Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03525

Experiment: defined media with 20AA_mix

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS03520 and LRK53_RS03525 are separated by 154 nucleotidesLRK53_RS03525 and LRK53_RS03530 are separated by 26 nucleotidesLRK53_RS03530 and LRK53_RS03535 are separated by 140 nucleotides LRK53_RS03520: LRK53_RS03520 - prolyl aminopeptidase, at 831,047 to 832,000 _RS03520 LRK53_RS03525: LRK53_RS03525 - acid phosphatase, at 832,155 to 833,849 _RS03525 LRK53_RS03530: LRK53_RS03530 - Lrp/AsnC family transcriptional regulator, at 833,876 to 834,370 _RS03530 LRK53_RS03535: LRK53_RS03535 - DMT family transporter, at 834,511 to 835,443 _RS03535 Position (kb) 832 833 834Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 831.174 kb on + strand, within LRK53_RS03520at 831.174 kb on + strand, within LRK53_RS03520at 831.175 kb on - strand, within LRK53_RS03520at 831.175 kb on - strand, within LRK53_RS03520at 831.283 kb on + strand, within LRK53_RS03520at 831.283 kb on + strand, within LRK53_RS03520at 831.283 kb on + strand, within LRK53_RS03520at 831.283 kb on + strand, within LRK53_RS03520at 831.283 kb on + strand, within LRK53_RS03520at 831.283 kb on + strand, within LRK53_RS03520at 831.283 kb on + strand, within LRK53_RS03520at 831.283 kb on + strand, within LRK53_RS03520at 831.283 kb on + strand, within LRK53_RS03520at 831.283 kb on + strand, within LRK53_RS03520at 831.283 kb on + strand, within LRK53_RS03520at 831.283 kb on + strand, within LRK53_RS03520at 831.283 kb on + strand, within LRK53_RS03520at 831.283 kb on + strand, within LRK53_RS03520at 831.283 kb on + strand, within LRK53_RS03520at 831.284 kb on - strand, within LRK53_RS03520at 831.284 kb on - strand, within LRK53_RS03520at 831.284 kb on - strand, within LRK53_RS03520at 831.284 kb on - strand, within LRK53_RS03520at 831.284 kb on - strand, within LRK53_RS03520at 831.284 kb on - strand, within LRK53_RS03520at 831.284 kb on - strand, within LRK53_RS03520at 831.284 kb on - strand, within LRK53_RS03520at 831.284 kb on - strand, within LRK53_RS03520at 831.284 kb on - strand, within LRK53_RS03520at 831.284 kb on - strand, within LRK53_RS03520at 831.284 kb on - strand, within LRK53_RS03520at 831.284 kb on - strand, within LRK53_RS03520at 831.284 kb on - strand, within LRK53_RS03520at 831.284 kb on - strand, within LRK53_RS03520at 831.284 kb on - strand, within LRK53_RS03520at 831.284 kb on - strand, within LRK53_RS03520at 831.284 kb on - strand, within LRK53_RS03520at 831.284 kb on - strand, within LRK53_RS03520at 831.284 kb on - strand, within LRK53_RS03520at 831.284 kb on - strand, within LRK53_RS03520at 831.284 kb on - strand, within LRK53_RS03520at 831.297 kb on + strand, within LRK53_RS03520at 831.297 kb on + strand, within LRK53_RS03520at 831.298 kb on - strand, within LRK53_RS03520at 831.298 kb on - strand, within LRK53_RS03520at 831.298 kb on - strand, within LRK53_RS03520at 831.298 kb on - strand, within LRK53_RS03520at 831.463 kb on - strand, within LRK53_RS03520at 831.463 kb on - strand, within LRK53_RS03520at 831.645 kb on + strand, within LRK53_RS03520at 831.645 kb on + strand, within LRK53_RS03520at 831.646 kb on - strand, within LRK53_RS03520at 831.646 kb on - strand, within LRK53_RS03520at 831.748 kb on + strand, within LRK53_RS03520at 831.748 kb on + strand, within LRK53_RS03520at 831.748 kb on + strand, within LRK53_RS03520at 831.748 kb on + strand, within LRK53_RS03520at 831.748 kb on + strand, within LRK53_RS03520at 831.748 kb on + strand, within LRK53_RS03520at 831.748 kb on + strand, within LRK53_RS03520at 831.748 kb on + strand, within LRK53_RS03520at 831.748 kb on + strand, within LRK53_RS03520at 831.748 kb on + strand, within LRK53_RS03520at 831.749 kb on - strand, within LRK53_RS03520at 831.749 kb on - strand, within LRK53_RS03520at 831.749 kb on - strand, within LRK53_RS03520at 831.749 kb on - strand, within LRK53_RS03520at 831.749 kb on - strand, within LRK53_RS03520at 831.749 kb on - strand, within LRK53_RS03520at 831.749 kb on - strand, within LRK53_RS03520at 831.749 kb on - strand, within LRK53_RS03520at 831.749 kb on - strand, within LRK53_RS03520at 831.749 kb on - strand, within LRK53_RS03520at 831.749 kb on - strand, within LRK53_RS03520at 831.819 kb on + strand, within LRK53_RS03520at 831.820 kb on - strand, within LRK53_RS03520at 831.820 kb on - strand, within LRK53_RS03520at 831.820 kb on - strand, within LRK53_RS03520at 831.822 kb on + strand, within LRK53_RS03520at 831.822 kb on + strand, within LRK53_RS03520at 831.822 kb on + strand, within LRK53_RS03520at 831.823 kb on - strand, within LRK53_RS03520at 831.823 kb on - strand, within LRK53_RS03520at 831.823 kb on - strand, within LRK53_RS03520at 831.849 kb on + strand, within LRK53_RS03520at 831.850 kb on - strand, within LRK53_RS03520at 831.850 kb on - strand, within LRK53_RS03520at 831.881 kb on + strand, within LRK53_RS03520at 831.881 kb on + strand, within LRK53_RS03520at 831.881 kb on + strand, within LRK53_RS03520at 831.882 kb on - strand, within LRK53_RS03520at 831.882 kb on - strand, within LRK53_RS03520at 831.969 kb on + strandat 831.987 kb on + strandat 831.987 kb on + strandat 831.987 kb on + strandat 831.987 kb on + strandat 831.987 kb on + strandat 831.987 kb on + strandat 831.987 kb on + strandat 831.987 kb on + strandat 831.987 kb on + strandat 831.987 kb on + strandat 831.987 kb on + strandat 831.988 kb on - strandat 831.988 kb on - strandat 831.988 kb on - strandat 831.988 kb on - strandat 831.988 kb on - strandat 831.988 kb on - strandat 831.988 kb on - strandat 832.558 kb on + strand, within LRK53_RS03525at 832.558 kb on + strand, within LRK53_RS03525at 832.558 kb on + strand, within LRK53_RS03525at 