Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS09445

Experiment: defined media with 20AA_mix

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS09440 and LRK53_RS09445 are separated by 122 nucleotidesLRK53_RS09445 and LRK53_RS09450 are separated by 130 nucleotidesLRK53_RS09450 and LRK53_RS09455 are separated by 182 nucleotides LRK53_RS09440: LRK53_RS09440 - propionate--CoA ligase, at 2,116,921 to 2,118,813 _RS09440 LRK53_RS09445: LRK53_RS09445 - alkyl hydroperoxide reductase subunit F, at 2,118,936 to 2,120,522 _RS09445 LRK53_RS09450: LRK53_RS09450 - alkyl hydroperoxide reductase subunit C, at 2,120,653 to 2,121,216 _RS09450 LRK53_RS09455: LRK53_RS09455 - dicarboxylate/amino acid:cation symporter, at 2,121,399 to 2,122,715 _RS09455 Position (kb) 2118 2119 2120 2121Strain fitness (log2 ratio) -2 -1 0 1 2at 2117.974 kb on + strand, within LRK53_RS09440at 2117.974 kb on + strand, within LRK53_RS09440at 2117.974 kb on + strand, within LRK53_RS09440at 2117.974 kb on + strand, within LRK53_RS09440at 2117.974 kb on + strand, within LRK53_RS09440at 2117.974 kb on + strand, within LRK53_RS09440at 2117.974 kb on + strand, within LRK53_RS09440at 2117.975 kb on - strand, within LRK53_RS09440at 2118.079 kb on + strand, within LRK53_RS09440at 2118.079 kb on + strand, within LRK53_RS09440at 2118.079 kb on + strand, within LRK53_RS09440at 2118.079 kb on + strand, within LRK53_RS09440at 2118.079 kb on + strand, within LRK53_RS09440at 2118.079 kb on + strand, within LRK53_RS09440at 2118.079 kb on + strand, within LRK53_RS09440at 2118.079 kb on + strand, within LRK53_RS09440at 2118.079 kb on + strand, within LRK53_RS09440at 2118.079 kb on + strand, within LRK53_RS09440at 2118.079 kb on + strand, within LRK53_RS09440at 2118.079 kb on + strand, within LRK53_RS09440at 2118.079 kb on + strand, within LRK53_RS09440at 2118.079 kb on + strand, within LRK53_RS09440at 2118.079 kb on + strand, within LRK53_RS09440at 2118.079 kb on + strand, within LRK53_RS09440at 2118.080 kb on - strand, within LRK53_RS09440at 2118.080 kb on - strand, within LRK53_RS09440at 2118.080 kb on - strand, within LRK53_RS09440at 2118.080 kb on - strand, within LRK53_RS09440at 2118.080 kb on - strand, within LRK53_RS09440at 2118.080 kb on - strand, within LRK53_RS09440at 2118.080 kb on - strand, within LRK53_RS09440at 2118.080 kb on - strand, within LRK53_RS09440at 2118.080 kb on - strand, within LRK53_RS09440at 2118.080 kb on - strand, within LRK53_RS09440at 2118.316 kb on + strand, within LRK53_RS09440at 2118.316 kb on + strand, within LRK53_RS09440at 2118.316 kb on + strand, within LRK53_RS09440at 2118.316 kb on + strand, within LRK53_RS09440at 2118.317 kb on - strand, within LRK53_RS09440at 2118.317 kb on - strand, within LRK53_RS09440at 2118.317 kb on - strand, within LRK53_RS09440at 2118.317 kb on - strand, within LRK53_RS09440at 2118.317 kb on - strand, within LRK53_RS09440at 2118.317 kb on - strand, within LRK53_RS09440at 2118.317 kb on - strand, within LRK53_RS09440at 2118.343 kb on + strand, within LRK53_RS09440at 2118.343 kb on + strand, within LRK53_RS09440at 2118.343 kb on + strand, within LRK53_RS09440at 2118.343 kb on + strand, within LRK53_RS09440at 2118.343 kb on + strand, within LRK53_RS09440at 2118.343 kb on + strand, within LRK53_RS09440at 2118.343 kb on + strand, within LRK53_RS09440at 2118.343 kb on + strand, within LRK53_RS09440at 2118.344 kb on - strand, within LRK53_RS09440at 2118.344 kb on - strand, within LRK53_RS09440at 2118.344 kb on - strand, within LRK53_RS09440at 2118.344 kb on - strand, within LRK53_RS09440at 2118.344 kb on - strand, within LRK53_RS09440at 2118.344 kb on - strand, within LRK53_RS09440at 2118.344 kb on - strand, within LRK53_RS09440at 2118.344 kb on - strand, within LRK53_RS09440at 2118.344 kb on - strand, within LRK53_RS09440at 2118.344 kb on - strand, within LRK53_RS09440at 2118.344 kb on - strand, within LRK53_RS09440at 2118.344 kb on - strand, within LRK53_RS09440at 2118.382 kb on + strand, within LRK53_RS09440at 2118.382 kb on + strand, within LRK53_RS09440at 2118.649 kb on + strandat 2118.649 kb on + strandat 2118.649 kb on + strandat 2118.649 kb on + strandat 2118.649 kb on + strandat 2118.649 kb on + strandat 2118.649 kb on + strandat 2118.649 kb on + strandat 2118.649 kb on + strandat 2118.650 kb on - strandat 2118.650 kb on - strandat 2118.650 kb on - strandat 2118.650 kb on - strandat 2118.819 kb on + strandat 2118.820 kb on - strandat 2119.042 kb on + strandat 2119.042 kb on + strandat 2119.042 kb on + strandat 2119.042 kb on + strandat 2119.042 kb on + strandat 2119.043 kb on - strandat 2119.043 kb on - strandat 2119.043 kb on - strandat 2119.043 kb on - strandat 2119.072 kb on - strandat 2119.226 kb on + strand, within LRK53_RS09445at 2119.238 kb on - strand, within LRK53_RS09445at 2119.238 kb on - strand, within LRK53_RS09445at 2119.238 kb on - strand, within LRK53_RS09445at 2119.238 kb on - strand, within LRK53_RS09445at 2119.238 kb on - strand, within LRK53_RS09445at 2119.492 kb on + strand, within LRK53_RS09445at 2119.492 kb on + strand, within LRK53_RS09445at 2119.492 kb on + strand, within LRK53_RS09445at 2119.493 kb on - strand, within LRK53_RS09445at 2119.493 kb on - strand, within LRK53_RS09445at 2119.493 kb on - strand, within LRK53_RS09445at 2119.514 kb on - strand, within LRK53_RS09445at 2119.514 kb on - strand, within LRK53_RS09445at 2119.687 kb on + strand, within LRK53_RS09445at 2119.738 kb on + strand, within LRK53_RS09445at 2119.738 kb on + strand, within LRK53_RS09445at 2119.780 kb on - strand, within LRK53_RS09445at 2119.780 kb on - strand, within LRK53_RS09445at 2119.837 kb on + strand, within LRK53_RS09445at 2119.837 kb on + strand, within LRK53_RS09445at 2119.837 kb on + strand, within LRK53_RS09445at 2119.837 kb on + strand, within LRK53_RS09445at 2119.838 kb on - strand, within LRK53_RS09445at 2119.838 kb on - strand, within LRK53_RS09445at 2119.838 kb on - strand, within LRK53_RS09445at 2119.838 kb on - strand, within LRK53_RS09445at 2120.002 kb on + strand, within LRK53_RS09445at 2120.051 kb on - strand, within LRK53_RS09445at 2120.051 kb on - strand, within LRK53_RS09445at 2120.070 kb on + strand, within LRK53_RS09445at 2120.070 kb on + strand, within LRK53_RS09445at 2120.070 kb on + strand, within LRK53_RS09445at 2120.070 kb on + strand, within LRK53_RS09445at 2120.070 kb on + strand, within LRK53_RS09445at 2120.070 kb on + strand, within LRK53_RS09445at 2120.071 kb on - strand, within LRK53_RS09445at 2120.071 kb on - strand, within LRK53_RS09445at 2120.071 kb on - strand, within LRK53_RS09445at 2120.071 kb on - strand, within LRK53_RS09445at 2120.071 kb on - strand, within LRK53_RS09445at 2120.155 kb on + strand, within LRK53_RS09445at 2120.155 kb on + strand, within LRK53_RS09445at 2120.155 kb on + strand, within LRK53_RS09445at 2120.155 kb on + strand, within LRK53_RS09445at 2120.155 kb on + strand, within LRK53_RS09445at 2120.156 kb on - strand, within LRK53_RS09445at 2120.156 kb on - strand, within LRK53_RS09445at 2120.156 kb on - strand, within LRK53_RS09445at 2120.156 kb on - strand, within LRK53_RS09445at 2120.156 kb on - strand, within LRK53_RS09445at 2120.156 kb on - strand, within LRK53_RS09445at 2120.156 kb on - strand, within LRK53_RS09445at 2120.170 kb on + strand, within LRK53_RS09445at 2120.190 kb on + strand, within LRK53_RS09445at 2120.191 kb on - strand, within LRK53_RS09445at 2120.485 kb on + strandat 2120.485 kb on + strandat 2120.485 kb on + strandat 2120.485 kb on + strandat 2120.485 kb on + strandat 2120.485 kb on + strandat 2120.486 kb on - strandat 2120.486 kb on - strandat 2120.486 kb on - strandat 2120.486 kb on - strandat 2120.552 kb on + strandat 2120.553 kb on - strandat 2120.586 kb on - strandat 2120.586 kb on - strandat 2120.654 kb on + strandat 2120.654 kb on + strandat 2120.654 kb on + strandat 2121.045 kb on - strand, within LRK53_RS09450at 2121.045 kb on - strand, within LRK53_RS09450at 2121.258 kb on + strandat 2121.258 kb on + strandat 2121.259 kb on - strandat 2121.259 kb on - strandat 2121.259 kb on - strandat 2121.259 kb on - strandat 2121.281 kb on + strandat 2121.313 kb on + strandat 2121.314 kb on - strandat 2121.314 kb on - strandat 2121.318 kb on - strandat 2121.331 kb on + strandat 2121.331 kb on + strandat 2121.331 kb on + strandat 2121.332 kb on - strandat 2121.332 kb on - strandat 2121.332 kb on - strandat 2121.332 kb on - strandat 2121.332 kb on - strandat 2121.332 kb on - strandat 2121.332 kb on - strandat 2121.332 kb on - strandat 2121.400 kb on + strandat 2121.434 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 20AA_mix
