Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS10955

Experiment: defined media with 20AA_mix

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS10950 and LRK53_RS10955 are separated by 34 nucleotidesLRK53_RS10955 and LRK53_RS10960 are separated by 7 nucleotides LRK53_RS10950: LRK53_RS10950 - DEAD/DEAH box helicase, at 2,445,891 to 2,446,979 _RS10950 LRK53_RS10955: LRK53_RS10955 - phosphopyruvate hydratase, at 2,447,014 to 2,448,294 _RS10955 LRK53_RS10960: LRK53_RS10960 - DNA mismatch repair protein MutS, at 2,448,302 to 2,449,843 _RS10960 Position (kb) 2447 2448 2449Strain fitness (log2 ratio) -2 -1 0 1 2at 2446.098 kb on + strand, within LRK53_RS10950at 2446.098 kb on + strand, within LRK53_RS10950at 2446.099 kb on - strand, within LRK53_RS10950at 2446.099 kb on - strand, within LRK53_RS10950at 2446.299 kb on + strand, within LRK53_RS10950at 2446.397 kb on - strand, within LRK53_RS10950at 2446.731 kb on + strand, within LRK53_RS10950at 2446.732 kb on - strand, within LRK53_RS10950at 2446.816 kb on - strand, within LRK53_RS10950at 2446.816 kb on - strand, within LRK53_RS10950at 2447.010 kb on - strandat 2447.010 kb on - strandat 2447.188 kb on + strand, within LRK53_RS10955at 2447.216 kb on + strand, within LRK53_RS10955at 2447.217 kb on - strand, within LRK53_RS10955at 2447.366 kb on - strand, within LRK53_RS10955at 2447.404 kb on + strand, within LRK53_RS10955at 2447.445 kb on - strand, within LRK53_RS10955at 2447.506 kb on + strand, within LRK53_RS10955at 2447.506 kb on + strand, within LRK53_RS10955at 2447.506 kb on + strand, within LRK53_RS10955at 2447.506 kb on + strand, within LRK53_RS10955at 2447.506 kb on + strand, within LRK53_RS10955at 2447.507 kb on - strand, within LRK53_RS10955at 2447.507 kb on - strand, within LRK53_RS10955at 2447.852 kb on - strand, within LRK53_RS10955at 2448.100 kb on + strand, within LRK53_RS10955at 2448.100 kb on + strand, within LRK53_RS10955at 2448.100 kb on + strand, within LRK53_RS10955at 2448.100 kb on + strand, within LRK53_RS10955at 2448.100 kb on + strand, within LRK53_RS10955at 2448.100 kb on + strand, within LRK53_RS10955at 2448.100 kb on + strand, within LRK53_RS10955at 2448.100 kb on + strand, within LRK53_RS10955at 2448.100 kb on + strand, within LRK53_RS10955at 2448.100 kb on + strand, within LRK53_RS10955at 2448.100 kb on + strand, within LRK53_RS10955at 2448.101 kb on - strand, within LRK53_RS10955at 2448.101 kb on - strand, within LRK53_RS10955at 2448.101 kb on - strand, within LRK53_RS10955at 2448.101 kb on - strand, within LRK53_RS10955at 2448.101 kb on - strand, within LRK53_RS10955at 2448.101 kb on - strand, within LRK53_RS10955at 2448.101 kb on - strand, within LRK53_RS10955at 2448.207 kb on + strandat 2448.207 kb on + strandat 2448.207 kb on + strandat 2448.311 kb on - strandat 2448.513 kb on + strand, within LRK53_RS10960at 2448.514 kb on - strand, within LRK53_RS10960at 2449.047 kb on + strand, within LRK53_RS10960at 2449.047 kb on + strand, within LRK53_RS10960at 2449.090 kb on + strand, within LRK53_RS10960at 2449.200 kb on + strand, within LRK53_RS10960at 2449.239 kb on + strand, within LRK53_RS10960at 2449.239 kb on + strand, within LRK53_RS10960at 2449.240 kb on - strand, within LRK53_RS10960at 2449.240 kb on - strand, within LRK53_RS10960at 2449.251 kb on + strand, within LRK53_RS10960at 2449.251 kb on + strand, within LRK53_RS10960at 2449.251 kb on + strand, within LRK53_RS10960at 2449.251 kb on + strand, within LRK53_RS10960at 2449.252 kb on - strand, within LRK53_RS10960at 2449.252 kb on - strand, within LRK53_RS10960at 2449.272 kb on + strand, within LRK53_RS10960at 2449.272 kb on + strand, within LRK53_RS10960at 2449.272 kb on + strand, within LRK53_RS10960at 2449.273 kb on - strand, within LRK53_RS10960at 2449.273 kb on - strand, within LRK53_RS10960at 2449.273 kb on - strand, within LRK53_RS10960at 2449.273 kb on - strand, within LRK53_RS10960at 2449.273 kb on - strand, within LRK53_RS10960