832.558 kb on + strand, within LRK53_RS03525at 832.558 kb on + strand, within LRK53_RS03525at 832.559 kb on - strand, within LRK53_RS03525at 832.559 kb on - strand, within LRK53_RS03525at 832.559 kb on - strand, within LRK53_RS03525at 832.559 kb on - strand, within LRK53_RS03525at 832.559 kb on - strand, within LRK53_RS03525at 832.559 kb on - strand, within LRK53_RS03525at 832.690 kb on + strand, within LRK53_RS03525at 832.690 kb on + strand, within LRK53_RS03525at 832.690 kb on + strand, within LRK53_RS03525at 832.690 kb on + strand, within LRK53_RS03525at 832.691 kb on - strand, within LRK53_RS03525at 832.691 kb on - strand, within LRK53_RS03525at 832.691 kb on - strand, within LRK53_RS03525at 832.691 kb on - strand, within LRK53_RS03525at 832.691 kb on - strand, within LRK53_RS03525at 832.691 kb on - strand, within LRK53_RS03525at 833.107 kb on + strand, within LRK53_RS03525at 833.108 kb on - strand, within LRK53_RS03525at 833.110 kb on + strand, within LRK53_RS03525at 833.110 kb on + strand, within LRK53_RS03525at 833.111 kb on - strand, within LRK53_RS03525at 833.111 kb on - strand, within LRK53_RS03525at 833.111 kb on - strand, within LRK53_RS03525at 833.134 kb on + strand, within LRK53_RS03525at 833.134 kb on + strand, within LRK53_RS03525at 833.134 kb on + strand, within LRK53_RS03525at 833.134 kb on + strand, within LRK53_RS03525at 833.135 kb on - strand, within LRK53_RS03525at 833.135 kb on - strand, within LRK53_RS03525at 833.135 kb on - strand, within LRK53_RS03525at 833.135 kb on - strand, within LRK53_RS03525at 833.135 kb on - strand, within LRK53_RS03525at 833.194 kb on + strand, within LRK53_RS03525at 833.194 kb on + strand, within LRK53_RS03525at 833.194 kb on + strand, within LRK53_RS03525at 833.194 kb on + strand, within LRK53_RS03525at 833.195 kb on - strand, within LRK53_RS03525at 833.195 kb on - strand, within LRK53_RS03525at 833.195 kb on - strand, within LRK53_RS03525at 833.195 kb on - strand, within LRK53_RS03525at 833.195 kb on - strand, within LRK53_RS03525at 833.195 kb on - strand, within LRK53_RS03525at 833.195 kb on - strand, within LRK53_RS03525at 833.195 kb on - strand, within LRK53_RS03525at 833.195 kb on - strand, within LRK53_RS03525at 833.326 kb on + strand, within LRK53_RS03525at 833.326 kb on + strand, within LRK53_RS03525at 833.326 kb on + strand, within LRK53_RS03525at 833.326 kb on + strand, within LRK53_RS03525at 833.355 kb on + strand, within LRK53_RS03525at 833.355 kb on + strand, within LRK53_RS03525at 833.355 kb on + strand, within LRK53_RS03525at 833.356 kb on - strand, within LRK53_RS03525at 833.356 kb on - strand, within LRK53_RS03525at 833.505 kb on - strand, within LRK53_RS03525at 833.623 kb on + strand, within LRK53_RS03525at 833.623 kb on + strand, within LRK53_RS03525at 833.623 kb on + strand, within LRK53_RS03525at 833.623 kb on + strand, within