Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS13065

Experiment: defined media with 20AA_mix

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	defined media with 20AA_mix
2,882,148	+		LRK53_RS13050	0.83	-1.3
2,882,148	+		LRK53_RS13050	0.83	-1.2
2,882,149	-		LRK53_RS13050	0.83	-1.7
2,882,149	-		LRK53_RS13050	0.83	-2.3
2,882,149	-		LRK53_RS13050	0.83	+0.5
2,882,188	+				+0.2
2,882,270	-		LRK53_RS13055	0.12	-0.2
2,882,459	-		LRK53_RS13055	0.66	-1.1
2,882,459	-		LRK53_RS13055	0.66	-0.7
2,882,465	+		LRK53_RS13055	0.67	-1.3
2,882,465	+		LRK53_RS13055	0.67	-0.1
2,882,466	-		LRK53_RS13055	0.68	-1.7
2,882,466	-		LRK53_RS13055	0.68	+0.3
2,882,466	-		LRK53_RS13055	0.68	-0.7
2,882,466	-		LRK53_RS13055	0.68	-0.7
2,882,466	-		LRK53_RS13055	0.68	-0.7
2,882,494	+		LRK53_RS13055	0.75	-0.7
2,882,494	+		LRK53_RS13055	0.75	-2.3
2,882,494	+		LRK53_RS13055	0.75	-2.8
2,882,494	+		LRK53_RS13055	0.75	-0.7
2,882,494	+		LRK53_RS13055	0.75	-1.9
2,882,494	+		LRK53_RS13055	0.75	-1.1
2,882,495	-		LRK53_RS13055	0.76	-0.9
2,882,495	-		LRK53_RS13055	0.76	-0.7
2,882,513	-		LRK53_RS13055	0.81	-0.7
2,882,549	+				-0.1
2,882,647	+		LRK53_RS13060	0.14	-1.7
2,882,647	+		LRK53_RS13060	0.14	-2.6
2,882,648	-		LRK53_RS13060	0.14	-0.1
2,882,648	-		LRK53_RS13060	0.14	-1.6
2,882,648	-		LRK53_RS13060	0.14	-1.3
2,882,882	+				-0.7
2,882,882	+				-1.7
2,882,883	-				-0.7
2,882,902	+				+0.3
2,882,902	+				-0.4
2,882,903	-				-0.4
2,882,903	-				-1.4
2,882,903	-				-0.4
2,882,909	+				-0.9
2,882,909	+				-1.1
2,882,909	+				-1.3
2,882,909	+				-1.4
2,882,909	+				-0.7
2,882,909	+				-1.3
2,882,909	+				-0.4
2,882,909	+				-2.1
2,882,909	+				-1.4
2,882,909	+				-0.7
2,882,909	+				-0.7
2,882,910	-				-0.7
2,882,910	-				+0.9
2,882,910	-				-1.7
2,882,910	-				-0.7
2,882,910	-				-0.7
2,882,910	-				+0.1
2,882,910	-				-0.1
2,882,910	-				-0.1
2,882,910	-				-0.4
2,883,186	-				-0.7
2,883,281	+		LRK53_RS13065	0.12	-0.7
2,883,281	+		LRK53_RS13065	0.12	-1.4
2,883,282	-		LRK53_RS13065	0.12	-1.7
2,883,282	-		LRK53_RS13065	0.12	-1.4
2,883,282	-		LRK53_RS13065	0.12	+0.9
2,883,282	-		LRK53_RS13065	0.12	-1.9
2,883,396	-		LRK53_RS13065	0.18	+0.1
2,883,518	+		LRK53_RS13065	0.25	+0.6
2,883,518	+		LRK53_RS13065	0.25	-1.9
2,883,519	-		LRK53_RS13065	0.25	+0.9
2,883,519	-		LRK53_RS13065	0.25	-0.9
2,883,689	+		LRK53_RS13065	0.35	+0.1
2,883,689	+		LRK53_RS13065	0.35	-0.1
2,883,689	+		LRK53_RS13065	0.35	+0.9
2,883,689	+		LRK53_RS13065	0.35	-1.4
2,883,689	+		LRK53_RS13065	0.35	-0.1
2,883,689	+		LRK53_RS13065	0.35	-0.7
2,883,689	+		LRK53_RS13065	0.35	-0.6
2,883,689	+		LRK53_RS13065	0.35	-0.1
2,883,689	+		LRK53_RS13065	0.35	-1.9
2,883,689	+		LRK53_RS13065	0.35	+0.9
2,883,690	-		LRK53_RS13065	0.35	+0.9
2,883,690	-		LRK53_RS13065	0.35	-1.4
2,883,690	-		LRK53_RS13065	0.35	-1.9
2,883,690	-		LRK53_RS13065	0.35	+0.1
2,883,690	-		LRK53_RS13065	0.35	-0.8
2,884,124	+		LRK53_RS13065	0.59	-0.1
2,884,124	+		LRK53_RS13065	0.59	-1.4
2,884,125	-		LRK53_RS13065	0.59	-2.9