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 20AA_mix
remove
2,446,098 + LRK53_RS10950 0.19 +0.8
2,446,098 + LRK53_RS10950 0.19 -1.1
2,446,099 - LRK53_RS10950 0.19 -0.3
2,446,099 - LRK53_RS10950 0.19 +0.4
2,446,299 + LRK53_RS10950 0.37 -0.8
2,446,397 - LRK53_RS10950 0.46 -2.0
2,446,731 + LRK53_RS10950 0.77 +0.2
2,446,732 - LRK53_RS10950 0.77 +1.8
2,446,816 - LRK53_RS10950 0.85 +1.8
2,446,816 - LRK53_RS10950 0.85 -1.8
2,447,010 - -0.4
2,447,010 - +0.8
2,447,188 + LRK53_RS10955 0.14 +0.2
2,447,216 + LRK53_RS10955 0.16 -0.8
2,447,217 - LRK53_RS10955 0.16 -0.2
2,447,366 - LRK53_RS10955 0.27 -1.5
2,447,404 + LRK53_RS10955 0.30 -1.2
2,447,445 - LRK53_RS10955 0.34 -2.0
2,447,506 + LRK53_RS10955 0.38 -0.2
2,447,506 + LRK53_RS10955 0.38 +0.2
2,447,506 + LRK53_RS10955 0.38 -1.5
2,447,506 + LRK53_RS10955 0.38 +0.8
2,447,506 + LRK53_RS10955 0.38 -2.4
2,447,507 - LRK53_RS10955 0.38 -1.5
2,447,507 - LRK53_RS10955 0.38 +0.5
2,447,852 - LRK53_RS10955 0.65 -1.8
2,448,100 + LRK53_RS10955 0.85 +0.1
2,448,100 + LRK53_RS10955 0.85 -1.2
2,448,100 + LRK53_RS10955 0.85 -2.5
2,448,100 + LRK53_RS10955 0.85 +1.2
2,448,100 + LRK53_RS10955 0.85 -0.2
2,448,100 + LRK53_RS10955 0.85 -1.2
2,448,100 + LRK53_RS10955 0.85 -0.5
2,448,100 + LRK53_RS10955 0.85 -0.8
2,448,100 + LRK53_RS10955 0.85 -1.2
2,448,100 + LRK53_RS10955 0.85 -0.8
2,448,100 + LRK53_RS10955 0.85 -1.2
2,448,101 - LRK53_RS10955 0.85 +0.2
2,448,101 - LRK53_RS10955 0.85 +0.8
2,448,101 - LRK53_RS10955 0.85 +0.8
2,448,101 - LRK53_RS10955 0.85 -1.0
2,448,101 - LRK53_RS10955 0.85 +0.5
2,448,101 - LRK53_RS10955 0.85 -0.8
2,448,101 - LRK53_RS10955 0.85 +0.8
2,448,207 + +0.6
2,448,207 + +0.8
2,448,207 + -0.8
2,448,311 - -0.5
2,448,513 + LRK53_RS10960 0.14 +2.4
2,448,514 - LRK53_RS10960 0.14 -0.2
2,449,047 + LRK53_RS10960 0.48 -1.0
2,449,047 + LRK53_RS10960 0.48 -0.8
2,449,090 + LRK53_RS10960 0.51 -1.6
2,449,200 + LRK53_RS10960 0.58 -0.2
2,449,239 + LRK53_RS10960 0.61 +0.8
2,449,239 + LRK53_RS10960 0.61 -1.2
2,449,240 - LRK53_RS10960 0.61 -1.5
2,449,240 - LRK53_RS10960 0.61 +0.8
2,449,251 + LRK53_RS10960 0.62 -0.2
2,449,251 + LRK53_RS10960 0.62 +0.0
2,449,251 + LRK53_RS10960 0.62 -0.9
2,449,251 + LRK53_RS10960 0.62 -0.2
2,449,252 - LRK53_RS10960 0.62 -1.0
2,449,252 - LRK53_RS10960 0.62 -0.2
2,449,272 + LRK53_RS10960 0.63 -2.5
2,449,272 + LRK53_RS10960 0.63 -1.1
2,449,272 + LRK53_RS10960 0.63 +0.8
2,449,273 - LRK53_RS10960 0.63 -0.4
2,449,273 - LRK53_RS10960 0.63 -1.1
2,449,273 - LRK53_RS10960 0.63 -0.4
2,449,273 - LRK53_RS10960 0.63 +0.8
2,449,273 - LRK53_RS10960 0.63 -0.0

Or see this region's nucleotide sequence