LRK53_RS03525at 833.623 kb on + strand, within LRK53_RS03525at 833.624 kb on - strand, within LRK53_RS03525at 833.624 kb on - strand, within LRK53_RS03525at 833.624 kb on - strand, within LRK53_RS03525at 833.624 kb on - strand, within LRK53_RS03525at 834.294 kb on + strand, within LRK53_RS03530at 834.295 kb on - strand, within LRK53_RS03530at 834.350 kb on + strandat 834.350 kb on + strandat 834.350 kb on + strandat 834.351 kb on - strandat 834.351 kb on - strandat 834.351 kb on - strandat 834.425 kb on + strandat 834.449 kb on + strandat 834.449 kb on + strandat 834.450 kb on - strandat 834.450 kb on - strandat 834.450 kb on - strandat 834.474 kb on + strandat 834.474 kb on + strandat 834.474 kb on + strandat 834.474 kb on + strandat 834.474 kb on + strandat 834.474 kb on + strandat 834.475 kb on - strandat 834.475 kb on - strandat 834.475 kb on - strandat 834.516 kb on + strandat 834.587 kb on - strandat 834.601 kb on + strandat 834.601 kb on + strandat 834.601 kb on + strandat 834.601 kb on + strandat 834.601 kb on + strandat 834.601 kb on + strandat 834.601 kb on + strandat 834.601 kb on + strandat 834.602 kb on - strandat 834.602 kb on - strandat 834.602 kb on - strandat 834.760 kb on + strand, within LRK53_RS03535at 834.760 kb on + strand, within LRK53_RS03535at 834.760 kb on + strand, within LRK53_RS03535at 834.760 kb on + strand, within LRK53_RS03535at 834.761 kb on - strand, within LRK53_RS03535at 834.761 kb on - strand, within LRK53_RS03535at 834.778 kb on + strand, within LRK53_RS03535at 834.779 kb on - strand, within LRK53_RS03535at 834.779 kb on - strand, within LRK53_RS03535at 834.779 kb on - strand, within LRK53_RS03535at 834.779 kb on - strand, within LRK53_RS03535

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 20AA_mix
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831,174 + LRK53_RS03520 0.13 -0.9
831,174 + LRK53_RS03520 0.13 -0.6
831,175 - LRK53_RS03520 0.13 -0.5
831,175 - LRK53_RS03520 0.13 +0.9
831,283 + LRK53_RS03520 0.25 -0.4
831,283 + LRK53_RS03520 0.25 -0.9
831,283 + LRK53_RS03520 0.25 -1.9
831,283 + LRK53_RS03520 0.25 -1.6
831,283 + LRK53_RS03520 0.25 -1.4
831,283 + LRK53_RS03520 0.25 -1.6
831,283 + LRK53_RS03520 0.25 -0.6
831,283 + LRK53_RS03520 0.25 +0.9
831,283 + LRK53_RS03520 0.25 -1.1
831,283 + LRK53_RS03520 0.25 -0.6
831,283 + LRK53_RS03520 0.25 -0.1
831,283 + LRK53_RS03520 0.25 -1.4
831,283 + LRK53_RS03520 0.25 -1.1
831,283 + LRK53_RS03520 0.25 +0.1
831,283 + LRK53_RS03520 0.25 -1.1
831,284 - LRK53_RS03520 0.25 -2.5
831,284 - LRK53_RS03520 0.25 +1.5
831,284 - LRK53_RS03520 0.25 -1.4
831,284 - LRK53_RS03520 0.25 -0.9
831,284 - LRK53_RS03520 0.25 -0.6
831,284 - LRK53_RS03520 0.25 -0.1
831,284 - LRK53_RS03520 0.25 -1.1
831,284 - LRK53_RS03520 0.25 -0.1
831,284 - LRK53_RS03520 0.25 -0.4
831,284 - LRK53_RS03520 0.25 +0.9
831,284 - LRK53_RS03520 0.25 -1.1
831,284 - LRK53_RS03520 0.25 -1.1
