Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS11495

Experiment: defined media with 20AA_mix

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS11480 and LRK53_RS11485 are separated by 286 nucleotidesLRK53_RS11485 and LRK53_RS11490 are separated by 11 nucleotidesLRK53_RS11490 and LRK53_RS11495 are separated by 7 nucleotidesLRK53_RS11495 and LRK53_RS11500 are separated by 125 nucleotidesLRK53_RS11500 and LRK53_RS11505 are separated by 59 nucleotides LRK53_RS11480: LRK53_RS11480 - hypothetical protein, at 2,556,404 to 2,556,649 _RS11480 LRK53_RS11485: LRK53_RS11485 - tRNA-Leu, at 2,556,936 to 2,557,020 _RS11485 LRK53_RS11490: LRK53_RS11490 - preprotein translocase subunit SecG, at 2,557,032 to 2,557,493 _RS11490 LRK53_RS11495: LRK53_RS11495 - triose-phosphate isomerase, at 2,557,501 to 2,558,268 _RS11495 LRK53_RS11500: LRK53_RS11500 - SDR family oxidoreductase, at 2,558,394 to 2,559,203 _RS11500 LRK53_RS11505: LRK53_RS11505 - DUF6445 family protein, at 2,559,263 to 2,559,937 _RS11505 Position (kb) 2557 2558 2559Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2556.701 kb on + strandat 2556.701 kb on + strandat 2556.702 kb on - strandat 2556.744 kb on + strandat 2556.745 kb on - strandat 2556.745 kb on - strandat 2556.745 kb on - strandat 2556.745 kb on - strandat 2556.760 kb on + strandat 2556.760 kb on + strandat 2556.761 kb on - strandat 2556.761 kb on - strandat 2556.761 kb on - strandat 2556.761 kb on - strandat 2556.771 kb on + strandat 2556.800 kb on + strandat 2556.800 kb on + strandat 2556.800 kb on + strandat 2556.800 kb on + strandat 2556.800 kb on + strandat 2556.800 kb on + strandat 2556.801 kb on - strandat 2556.801 kb on - strandat 2556.801 kb on - strandat 2556.801 kb on - strandat 2556.801 kb on - strandat 2556.902 kb on + strandat 2556.934 kb on + strandat 2556.934 kb on + strandat 2556.934 kb on + strandat 2556.934 kb on + strandat 2556.934 kb on + strandat 2556.934 kb on + strandat 2556.934 kb on + strandat 2556.934 kb on + strandat 2556.934 kb on + strandat 2556.934 kb on + strandat 2556.934 kb on + strandat 2556.934 kb on + strandat 2556.935 kb on - strandat 2556.935 kb on - strandat 2556.935 kb on - strandat 2556.935 kb on - strandat 2556.935 kb on - strandat 2556.935 kb on - strandat 2556.935 kb on - strandat 2556.935 kb on - strandat 2556.935 kb on - strandat 2556.935 kb on - strandat 2557.066 kb on - strandat 2557.066 kb on - strandat 2557.066 kb on - strandat 2557.277 kb on - strand, within LRK53_RS11490at 2557.277 kb on - strand, within LRK53_RS11490at 2557.277 kb on - strand, within LRK53_RS11490at 2557.277 kb on - strand, within LRK53_RS11490at 2557.277 kb on - strand, within LRK53_RS11490at 2557.277 kb on - strand, within