Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS13675

Experiment: defined media with 20AA_mix

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	defined media with 20AA_mix
3,015,993	+		LRK53_RS13670	0.40	-1.4
3,015,993	+		LRK53_RS13670	0.40	-0.7
3,015,993	+		LRK53_RS13670	0.40	+0.9
3,015,993	+		LRK53_RS13670	0.40	+0.2
3,015,993	+		LRK53_RS13670	0.40	-2.8
3,015,993	+		LRK53_RS13670	0.40	-1.3
3,015,994	-		LRK53_RS13670	0.40	+1.5
3,015,994	-		LRK53_RS13670	0.40	-0.9
3,015,994	-		LRK53_RS13670	0.40	-1.1
3,015,994	-		LRK53_RS13670	0.40	-0.9
3,015,994	-		LRK53_RS13670	0.40	+0.9
3,015,994	-		LRK53_RS13670	0.40	-0.1
3,016,692	+				-1.5
3,016,692	+				-0.1
3,016,692	+				-1.4
3,016,692	+				+0.3
3,016,692	+				-0.5
3,016,692	+				-1.6
3,016,693	-				-0.2
3,016,693	-				+0.4
3,016,693	-				-1.4
3,016,693	-				-1.1
3,016,696	+				-0.6
3,016,696	+				+0.9
3,016,696	+				-1.3
3,016,696	+				-0.6
3,016,696	+				-2.1
3,016,696	+				-1.1
3,016,696	+				-2.0
3,016,696	+				-0.1
3,016,696	+				-1.9
3,016,696	+				-1.7
3,016,696	+				-0.6
3,016,696	+				-0.5
3,016,696	+				+0.9
3,016,696	+				-2.3
3,016,697	-				-0.1
3,016,697	-				-0.7
3,016,697	-				+0.9
3,016,697	-				-0.3
3,016,697	-				-1.3
3,016,697	-				-1.4
3,016,697	-				-0.1
3,016,697	-				-0.7
3,016,697	-				-2.8
3,016,697	-				-1.2
3,016,697	-				-1.1
3,016,697	-				-0.7
3,016,697	-				-2.4
3,016,698	+				-1.1
3,016,698	+				-0.9
3,016,698	+				-0.1
3,016,698	+				-0.5
3,016,698	+				-1.3
3,016,698	+				-0.5
3,016,698	+				+0.5
3,016,698	+				-0.9
3,016,699	-				-1.3
3,016,699	-				+0.1
3,016,699	-				+2.5
3,016,699	-				+0.6
3,016,699	-				-2.1
3,016,699	-				-1.9
3,016,699	-				-0.1
3,016,722	+				+1.9
3,016,810	+				-0.1
3,016,810	+				-1.0
3,016,810	+				-1.5
3,016,810	+				-2.8
3,016,810	+				+0.2
3,016,811	-				-0.5
3,016,821	+				-1.4
3,016,821	+				-1.1
3,016,822	-				-0.1
3,016,867	+				-0.0
3,016,867	+				-0.7
3,016,867	+				-0.7
3,016,867	+				-2.3
3,016,867	+				-0.1
3,016,868	-				-2.2
3,016,868	-				-2.9
3,016,868	-				-0.1
3,016,868	-				-1.1
3,016,868	-				-1.4
3,016,933	+		LRK53_RS13675	0.15	-0.4
3,016,933	+		LRK53_RS13675	0.15	-1.7
3,016,933	+		LRK53_RS13675	0.15	-1.5
3,016,933	+		LRK53_RS13675	0.15	-0.7
3,016,934	-		LRK53_RS13675	0.15	-1.0
3,016,934	-		LRK53_RS13675	0.15	+0.2
3,016,934	-		LRK53_RS13675	0.15	-0.9