831,284 - LRK53_RS03520 0.25 +0.9
831,284 - LRK53_RS03520 0.25 -2.1
831,284 - LRK53_RS03520 0.25 -2.1
831,284 - LRK53_RS03520 0.25 -1.5
831,284 - LRK53_RS03520 0.25 -0.5
831,284 - LRK53_RS03520 0.25 -1.0
831,284 - LRK53_RS03520 0.25 -0.6
831,284 - LRK53_RS03520 0.25 -0.6
831,284 - LRK53_RS03520 0.25 -0.1
831,284 - LRK53_RS03520 0.25 +0.4
831,297 + LRK53_RS03520 0.26 -0.9
831,297 + LRK53_RS03520 0.26 -0.6
831,298 - LRK53_RS03520 0.26 -0.4
831,298 - LRK53_RS03520 0.26 +0.2
831,298 - LRK53_RS03520 0.26 -1.9
831,298 - LRK53_RS03520 0.26 -0.3
831,463 - LRK53_RS03520 0.44 -1.3
831,463 - LRK53_RS03520 0.44 +0.9
831,645 + LRK53_RS03520 0.63 -0.1
831,645 + LRK53_RS03520 0.63 +0.1
831,646 - LRK53_RS03520 0.63 -2.1
831,646 - LRK53_RS03520 0.63 +0.4
831,748 + LRK53_RS03520 0.73 -1.7
831,748 + LRK53_RS03520 0.73 -0.5
831,748 + LRK53_RS03520 0.73 -0.9
831,748 + LRK53_RS03520 0.73 -1.6
831,748 + LRK53_RS03520 0.73 -0.9
831,748 + LRK53_RS03520 0.73 -1.3
831,748 + LRK53_RS03520 0.73 -3.1
831,748 + LRK53_RS03520 0.73 -1.6
831,748 + LRK53_RS03520 0.73 -0.1
831,748 + LRK53_RS03520 0.73 -0.1
831,749 - LRK53_RS03520 0.74 -2.1
831,749 - LRK53_RS03520 0.74 +1.5
831,749 - LRK53_RS03520 0.74 -0.6
831,749 - LRK53_RS03520 0.74 -0.1
831,749 - LRK53_RS03520 0.74 -0.2
831,749 - LRK53_RS03520 0.74 -1.2
831,749 - LRK53_RS03520 0.74 +0.4
831,749 - LRK53_RS03520 0.74 -0.1
831,749 - LRK53_RS03520 0.74 -1.6
831,749 - LRK53_RS03520 0.74 -1.4
831,749 - LRK53_RS03520 0.74 -0.4
831,819 + LRK53_RS03520 0.81 -0.1
831,820 - LRK53_RS03520 0.81 +0.5
831,820 - LRK53_RS03520 0.81 -0.5
831,820 - LRK53_RS03520 0.81 +0.9
831,822 + LRK53_RS03520 0.81 +2.9
831,822 + LRK53_RS03520 0.81 +1.1
831,822 + LRK53_RS03520 0.81 -1.5
831,823 - LRK53_RS03520 0.81 -0.8
831,823 - LRK53_RS03520 0.81 -1.6
831,823 - LRK53_RS03520 0.81 -1.1
831,849 + LRK53_RS03520 0.84 -1.1
831,850 - LRK53_RS03520 0.84 -0.9
831,850 - LRK53_RS03520 0.84 -0.1
831,881 + LRK53_RS03520 0.87 +0.9
831,881 + LRK53_RS03520 0.87 -1.8
831,881 + LRK53_RS03520 0.87 -0.6
831,882 - LRK53_RS03520 0.88 +0.4
831,882 - LRK53_RS03520 0.88 +0.9
831,969 + -0.3
831,987 + -0.1
831,987 + -0.1
831,987 + -0.5
831,987 + +0.2
831,987 + +0.4
831,987 + +0.9
831,987 + -1.1
831,987 + -2.4
831,987 + +0.9
831,987 + -0.9
831,987 + +0.9
831,988 - -0.9
831,988 - +0.2
831,988 - +0.2
831,988 - -0.4
831,988 - -1.6
831,988 - -3.5
831,988 - -0.5
832,558 + LRK53_RS03525 0.24 -1.4
832,558 + LRK53_RS03525 0.24 -0.1
832,558 + LRK53_RS03525 0.24 -0.8
832,558 + LRK53_RS03525 0.24 -1.9
832,558 + LRK53_RS03525 0.24 -1.4
832,559 - LRK53_RS03525 0.24 +0.4
832,559 - LRK53_RS03525 0.24 -0.1
832,559 - LRK53_RS03525 0.24 -0.6
832,559 - LRK53_RS03525 0.24 -2.2
832,559 - LRK53_RS03525 0.24 +0.9
832,559 - LRK53_RS03525 0.24 -0.4
832,690 + LRK53_RS03525 0.32 -0.9
832,690 + LRK53_RS03525 0.32 -0.1
832,690 + LRK53_RS03525 0.32 -0.1
