Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS09445

Experiment: defined media with 20AA_mix

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	defined media with 20AA_mix
2,117,974	+		LRK53_RS09440	0.56	+0.0
2,117,974	+		LRK53_RS09440	0.56	+0.0
2,117,974	+		LRK53_RS09440	0.56	+2.0
2,117,974	+		LRK53_RS09440	0.56	+0.0
2,117,974	+		LRK53_RS09440	0.56	+0.8
2,117,974	+		LRK53_RS09440	0.56	+0.6
2,117,974	+		LRK53_RS09440	0.56	-0.9
2,117,975	-		LRK53_RS09440	0.56	-0.7
2,118,079	+		LRK53_RS09440	0.61	-0.6
2,118,079	+		LRK53_RS09440	0.61	-0.3
2,118,079	+		LRK53_RS09440	0.61	+0.4
2,118,079	+		LRK53_RS09440	0.61	-1.0
2,118,079	+		LRK53_RS09440	0.61	-1.6
2,118,079	+		LRK53_RS09440	0.61	-0.3
2,118,079	+		LRK53_RS09440	0.61	-1.0
2,118,079	+		LRK53_RS09440	0.61	+1.0
2,118,079	+		LRK53_RS09440	0.61	+0.4
2,118,079	+		LRK53_RS09440	0.61	-0.6
2,118,079	+		LRK53_RS09440	0.61	+0.6
2,118,079	+		LRK53_RS09440	0.61	-0.6
2,118,079	+		LRK53_RS09440	0.61	+0.4
2,118,079	+		LRK53_RS09440	0.61	+0.0
2,118,079	+		LRK53_RS09440	0.61	-1.3
2,118,079	+		LRK53_RS09440	0.61	+1.0
2,118,080	-		LRK53_RS09440	0.61	+0.0
2,118,080	-		LRK53_RS09440	0.61	-1.0
2,118,080	-		LRK53_RS09440	0.61	+0.4
2,118,080	-		LRK53_RS09440	0.61	+1.0
2,118,080	-		LRK53_RS09440	0.61	+1.0
2,118,080	-		LRK53_RS09440	0.61	-1.0
2,118,080	-		LRK53_RS09440	0.61	+0.4
2,118,080	-		LRK53_RS09440	0.61	+2.6
2,118,080	-		LRK53_RS09440	0.61	+0.4
2,118,080	-		LRK53_RS09440	0.61	+1.6
2,118,316	+		LRK53_RS09440	0.74	-1.6
2,118,316	+		LRK53_RS09440	0.74	-0.6
2,118,316	+		LRK53_RS09440	0.74	+1.0
2,118,316	+		LRK53_RS09440	0.74	+1.0
2,118,317	-		LRK53_RS09440	0.74	-0.5
2,118,317	-		LRK53_RS09440	0.74	-1.0
2,118,317	-		LRK53_RS09440	0.74	-1.0
2,118,317	-		LRK53_RS09440	0.74	-0.7
2,118,317	-		LRK53_RS09440	0.74	-0.7
2,118,317	-		LRK53_RS09440	0.74	+1.0
2,118,317	-		LRK53_RS09440	0.74	+0.0
2,118,343	+		LRK53_RS09440	0.75	-1.8
2,118,343	+		LRK53_RS09440	0.75	-1.8
2,118,343	+		LRK53_RS09440	0.75	-0.7
2,118,343	+		LRK53_RS09440	0.75	-1.0
2,118,343	+		LRK53_RS09440	0.75	-2.0
2,118,343	+		LRK53_RS09440	0.75	+0.0
2,118,343	+		LRK53_RS09440	0.75	+0.4
2,118,343	+		LRK53_RS09440	0.75	-1.4
2,118,344	-		LRK53_RS09440	0.75	-0.2
2,118,344	-		LRK53_RS09440	0.75	+0.0
2,118,344	-		LRK53_RS09440	0.75	+1.6
2,118,344	-		LRK53_RS09440	0.75	-1.0
2,118,344	-		LRK53_RS09440	0.75	+1.0
2,118,344	-		LRK53_RS09440	0.75	-2.0
2,118,344	-		LRK53_RS09440	0.75	+0.0
2,118,344	-		LRK53_RS09440	0.75	-0.9
2,118,344	-		LRK53_RS09440	0.75	-0.1
2,118,344	-		LRK53_RS09440	0.75	-1.0
2,118,344	-		LRK53_RS09440	0.75	-0.2
2,118,344	-		LRK53_RS09440	0.75	+0.4
2,118,382	+		LRK53_RS09440	0.77	-0.1
2,118,382	+		LRK53_RS09440	0.77	-0.9
2,118,649	+				+0.3
2,118,649	+				+1.0
2,118,649	+				-0.6
2,118,649	+				-0.3
2,118,649	+				-0.1
2,118,649	+				-0.7
2,118,649	+				-0.2
2,118,649	+				-1.3
2,118,649	+				+0.2
2,118,650	-				-0.5
2,118,650	-				-1.0
2,118,650	-				-0.4
2,118,650	-				+0.4
2,118,819	+				-0.6
2,118,820	-				-1.3
2,119,042	+				-1.9
2,119,042	+				-0.9
2,119,042	+				-0.6
2,119,042	+				-0.6
2,119,042	+				-2.3