3,016,934	-		LRK53_RS13675	0.15	-0.7
3,016,934	-		LRK53_RS13675	0.15	-1.2
3,016,934	-		LRK53_RS13675	0.15	-0.3
3,016,934	-		LRK53_RS13675	0.15	-0.4
3,017,102	+		LRK53_RS13675	0.30	-0.8
3,017,102	+		LRK53_RS13675	0.30	-1.2
3,017,102	+		LRK53_RS13675	0.30	-0.4
3,017,102	+		LRK53_RS13675	0.30	-0.3
3,017,102	+		LRK53_RS13675	0.30	-1.0
3,017,102	+		LRK53_RS13675	0.30	-0.7
3,017,102	+		LRK53_RS13675	0.30	-1.0
3,017,102	+		LRK53_RS13675	0.30	-1.7
3,017,103	-		LRK53_RS13675	0.30	-2.3
3,017,103	-		LRK53_RS13675	0.30	+1.2
3,017,103	-		LRK53_RS13675	0.30	-0.4
3,017,103	-		LRK53_RS13675	0.30	-1.7
3,017,103	-		LRK53_RS13675	0.30	-0.4
3,017,104	+		LRK53_RS13675	0.30	-0.7
3,017,104	+		LRK53_RS13675	0.30	+0.9
3,017,104	+		LRK53_RS13675	0.30	-0.7
3,017,104	+		LRK53_RS13675	0.30	-1.4
3,017,104	+		LRK53_RS13675	0.30	-1.1
3,017,105	-		LRK53_RS13675	0.30	-1.4
3,017,105	-		LRK53_RS13675	0.30	-0.1
3,017,105	-		LRK53_RS13675	0.30	+0.9
3,017,360	+		LRK53_RS13675	0.52	+0.3
3,017,360	+		LRK53_RS13675	0.52	+0.3
3,017,360	+		LRK53_RS13675	0.52	-0.5
3,017,360	+		LRK53_RS13675	0.52	-0.1
3,017,360	+		LRK53_RS13675	0.52	-1.7
3,017,361	-		LRK53_RS13675	0.52	+0.5
3,017,361	-		LRK53_RS13675	0.52	-1.9
3,017,361	-		LRK53_RS13675	0.52	-1.1
3,017,361	-		LRK53_RS13675	0.52	-0.0
3,017,361	-		LRK53_RS13675	0.52	-0.7
3,017,611	+		LRK53_RS13675	0.74	-2.4
3,017,611	+		LRK53_RS13675	0.74	-1.7
3,017,611	+		LRK53_RS13675	0.74	-0.1
3,017,611	+		LRK53_RS13675	0.74	-1.1
3,017,611	+		LRK53_RS13675	0.74	-0.1
3,017,611	+		LRK53_RS13675	0.74	-1.4
3,017,611	+		LRK53_RS13675	0.74	-0.7
3,017,611	+		LRK53_RS13675	0.74	-0.1
3,017,611	+		LRK53_RS13675	0.74	-1.1
3,017,611	+		LRK53_RS13675	0.74	-0.1
3,017,611	+		LRK53_RS13675	0.74	-1.4
3,017,611	+		LRK53_RS13675	0.74	+1.5
3,017,612	-		LRK53_RS13675	0.74	+0.2
3,017,612	-		LRK53_RS13675	0.74	+0.9
3,017,612	-		LRK53_RS13675	0.74	+0.4
3,017,612	-		LRK53_RS13675	0.74	-0.7
3,017,612	-		LRK53_RS13675	0.74	+0.9
3,017,612	-		LRK53_RS13675	0.74	+0.3
3,017,612	-		LRK53_RS13675	0.74	-0.5
3,017,612	-		LRK53_RS13675	0.74	-0.1
3,017,612	-		LRK53_RS13675	0.74	-1.7
3,017,612	-		LRK53_RS13675	0.74	-1.9
3,017,612	-		LRK53_RS13675	0.74	+0.3
3,017,612	-		LRK53_RS13675	0.74	+0.9
3,017,612	-		LRK53_RS13675	0.74	-1.8
3,017,612	-		LRK53_RS13675	0.74	-2.1
3,017,612	-		LRK53_RS13675	0.74	-0.7
3,017,612	-		LRK53_RS13675	0.74	-0.7