832,690 + LRK53_RS03525 0.32 -0.2
832,691 - LRK53_RS03525 0.32 -1.0
832,691 - LRK53_RS03525 0.32 -1.1
832,691 - LRK53_RS03525 0.32 +1.9
832,691 - LRK53_RS03525 0.32 -2.4
832,691 - LRK53_RS03525 0.32 +0.6
832,691 - LRK53_RS03525 0.32 -1.2
833,107 + LRK53_RS03525 0.56 -0.5
833,108 - LRK53_RS03525 0.56 -1.6
833,110 + LRK53_RS03525 0.56 -0.4
833,110 + LRK53_RS03525 0.56 -0.9
833,111 - LRK53_RS03525 0.56 -0.6
833,111 - LRK53_RS03525 0.56 -1.1
833,111 - LRK53_RS03525 0.56 -1.1
833,134 + LRK53_RS03525 0.58 -0.1
833,134 + LRK53_RS03525 0.58 -1.1
833,134 + LRK53_RS03525 0.58 -0.3
833,134 + LRK53_RS03525 0.58 +0.4
833,135 - LRK53_RS03525 0.58 -2.1
833,135 - LRK53_RS03525 0.58 +0.1
833,135 - LRK53_RS03525 0.58 -0.6
833,135 - LRK53_RS03525 0.58 -1.4
833,135 - LRK53_RS03525 0.58 -1.5
833,194 + LRK53_RS03525 0.61 -1.3
833,194 + LRK53_RS03525 0.61 -0.3
833,194 + LRK53_RS03525 0.61 -0.1
833,194 + LRK53_RS03525 0.61 -0.1
833,195 - LRK53_RS03525 0.61 -0.8
833,195 - LRK53_RS03525 0.61 -0.4
833,195 - LRK53_RS03525 0.61 -0.2
833,195 - LRK53_RS03525 0.61 -2.1
833,195 - LRK53_RS03525 0.61 +0.5
833,195 - LRK53_RS03525 0.61 -2.4
833,195 - LRK53_RS03525 0.61 +0.9
833,195 - LRK53_RS03525 0.61 -1.6
833,195 - LRK53_RS03525 0.61 -0.6
833,326 + LRK53_RS03525 0.69 -0.6
833,326 + LRK53_RS03525 0.69 -0.1
833,326 + LRK53_RS03525 0.69 -1.6
833,326 + LRK53_RS03525 0.69 -1.1
833,355 + LRK53_RS03525 0.71 -1.4
833,355 + LRK53_RS03525 0.71 -0.4
833,355 + LRK53_RS03525 0.71 -0.9
833,356 - LRK53_RS03525 0.71 +0.5
833,356 - LRK53_RS03525 0.71 -1.1
833,505 - LRK53_RS03525 0.80 -2.1
833,623 + LRK53_RS03525 0.87 -0.8
833,623 + LRK53_RS03525 0.87 -1.5
833,623 + LRK53_RS03525 0.87 -1.2
833,623 + LRK53_RS03525 0.87 -0.1
833,623 + LRK53_RS03525 0.87 -1.1
833,624 - LRK53_RS03525 0.87 -0.9
833,624 - LRK53_RS03525 0.87 -0.9
833,624 - LRK53_RS03525 0.87 +0.7
833,624 - LRK53_RS03525 0.87 -1.1
834,294 + LRK53_RS03530 0.84 -1.4
834,295 - LRK53_RS03530 0.85 -0.8
834,350 + -1.1
834,350 + -1.9
834,350 + -2.6
834,351 - -1.1
834,351 - +0.4
834,351 - -1.3
834,425 + -2.2
834,449 + -1.3
834,449 + -0.5
834,450 - -0.1
834,450 - -2.0
834,450 - +0.9
834,474 + -0.5
834,474 + +1.9
834,474 + -0.6
834,474 + -0.6
834,474 + -0.1
834,474 + -1.4
834,475 - -1.4
834,475 - -0.3
834,475 - +0.5
834,516 + -0.2
834,587 - -2.9
834,601 + -0.3
834,601 + -1.1
834,601 + -0.6
834,601 + -1.4
834,601 + -1.6
834,601 + -0.2
834,601 + -0.1
834,601 + -1.2
834,602 - -1.0
834,602 - -1.8
834,602 - -1.1
834,760 + LRK53_RS03535 0.27 -1.1
834,760 + LRK53_RS03535 0.27 -0.1
834,760 + LRK53_RS03535 0.27 -0.9
834,760 + LRK53_RS03535 0.27 -1.4
834,761 - LRK53_RS03535 0.27 -0.9
834,761 - LRK53_RS03535 0.27 +0.9
834,778 + LRK53_RS03535 0.29 -0.1
834,779 - LRK53_RS03535 0.29 -1.1
834,779 - LRK53_RS03535 0.29 -0.4
834,779 - LRK53_RS03535 0.29 -0.2
834,779 - LRK53_RS03535 0.29 -1.9

Or see this region's nucleotide sequence