LRK53_RS11490at 2557.277 kb on - strand, within LRK53_RS11490at 2557.277 kb on - strand, within LRK53_RS11490at 2557.277 kb on - strand, within LRK53_RS11490at 2557.277 kb on - strand, within LRK53_RS11490at 2557.277 kb on - strand, within LRK53_RS11490at 2557.277 kb on - strand, within LRK53_RS11490at 2557.277 kb on - strand, within LRK53_RS11490at 2557.277 kb on - strand, within LRK53_RS11490at 2557.277 kb on - strand, within LRK53_RS11490at 2557.277 kb on - strand, within LRK53_RS11490at 2557.503 kb on - strandat 2558.670 kb on + strand, within LRK53_RS11500at 2558.684 kb on + strand, within LRK53_RS11500at 2558.685 kb on - strand, within LRK53_RS11500at 2558.833 kb on + strand, within LRK53_RS11500at 2558.833 kb on + strand, within LRK53_RS11500at 2558.834 kb on - strand, within LRK53_RS11500at 2558.859 kb on + strand, within LRK53_RS11500at 2558.859 kb on + strand, within LRK53_RS11500at 2558.859 kb on + strand, within LRK53_RS11500at 2558.860 kb on - strand, within LRK53_RS11500at 2558.860 kb on - strand, within LRK53_RS11500at 2558.860 kb on - strand, within LRK53_RS11500at 2558.860 kb on - strand, within LRK53_RS11500at 2558.860 kb on - strand, within LRK53_RS11500at 2558.860 kb on - strand, within LRK53_RS11500at 2558.860 kb on - strand, within LRK53_RS11500at 2558.860 kb on - strand, within LRK53_RS11500at 2558.860 kb on - strand, within LRK53_RS11500at 2558.877 kb on + strand, within LRK53_RS11500at 2558.877 kb on + strand, within LRK53_RS11500at 2558.877 kb on + strand, within LRK53_RS11500at 2558.877 kb on + strand, within LRK53_RS11500at 2558.877 kb on + strand, within LRK53_RS11500at 2558.877 kb on + strand, within LRK53_RS11500at 2558.878 kb on - strand, within LRK53_RS11500at 2558.878 kb on - strand, within LRK53_RS11500at 2558.878 kb on - strand, within LRK53_RS11500at 2558.878 kb on - strand, within LRK53_RS11500at 2558.878 kb on - strand, within LRK53_RS11500at 2558.878 kb on - strand, within LRK53_RS11500at 2559.089 kb on + strand, within LRK53_RS11500at 2559.089 kb on + strand, within LRK53_RS11500at 2559.089 kb on + strand, within LRK53_RS11500at 2559.090 kb on - strand, within LRK53_RS11500at 2559.090 kb on - strand, within LRK53_RS11500at 2559.090 kb on - strand, within LRK53_RS11500at 2559.090 kb on - strand, within LRK53_RS11500at 2559.201 kb on + strandat 2559.201 kb on + strandat 2559.201 kb on + strandat 2559.202 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 20AA_mix
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2,556,701 + -1.7
2,556,701 + -0.8
2,556,702 - +0.8
2,556,744 + -2.3
2,556,745 - +1.3
2,556,745 - +0.8
2,556,745 - -2.6
2,556,745 - -0.5
2,556,760 + -2.5
2,556,760 + -0.2
2,556,761 - -1.3
2,556,761 - -0.5