3,017,612	-		LRK53_RS13675	0.74	-0.1
3,017,612	-		LRK53_RS13675	0.74	-0.7
3,017,677	+		LRK53_RS13675	0.79	-1.1
3,017,677	+		LRK53_RS13675	0.79	-0.5
3,017,677	+		LRK53_RS13675	0.79	+0.6
3,017,677	+		LRK53_RS13675	0.79	+0.0
3,017,677	+		LRK53_RS13675	0.79	+0.0
3,017,677	+		LRK53_RS13675	0.79	-0.5
3,017,677	+		LRK53_RS13675	0.79	-0.7
3,017,677	+		LRK53_RS13675	0.79	-1.9
3,017,678	-		LRK53_RS13675	0.79	+0.9
3,017,678	-		LRK53_RS13675	0.79	-1.3
3,017,678	-		LRK53_RS13675	0.79	-0.7
3,017,678	-		LRK53_RS13675	0.79	-1.3
3,017,678	-		LRK53_RS13675	0.79	-0.8
3,017,678	-		LRK53_RS13675	0.79	+0.3
3,017,678	-		LRK53_RS13675	0.79	-1.7
3,017,678	-		LRK53_RS13675	0.79	-1.2
3,017,678	-		LRK53_RS13675	0.79	-0.1
3,017,678	-		LRK53_RS13675	0.79	-2.9
3,017,678	-		LRK53_RS13675	0.79	-1.5
3,017,678	-		LRK53_RS13675	0.79	-0.7
3,017,678	-		LRK53_RS13675	0.79	-0.5
3,017,678	-		LRK53_RS13675	0.79	-0.6
3,017,678	-		LRK53_RS13675	0.79	+0.9
3,017,722	+		LRK53_RS13675	0.83	-0.1
3,017,723	-		LRK53_RS13675	0.83	-0.3
3,017,908	-				-1.4
3,017,908	-				+1.9
3,017,908	-				+0.9
3,017,977	-				-1.4
3,018,066	+				-0.7
3,018,067	-				+0.9
3,018,067	-				-0.6
3,018,067	-				+0.9
3,018,116	-				-0.4
3,018,116	-				-0.1
3,018,372	+		LRK53_RS13680	0.30	-0.7
3,018,372	+		LRK53_RS13680	0.30	+0.3
3,018,372	+		LRK53_RS13680	0.30	-1.5
3,018,372	+		LRK53_RS13680	0.30	+1.9
3,018,372	+		LRK53_RS13680	0.30	+0.9
3,018,372	+		LRK53_RS13680	0.30	-1.9
3,018,372	+		LRK53_RS13680	0.30	-0.5
3,018,372	+		LRK53_RS13680	0.30	+0.6
3,018,372	+		LRK53_RS13680	0.30	-0.4
3,018,372	+		LRK53_RS13680	0.30	-1.2
3,018,372	+		LRK53_RS13680	0.30	-1.9
3,018,372	+		LRK53_RS13680	0.30	-1.3
3,018,372	+		LRK53_RS13680	0.30	-0.7
3,018,372	+		LRK53_RS13680	0.30	-1.1
3,018,372	+		LRK53_RS13680	0.30	-1.4
3,018,373	-		LRK53_RS13680	0.30	-0.1
3,018,373	-		LRK53_RS13680	0.30	-1.4
3,018,373	-		LRK53_RS13680	0.30	-0.3
3,018,373	-		LRK53_RS13680	0.30	-1.1
3,018,373	-		LRK53_RS13680	0.30	+0.3
3,018,373	-		LRK53_RS13680	0.30	-1.5
3,018,373	-		LRK53_RS13680	0.30	-1.2
3,018,378	+		LRK53_RS13680	0.31	-0.1
3,018,378	+		LRK53_RS13680	0.31	+0.0
3,018,378	+		LRK53_RS13680	0.31	-1.2
3,018,378	+		LRK53_RS13680	0.31	-1.9
3,018,378	+		LRK53_RS13680	0.31	-2.4
3,018,379	-		LRK53_RS13680	0.31	-1.9
3,018,379	-		LRK53_RS13680	0.31	-1.1
3,018,379	-		LRK53_RS13680	0.31	-1.1
3,018,379	-		LRK53_RS13680	0.31	-1.4
