+0.1
3,349,638	-		LRK53_RS15340	0.13	-0.1
3,349,638	-		LRK53_RS15340	0.13	+1.1
3,349,676	+		LRK53_RS15340	0.16	-1.1
3,349,676	+		LRK53_RS15340	0.16	+0.1
3,349,676	+		LRK53_RS15340	0.16	-0.3
3,349,676	+		LRK53_RS15340	0.16	+0.1
3,349,683	-		LRK53_RS15340	0.17	-0.9
3,349,790	+		LRK53_RS15340	0.28	-0.5
3,349,790	+		LRK53_RS15340	0.28	-1.7
3,349,790	+		LRK53_RS15340	0.28	+1.1
3,349,790	+		LRK53_RS15340	0.28	-0.3
3,349,791	-		LRK53_RS15340	0.28	-0.9
3,349,791	-		LRK53_RS15340	0.28	+0.1
3,349,791	-		LRK53_RS15340	0.28	-0.5
3,349,791	-		LRK53_RS15340	0.28	-2.5
3,349,791	-		LRK53_RS15340	0.28	-1.5
3,349,791	-		LRK53_RS15340	0.28	-0.3
3,349,791	-		LRK53_RS15340	0.28	+1.1
3,349,791	-		LRK53_RS15340	0.28	-0.9
3,349,791	-		LRK53_RS15340	0.28	+1.1
3,349,791	-		LRK53_RS15340	0.28	-0.9
3,349,791	-		LRK53_RS15340	0.28	-0.5
3,349,791	-		LRK53_RS15340	0.28	-2.1
3,349,791	-		LRK53_RS15340	0.28	-1.3
3,349,791	-		LRK53_RS15340	0.28	+1.1
3,349,791	-		LRK53_RS15340	0.28	-0.9
3,349,791	-		LRK53_RS15340	0.28	-0.3
3,349,791	-		LRK53_RS15340	0.28	-0.3
3,349,791	-		LRK53_RS15340	0.28	-1.9
3,349,791	-		LRK53_RS15340	0.28	-0.8
3,349,791	-		LRK53_RS15340	0.28	+1.1
3,349,835	+		LRK53_RS15340	0.33	-1.1
3,349,835	+		LRK53_RS15340	0.33	+0.1
3,349,835	+		LRK53_RS15340	0.33	-0.5
3,349,836	-		LRK53_RS15340	0.33	+0.1
3,349,836	-		LRK53_RS15340	0.33	-0.2
3,349,836	-		LRK53_RS15340	0.33	-0.4
3,349,850	+		LRK53_RS15340	0.34	+0.1
3,349,850	+		LRK53_RS15340	0.34	-0.1
3,349,850	+		LRK53_RS15340	0.34	-0.3
3,349,850	+		LRK53_RS15340	0.34	-1.2
3,349,850	+		LRK53_RS15340	0.34	-0.5
3,349,850	+		LRK53_RS15340	0.34	+0.5
3,349,850	+		LRK53_RS15340	0.34	+0.1
3,349,850	+		LRK53_RS15340	0.34	-0.5
3,349,850	+		LRK53_RS15340	0.34	-1.3
3,349,850	+		LRK53_RS15340	0.34	+1.6
3,349,850	+		LRK53_RS15340	0.34	-2.5
3,349,850	+		LRK53_RS15340	0.34	-0.7
3,349,850	+		LRK53_RS15340	0.34	-1.1
3,349,851	-		LRK53_RS15340	0.34	-1.3
3,349,851	-		LRK53_RS15340	0.34	-0.5
3,349,851	-		LRK53_RS15340	0.34	+0.6
3,349,851	-		LRK53_RS15340	0.34	-1.0
3,349,851	-		LRK53_RS15340	0.34	-1.6
3,349,851	-		LRK53_RS15340	0.34	-0.5
3,349,851	-		LRK53_RS15340	0.34	-0.9
3,349,851	-		LRK53_RS15340	0.34	+1.1
3,349,851	-		LRK53_RS15340	0.34	-1.1
3,349,851	-		LRK53_RS15340	0.34	-1.7
3,349,851	-		LRK53_RS15340	0.34	-0.9
3,349,851	-		LRK53_RS15340	0.34	-0.5
3,349,985	+		LRK53_RS15340	0.48	+0.6
3,349,985	+		LRK53_RS15340	0.48	+0.1
3,349,985	+		LRK53_RS15340	0.48	-1.3
3,349,985	+		LRK53_RS15340	0.48	-1.7
3,349,985	+		LRK53_RS15340	0.48	+0.3
3,349,985	+		LRK53_RS15340	0.48	-0.7
3,349,985	+		LRK53_RS15340	0.48	-2.6
3,349,985	+		LRK53_RS15340	0.48	-0.3
3,349,985	+		LRK53_RS15340	0.48	+1.1
3,349,985	+		LRK53_RS15340	0.48	-1.1
3,349,986	-		LRK53_RS15340	0.48	-1.2
3,349,986	-		LRK53_RS15340	0.48	-1.3
3,349,986	-		LRK53_RS15340	0.48	-1.7
3,349,986	-		LRK53_RS15340	0.48	-1.1
3,349,986	-		LRK53_RS15340	0.48	-0.9
3,349,986	-		LRK53_RS15340	0.48	-0.5
3,349,986	-		LRK53_RS15340	0.48	+0.1
3,349,986	-		LRK53_RS15340	0.48	-0.8
3,349,986	-		LRK53_RS15340	0.48	-0.5
3,349,986	-		LRK53_RS15340	0.48	-0.7
3,349,986	-		LRK53_RS15340	0.48	-0.5
3,350,000	+		LRK53_RS15340	0.50	-0.7
3,350,000	+		LRK53_RS15340	0.50	+0.5
3,350,000	+		LRK53_RS15340	0.50	-1.5
3,350,000	+		LRK53_RS15340	0.50	-1.9
3,350,000	+		LRK53_RS15340	0.50	+1.1
3,350,198	+		LRK53_RS15340	0.70	+0.1
3,350,198	+		LRK53_RS15340	0.70	-0.8
3,350,198	+		LRK53_RS15340	0.70	-0.3
3,350,198	+		LRK53_RS15340	0.70	-0.9
3,350,199	-		LRK53_RS15340	0.70	-0.5
3,350,270	+		LRK53_RS15340	0.78	+1.1
3,350,270	+		LRK53_RS15340	0.78	-0.5
3,350,270	+		LRK53_RS15340	0.78	+1.1
3,350,270	+		LRK53_RS15340	0.78	-0.3
3,350,271	-		LRK53_RS15340	0.78	-1.3
3,350,271	-		LRK53_RS15340	0.78	-0.7
3,350,271	-		LRK53_RS15340	0.78	-2.5
3,350,271	-		LRK53_RS15340	0.78	-0.9
3,350,271	-		LRK53_RS15340	0.78	-2.2