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2,117,974 + LRK53_RS09440 0.56 +0.0
2,117,974 + LRK53_RS09440 0.56 +0.0
2,117,974 + LRK53_RS09440 0.56 +2.0
2,117,974 + LRK53_RS09440 0.56 +0.0
2,117,974 + LRK53_RS09440 0.56 +0.8
2,117,974 + LRK53_RS09440 0.56 +0.6
2,117,974 + LRK53_RS09440 0.56 -0.9
2,117,975 - LRK53_RS09440 0.56 -0.7
2,118,079 + LRK53_RS09440 0.61 -0.6
2,118,079 + LRK53_RS09440 0.61 -0.3
2,118,079 + LRK53_RS09440 0.61 +0.4
2,118,079 + LRK53_RS09440 0.61 -1.0
2,118,079 + LRK53_RS09440 0.61 -1.6
2,118,079 + LRK53_RS09440 0.61 -0.3
2,118,079 + LRK53_RS09440 0.61 -1.0
2,118,079 + LRK53_RS09440 0.61 +1.0
2,118,079 + LRK53_RS09440 0.61 +0.4
2,118,079 + LRK53_RS09440 0.61 -0.6
2,118,079 + LRK53_RS09440 0.61 +0.6
2,118,079 + LRK53_RS09440 0.61 -0.6
2,118,079 + LRK53_RS09440 0.61 +0.4
2,118,079 + LRK53_RS09440 0.61 +0.0
2,118,079 + LRK53_RS09440 0.61 -1.3
2,118,079 + LRK53_RS09440 0.61 +1.0
2,118,080 - LRK53_RS09440 0.61 +0.0
2,118,080 - LRK53_RS09440 0.61 -1.0
2,118,080 - LRK53_RS09440 0.61 +0.4
2,118,080 - LRK53_RS09440 0.61 +1.0
2,118,080 - LRK53_RS09440 0.61 +1.0
2,118,080 - LRK53_RS09440 0.61 -1.0
2,118,080 - LRK53_RS09440 0.61 +0.4
2,118,080 - LRK53_RS09440 0.61 +2.6
2,118,080 - LRK53_RS09440 0.61 +0.4
2,118,080 - LRK53_RS09440 0.61 +1.6
2,118,316 + LRK53_RS09440 0.74 -1.6
2,118,316 + LRK53_RS09440 0.74 -0.6
2,118,316 + LRK53_RS09440 0.74 +1.0
2,118,316 + LRK53_RS09440 0.74 +1.0
2,118,317 - LRK53_RS09440 0.74 -0.5
2,118,317 - LRK53_RS09440 0.74 -1.0
2,118,317 - LRK53_RS09440 0.74 -1.0
2,118,317 - LRK53_RS09440 0.74 -0.7
2,118,317 - LRK53_RS09440 0.74 -0.7
2,118,317 - LRK53_RS09440 0.74 +1.0
2,118,317 - LRK53_RS09440 0.74 +0.0
2,118,343 + LRK53_RS09440 0.75 -1.8
2,118,343 + LRK53_RS09440 0.75 -1.8
2,118,343 + LRK53_RS09440 0.75 -0.7
2,118,343 + LRK53_RS09440 0.75 -1.0
2,118,343 + LRK53_RS09440 0.75 -2.0
2,118,343 + LRK53_RS09440 0.75 +0.0
2,118,343 + LRK53_RS09440 0.75 +0.4
2,118,343 + LRK53_RS09440 0.75 -1.4
2,118,344 - LRK53_RS09440 0.75 -0.2
2,118,344 - LRK53_RS09440 0.75 +0.0
2,118,344 - LRK53_RS09440 0.75 +1.6
2,118,344 - LRK53_RS09440 0.75 -1.0
2,118,344 - LRK53_RS09440 0.75 +1.0
2,118,344 - LRK53_RS09440 0.75 -2.0
2,118,344 - LRK53_RS09440 0.75 +0.0
2,118,344 - LRK53_RS09440 0.75 -0.9
2,118,344 - LRK53_RS09440 0.75 -0.1
2,118,344 - LRK53_RS09440 0.75 -1.0
2,118,344 - LRK53_RS09440 0.75 -0.2
2,118,344 - LRK53_RS09440 0.75 +0.4
2,118,382 + LRK53_RS09440 0.77 -0.1
2,118,382 + LRK53_RS09440 0.77 -0.9
2,118,649 + +0.3
2,118,649 + +1.0
2,118,649 + -0.6
2,118,649 + -0.3
2,118,649 + -0.1
2,118,649 + -0.7
2,118,649 + -0.2
2,118,649 + -1.3
2,118,649 + +0.2
2,118,650 - -0.5
2,118,650 - -1.0
2,118,650 - -0.4
2,118,650 - +0.4
2,118,819 + -0.6
2,118,820 - -1.3
2,119,042 + -1.9
2,119,042 + -0.9
2,119,042 + -0.6
2,119,042 + -0.6
2,119,042 + -2.3
2,119,043 - +0.8
2,119,043 - -0.6
2,119,043 - +0.4