2,119,043	-				+0.8
2,119,043	-				-0.6
2,119,043	-				+0.4
2,119,043	-				+0.7
2,119,072	-				-0.8
2,119,226	+		LRK53_RS09445	0.18	+0.0
2,119,238	-		LRK53_RS09445	0.19	-2.0
2,119,238	-		LRK53_RS09445	0.19	+1.3
2,119,238	-		LRK53_RS09445	0.19	-1.3
2,119,238	-		LRK53_RS09445	0.19	+1.0
2,119,238	-		LRK53_RS09445	0.19	+0.0
2,119,492	+		LRK53_RS09445	0.35	-0.6
2,119,492	+		LRK53_RS09445	0.35	-2.3
2,119,492	+		LRK53_RS09445	0.35	-1.1
2,119,493	-		LRK53_RS09445	0.35	-0.6
2,119,493	-		LRK53_RS09445	0.35	-1.6
2,119,493	-		LRK53_RS09445	0.35	-2.1
2,119,514	-		LRK53_RS09445	0.36	-1.3
2,119,514	-		LRK53_RS09445	0.36	+0.0
2,119,687	+		LRK53_RS09445	0.47	-2.1
2,119,738	+		LRK53_RS09445	0.51	+0.0
2,119,738	+		LRK53_RS09445	0.51	-1.8
2,119,780	-		LRK53_RS09445	0.53	-0.2
2,119,780	-		LRK53_RS09445	0.53	-0.2
2,119,837	+		LRK53_RS09445	0.57	-1.0
2,119,837	+		LRK53_RS09445	0.57	+0.0
2,119,837	+		LRK53_RS09445	0.57	+1.0
2,119,837	+		LRK53_RS09445	0.57	+1.0
2,119,838	-		LRK53_RS09445	0.57	-1.3
2,119,838	-		LRK53_RS09445	0.57	-1.2
2,119,838	-		LRK53_RS09445	0.57	-1.6
2,119,838	-		LRK53_RS09445	0.57	+0.0
2,120,002	+		LRK53_RS09445	0.67	+0.2
2,120,051	-		LRK53_RS09445	0.70	-1.3
2,120,051	-		LRK53_RS09445	0.70	-0.6
2,120,070	+		LRK53_RS09445	0.71	-1.6
2,120,070	+		LRK53_RS09445	0.71	+1.6
2,120,070	+		LRK53_RS09445	0.71	+0.5
2,120,070	+		LRK53_RS09445	0.71	-0.6
2,120,070	+		LRK53_RS09445	0.71	+1.0
2,120,070	+		LRK53_RS09445	0.71	-1.8
2,120,071	-		LRK53_RS09445	0.72	+0.4
2,120,071	-		LRK53_RS09445	0.72	-1.1
2,120,071	-		LRK53_RS09445	0.72	-0.3
2,120,071	-		LRK53_RS09445	0.72	-1.0
2,120,071	-		LRK53_RS09445	0.72	-1.0
2,120,155	+		LRK53_RS09445	0.77	+0.0
2,120,155	+		LRK53_RS09445	0.77	-1.2
2,120,155	+		LRK53_RS09445	0.77	+1.8
2,120,155	+		LRK53_RS09445	0.77	-1.3
2,120,155	+		LRK53_RS09445	0.77	+1.0
2,120,156	-		LRK53_RS09445	0.77	+0.0
2,120,156	-		LRK53_RS09445	0.77	-1.9
2,120,156	-		LRK53_RS09445	0.77	-2.1
2,120,156	-		LRK53_RS09445	0.77	-0.6
2,120,156	-		LRK53_RS09445	0.77	-1.4
2,120,156	-		LRK53_RS09445	0.77	-1.7
2,120,156	-		LRK53_RS09445	0.77	+0.3
2,120,170	+		LRK53_RS09445	0.78	-0.3
2,120,190	+		LRK53_RS09445	0.79	+1.6
2,120,191	-		LRK53_RS09445	0.79	+2.0
2,120,485	+				-0.2
2,120,485	+				-0.7
2,120,485	+				-1.0
2,120,485	+				+0.2
2,120,485	+				-0.6
2,120,485	+				+1.0
2,120,486	-				-1.6
2,120,486	-				-1.7
2,120,486	-				-1.2
2,120,486	-				-0.1
2,120,552	+				+2.0
2,120,553	-				-1.0
2,120,586	-				-1.6
2,120,586	-				+0.0
2,120,654	+				-1.2
2,120,654	+				-0.6
2,120,654	+				-1.0
2,121,045	-		LRK53_RS09450	0.70	+0.0
2,121,045	-		LRK53_RS09450	0.70	+0.0
2,121,258	+				+1.0
2,121,258	+				-1.0
2,121,259	-				-1.8
2,121,259	-				+2.0
2,121,259	-				-1.3
2,121,259	-				+0.3
2,121,281	+				+0.0
2,121,313	+				+2.0
2,121,314	-				+0.0
2,121,314	-				-1.8
2,121,318	-				+0.3
2,121,331	+				-2.7
2,121,331	+				+0.0
2,121,331	+				+1.0
2,121,332	-				-0.6
2,121,332	-				-0.7
2,121,332	-				-0.3
2,121,332	-				-1.1
2,121,332	-				+0.0
2,121,332	-				-0.6
2,121,332	-				+0.0
2,121,332	-				-1.8
2,121,400	+				-1.3
2,121,434	-				-1.0