2,556,761 - +0.8
2,556,761 - -0.2
2,556,771 + -0.8
2,556,800 + -3.0
2,556,800 + -0.2
2,556,800 + -1.2
2,556,800 + -0.8
2,556,800 + -1.5
2,556,800 + +0.8
2,556,801 - +0.4
2,556,801 - -0.7
2,556,801 - -1.0
2,556,801 - -1.0
2,556,801 - -1.2
2,556,902 + -0.2
2,556,934 + +0.8
2,556,934 + +1.0
2,556,934 + -1.3
2,556,934 + -0.8
2,556,934 + +0.4
2,556,934 + -1.9
2,556,934 + -0.3
2,556,934 + +1.8
2,556,934 + -1.2
2,556,934 + -0.6
2,556,934 + -0.2
2,556,934 + -0.9
2,556,935 - -0.8
2,556,935 - -2.2
2,556,935 - -2.2
2,556,935 - +1.2
2,556,935 - -0.2
2,556,935 - -0.8
2,556,935 - -1.1
2,556,935 - -0.4
2,556,935 - +0.1
2,556,935 - -1.2
2,557,066 - +0.8
2,557,066 - -1.2
2,557,066 - -2.0
2,557,277 - LRK53_RS11490 0.53 +0.1
2,557,277 - LRK53_RS11490 0.53 -0.4
2,557,277 - LRK53_RS11490 0.53 +1.8
2,557,277 - LRK53_RS11490 0.53 +0.8
2,557,277 - LRK53_RS11490 0.53 +1.8
2,557,277 - LRK53_RS11490 0.53 -0.4
2,557,277 - LRK53_RS11490 0.53 -0.6
2,557,277 - LRK53_RS11490 0.53 -2.0
2,557,277 - LRK53_RS11490 0.53 +1.8
2,557,277 - LRK53_RS11490 0.53 +0.4
2,557,277 - LRK53_RS11490 0.53 -0.8
2,557,277 - LRK53_RS11490 0.53 +0.8
2,557,277 - LRK53_RS11490 0.53 +0.2
2,557,277 - LRK53_RS11490 0.53 -1.1
2,557,277 - LRK53_RS11490 0.53 -0.2
2,557,277 - LRK53_RS11490 0.53 -0.3
2,557,503 - -1.8
2,558,670 + LRK53_RS11500 0.34 -0.9
2,558,684 + LRK53_RS11500 0.36 -1.2
2,558,685 - LRK53_RS11500 0.36 -1.6
2,558,833 + LRK53_RS11500 0.54 -1.0
2,558,833 + LRK53_RS11500 0.54 -0.8
2,558,834 - LRK53_RS11500 0.54 +0.4
2,558,859 + LRK53_RS11500 0.57 +0.8
2,558,859 + LRK53_RS11500 0.57 -0.2
2,558,859 + LRK53_RS11500 0.57 -0.1
2,558,860 - LRK53_RS11500 0.58 -2.0
2,558,860 - LRK53_RS11500 0.58 -0.8
2,558,860 - LRK53_RS11500 0.58 +0.2
2,558,860 - LRK53_RS11500 0.58 +0.8
2,558,860 - LRK53_RS11500 0.58 -1.2
2,558,860 - LRK53_RS11500 0.58 -0.8
2,558,860 - LRK53_RS11500 0.58 +0.2
2,558,860 - LRK53_RS11500 0.58 -1.2
2,558,860 - LRK53_RS11500 0.58 +0.8
2,558,877 + LRK53_RS11500 0.60 +0.8
2,558,877 + LRK53_RS11500 0.60 +1.4
2,558,877 + LRK53_RS11500 0.60 -1.4
2,558,877 + LRK53_RS11500 0.60 -1.8
2,558,877 + LRK53_RS11500 0.60 -0.2
2,558,877 + LRK53_RS11500 0.60 -2.0
2,558,878 - LRK53_RS11500 0.60 +0.8
2,558,878 - LRK53_RS11500 0.60 +0.3
2,558,878 - LRK53_RS11500 0.60 -1.2
2,558,878 - LRK53_RS11500 0.60 -1.2
2,558,878 - LRK53_RS11500 0.60 -0.8
2,558,878 - LRK53_RS11500 0.60 -0.5
2,559,089 + LRK53_RS11500 0.86 -2.2
2,559,089 + LRK53_RS11500 0.86 -0.2
2,559,089 + LRK53_RS11500 0.86 -1.5
2,559,090 - LRK53_RS11500 0.86 -2.0
2,559,090 - LRK53_RS11500 0.86 +0.2
2,559,090 - LRK53_RS11500 0.86 -1.1
2,559,090 - LRK53_RS11500 0.86 -1.5
2,559,201 + -1.5
2,559,201 + +0.2
2,559,201 + -2.5
2,559,202 - -1.5

Or see this region's nucleotide sequence