2,119,043 - +0.7
2,119,072 - -0.8
2,119,226 + LRK53_RS09445 0.18 +0.0
2,119,238 - LRK53_RS09445 0.19 -2.0
2,119,238 - LRK53_RS09445 0.19 +1.3
2,119,238 - LRK53_RS09445 0.19 -1.3
2,119,238 - LRK53_RS09445 0.19 +1.0
2,119,238 - LRK53_RS09445 0.19 +0.0
2,119,492 + LRK53_RS09445 0.35 -0.6
2,119,492 + LRK53_RS09445 0.35 -2.3
2,119,492 + LRK53_RS09445 0.35 -1.1
2,119,493 - LRK53_RS09445 0.35 -0.6
2,119,493 - LRK53_RS09445 0.35 -1.6
2,119,493 - LRK53_RS09445 0.35 -2.1
2,119,514 - LRK53_RS09445 0.36 -1.3
2,119,514 - LRK53_RS09445 0.36 +0.0
2,119,687 + LRK53_RS09445 0.47 -2.1
2,119,738 + LRK53_RS09445 0.51 +0.0
2,119,738 + LRK53_RS09445 0.51 -1.8
2,119,780 - LRK53_RS09445 0.53 -0.2
2,119,780 - LRK53_RS09445 0.53 -0.2
2,119,837 + LRK53_RS09445 0.57 -1.0
2,119,837 + LRK53_RS09445 0.57 +0.0
2,119,837 + LRK53_RS09445 0.57 +1.0
2,119,837 + LRK53_RS09445 0.57 +1.0
2,119,838 - LRK53_RS09445 0.57 -1.3
2,119,838 - LRK53_RS09445 0.57 -1.2
2,119,838 - LRK53_RS09445 0.57 -1.6
2,119,838 - LRK53_RS09445 0.57 +0.0
2,120,002 + LRK53_RS09445 0.67 +0.2
2,120,051 - LRK53_RS09445 0.70 -1.3
2,120,051 - LRK53_RS09445 0.70 -0.6
2,120,070 + LRK53_RS09445 0.71 -1.6
2,120,070 + LRK53_RS09445 0.71 +1.6
2,120,070 + LRK53_RS09445 0.71 +0.5
2,120,070 + LRK53_RS09445 0.71 -0.6
2,120,070 + LRK53_RS09445 0.71 +1.0
2,120,070 + LRK53_RS09445 0.71 -1.8
2,120,071 - LRK53_RS09445 0.72 +0.4
2,120,071 - LRK53_RS09445 0.72 -1.1
2,120,071 - LRK53_RS09445 0.72 -0.3
2,120,071 - LRK53_RS09445 0.72 -1.0
2,120,071 - LRK53_RS09445 0.72 -1.0
2,120,155 + LRK53_RS09445 0.77 +0.0
2,120,155 + LRK53_RS09445 0.77 -1.2
2,120,155 + LRK53_RS09445 0.77 +1.8
2,120,155 + LRK53_RS09445 0.77 -1.3
2,120,155 + LRK53_RS09445 0.77 +1.0
2,120,156 - LRK53_RS09445 0.77 +0.0
2,120,156 - LRK53_RS09445 0.77 -1.9
2,120,156 - LRK53_RS09445 0.77 -2.1
2,120,156 - LRK53_RS09445 0.77 -0.6
2,120,156 - LRK53_RS09445 0.77 -1.4
2,120,156 - LRK53_RS09445 0.77 -1.7
2,120,156 - LRK53_RS09445 0.77 +0.3
2,120,170 + LRK53_RS09445 0.78 -0.3
2,120,190 + LRK53_RS09445 0.79 +1.6
2,120,191 - LRK53_RS09445 0.79 +2.0
2,120,485 + -0.2
2,120,485 + -0.7
2,120,485 + -1.0
2,120,485 + +0.2
2,120,485 + -0.6
2,120,485 + +1.0
2,120,486 - -1.6
2,120,486 - -1.7
2,120,486 - -1.2
2,120,486 - -0.1
2,120,552 + +2.0
2,120,553 - -1.0
2,120,586 - -1.6
2,120,586 - +0.0
2,120,654 + -1.2
2,120,654 + -0.6
2,120,654 + -1.0
2,121,045 - LRK53_RS09450 0.70 +0.0
2,121,045 - LRK53_RS09450 0.70 +0.0
2,121,258 + +1.0
2,121,258 + -1.0
2,121,259 - -1.8
2,121,259 - +2.0
2,121,259 - -1.3
2,121,259 - +0.3
2,121,281 + +0.0
2,121,313 + +2.0
2,121,314 - +0.0
2,121,314 - -1.8
2,121,318 - +0.3
2,121,331 + -2.7
2,121,331 + +0.0
2,121,331 + +1.0
2,121,332 - -0.6
2,121,332 - -0.7
2,121,332 - -0.3
2,121,332 - -1.1
2,121,332 - +0.0
2,121,332 - -0.6
2,121,332 - +0.0
2,121,332 - -1.8
2,121,400 + -1.3
2,121,434 - -1.0

Or see this region's nucleotide sequence