3,018,379	-		LRK53_RS13680	0.31	-1.0
3,018,405	+		LRK53_RS13680	0.35	-2.0
3,018,509	-		LRK53_RS13680	0.51	-0.1
3,018,509	-		LRK53_RS13680	0.51	-1.1
3,018,509	-		LRK53_RS13680	0.51	-0.7
3,018,519	+		LRK53_RS13680	0.53	-1.1
3,018,519	+		LRK53_RS13680	0.53	+1.5
3,018,519	+		LRK53_RS13680	0.53	-0.7
3,018,519	+		LRK53_RS13680	0.53	-0.7
3,018,519	+		LRK53_RS13680	0.53	-0.1
3,018,519	+		LRK53_RS13680	0.53	+0.3
3,018,519	+		LRK53_RS13680	0.53	+0.5
3,018,519	+		LRK53_RS13680	0.53	+0.9
3,018,519	+		LRK53_RS13680	0.53	-0.1
3,018,519	+		LRK53_RS13680	0.53	-1.1
3,018,519	+		LRK53_RS13680	0.53	-1.9
3,018,519	+		LRK53_RS13680	0.53	-0.7
3,018,519	+		LRK53_RS13680	0.53	-0.3
3,018,519	+		LRK53_RS13680	0.53	+0.9
3,018,519	+		LRK53_RS13680	0.53	-0.9
3,018,519	+		LRK53_RS13680	0.53	-1.7
3,018,519	+		LRK53_RS13680	0.53	-1.1
3,018,519	+		LRK53_RS13680	0.53	-1.2
3,018,519	+		LRK53_RS13680	0.53	-1.4
3,018,520	-		LRK53_RS13680	0.53	-1.6
3,018,520	-		LRK53_RS13680	0.53	-2.6
3,018,520	-		LRK53_RS13680	0.53	-0.6
3,018,520	-		LRK53_RS13680	0.53	-1.8
3,018,520	-		LRK53_RS13680	0.53	-1.1
3,018,520	-		LRK53_RS13680	0.53	-2.0
3,018,520	-		LRK53_RS13680	0.53	-0.1
3,018,520	-		LRK53_RS13680	0.53	-0.3
3,018,520	-		LRK53_RS13680	0.53	-1.6
3,018,520	-		LRK53_RS13680	0.53	-0.1
3,018,520	-		LRK53_RS13680	0.53	-2.0
3,018,520	-		LRK53_RS13680	0.53	-0.1
3,018,520	-		LRK53_RS13680	0.53	+0.6
3,018,520	-		LRK53_RS13680	0.53	+0.9
3,018,520	-		LRK53_RS13680	0.53	-2.3
3,018,520	-		LRK53_RS13680	0.53	-1.9
3,018,520	-		LRK53_RS13680	0.53	-0.3
3,018,520	-		LRK53_RS13680	0.53	-0.1
3,018,520	-		LRK53_RS13680	0.53	+0.9
3,018,520	-		LRK53_RS13680	0.53	-1.1
3,018,520	-		LRK53_RS13680	0.53	-0.1
3,018,520	-		LRK53_RS13680	0.53	-1.3
3,018,597	+		LRK53_RS13680	0.65	+1.3
3,018,597	+		LRK53_RS13680	0.65	+1.9
3,018,597	+		LRK53_RS13680	0.65	-1.9
3,018,597	+		LRK53_RS13680	0.65	-0.7
3,018,597	+		LRK53_RS13680	0.65	-0.7
3,018,597	+		LRK53_RS13680	0.65	-0.1
3,018,597	+		LRK53_RS13680	0.65	+0.9
3,018,597	+		LRK53_RS13680	0.65	+0.0
3,018,597	+		LRK53_RS13680	0.65	+0.1
3,018,597	+		LRK53_RS13680	0.65	-1.2
3,018,597	+		LRK53_RS13680	0.65	+0.5
3,018,598	-		LRK53_RS13680	0.65	-1.4
3,018,598	-		LRK53_RS13680	0.65	-0.7
3,018,598	-		LRK53_RS13680	0.65	-0.5
3,018,598	-		LRK53_RS13680	0.65	-1.7
3,018,653	-		LRK53_RS13680	0.74	+0.9
3,018,764	+				-2.1