2,884,125	-		LRK53_RS13065	0.59	-2.1
2,884,184	+		LRK53_RS13065	0.63	-1.1
2,884,184	+		LRK53_RS13065	0.63	-0.9
2,884,185	-		LRK53_RS13065	0.63	-0.9
2,884,185	-		LRK53_RS13065	0.63	-1.1
2,884,185	-		LRK53_RS13065	0.63	-2.7
2,884,304	+		LRK53_RS13065	0.69	+0.9
2,884,304	+		LRK53_RS13065	0.69	-2.1
2,884,304	+		LRK53_RS13065	0.69	-1.9
2,884,304	+		LRK53_RS13065	0.69	-2.2
2,884,304	+		LRK53_RS13065	0.69	-0.1
2,884,304	+		LRK53_RS13065	0.69	-0.7
2,884,305	-		LRK53_RS13065	0.69	+0.3
2,884,305	-		LRK53_RS13065	0.69	-0.3
2,884,305	-		LRK53_RS13065	0.69	-0.1
2,884,305	-		LRK53_RS13065	0.69	-0.7
2,884,415	+		LRK53_RS13065	0.76	-1.1
2,884,415	+		LRK53_RS13065	0.76	-0.9
2,884,416	-		LRK53_RS13065	0.76	-0.7
2,884,416	-		LRK53_RS13065	0.76	+1.9
2,884,416	-		LRK53_RS13065	0.76	-0.2
2,884,416	-		LRK53_RS13065	0.76	-0.7
2,884,416	-		LRK53_RS13065	0.76	-1.1
2,884,508	+		LRK53_RS13065	0.81	-0.4
2,884,509	-		LRK53_RS13065	0.81	-2.3
2,884,509	-		LRK53_RS13065	0.81	-1.4
2,884,509	-		LRK53_RS13065	0.81	+0.9
2,884,517	+		LRK53_RS13065	0.81	-2.7
2,884,517	+		LRK53_RS13065	0.81	-1.4
2,884,517	+		LRK53_RS13065	0.81	-0.6
2,884,517	+		LRK53_RS13065	0.81	+0.5
2,884,517	+		LRK53_RS13065	0.81	-0.7
2,884,518	-		LRK53_RS13065	0.81	-0.7
2,884,518	-		LRK53_RS13065	0.81	-1.1
2,884,518	-		LRK53_RS13065	0.81	-0.7
2,884,518	-		LRK53_RS13065	0.81	-1.0
2,884,518	-		LRK53_RS13065	0.81	+1.6
2,884,632	+		LRK53_RS13065	0.88	+0.3
2,884,633	-		LRK53_RS13065	0.88	-0.7
2,884,633	-		LRK53_RS13065	0.88	-0.1
2,884,633	-		LRK53_RS13065	0.88	-0.1
2,884,716	+				-1.3
2,884,716	+				-1.1
2,884,716	+				-1.4
2,884,716	+				-1.4
2,884,716	+				-1.4
2,884,717	-				-0.8
2,884,717	-				+0.1
2,884,717	-				-1.6
2,884,755	+				-2.2
2,884,756	-				+0.9
2,884,756	-				-1.1
2,884,826	+				-2.2
2,884,826	+				-0.1
2,884,826	+				+0.9
2,884,826	+				-0.3
2,884,826	+				-0.7
2,884,826	+				+0.3
2,884,826	+				+1.9
2,884,827	-				-1.7
2,884,827	-				-0.7
2,884,827	-				-2.3
2,884,827	-				-1.2
2,884,827	-				-1.4
2,884,827	-				+0.9
2,884,827	-				-1.7
2,884,827	-				+0.3
2,884,827	-				-0.9
2,884,827	-				+0.1
2,884,827	-				+1.5
2,884,827	-				-1.3
2,885,056	+		LRK53_RS13070	0.45	-1.1
2,885,056	+		LRK53_RS13070	0.45	-1.1
2,885,056	+		LRK53_RS13070	0.45	-0.6
2,885,056	+		LRK53_RS13070	0.45	-1.8
2,885,056	+		LRK53_RS13070	0.45	+0.9
2,885,057	-		LRK53_RS13070	0.45	+0.9
2,885,057	-		LRK53_RS13070	0.45	-0.1
2,885,057	-		LRK53_RS13070	0.45	+0.1
2,885,057	-		LRK53_RS13070	0.45	-0.7
2,885,057	-		LRK53_RS13070	0.45	-0.1
2,885,292	+				-0.6
2,885,382	+				-0.4
2,885,382	+				-0.7
2,885,382	+				-0.8
2,885,382	+				-1.1
2,885,382	+				-1.0
2,885,382	+				+1.9
2,885,383	-				-0.6
2,885,383	-				-1.1
2,885,383	-				+0.9
2,885,383	-				-1.1
2,885,383	-				-0.1
2,885,383	-				+0.0
2,885,383	-				-2.1
2,885,715	+				+0.5
2,885,715	+				+0.2
2,885,715	+				-1.9
2,885,716	-				-0.7
2,885,788	+				+0.7
2,885,789	-				-0.7
2,885,789	-				+1.5
2,885,789	-				-2.3