Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS17485

Experiment: defined media with 20AA_mix

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	defined media with 20AA_mix
3,834,693	+				+1.4
3,834,694	-				+0.6
3,835,001	+		LRK53_RS17475	0.54	-1.1
3,835,001	+		LRK53_RS17475	0.54	-0.9
3,835,001	+		LRK53_RS17475	0.54	+1.4
3,835,001	+		LRK53_RS17475	0.54	+0.6
3,835,001	+		LRK53_RS17475	0.54	-0.2
3,835,001	+		LRK53_RS17475	0.54	-1.2
3,835,001	+		LRK53_RS17475	0.54	-0.7
3,835,001	+		LRK53_RS17475	0.54	-1.8
3,835,001	+		LRK53_RS17475	0.54	-0.9
3,835,001	+		LRK53_RS17475	0.54	+0.1
3,835,001	+		LRK53_RS17475	0.54	+2.4
3,835,001	+		LRK53_RS17475	0.54	-0.9
3,835,001	+		LRK53_RS17475	0.54	-1.9
3,835,001	+		LRK53_RS17475	0.54	-2.4
3,835,001	+		LRK53_RS17475	0.54	+1.4
3,835,001	+		LRK53_RS17475	0.54	-0.5
3,835,001	+		LRK53_RS17475	0.54	+2.4
3,835,001	+		LRK53_RS17475	0.54	+1.4
3,835,001	+		LRK53_RS17475	0.54	-0.9
3,835,001	+		LRK53_RS17475	0.54	-0.9
3,835,001	+		LRK53_RS17475	0.54	+0.8
3,835,002	-		LRK53_RS17475	0.55	+1.4
3,835,002	-		LRK53_RS17475	0.55	+0.4
3,835,002	-		LRK53_RS17475	0.55	-1.4
3,835,002	-		LRK53_RS17475	0.55	+0.4
3,835,002	-		LRK53_RS17475	0.55	+0.0
3,835,002	-		LRK53_RS17475	0.55	+1.4
3,835,002	-		LRK53_RS17475	0.55	-0.2
3,835,002	-		LRK53_RS17475	0.55	-1.2
3,835,002	-		LRK53_RS17475	0.55	-0.2
3,835,002	-		LRK53_RS17475	0.55	-3.9
3,835,055	+		LRK53_RS17475	0.83	+2.4
3,835,055	+		LRK53_RS17475	0.83	-2.4
3,835,056	-		LRK53_RS17475	0.84	+0.4
3,835,115	+				-0.7
3,835,115	+				+0.4
3,835,115	+				-0.6
3,835,115	+				-1.2
3,835,116	-				+0.4
3,835,116	-				-0.7
3,835,116	-				-0.9
3,835,131	-				-0.5
3,835,161	-				-0.6
3,835,433	+		LRK53_RS17480	0.62	+0.4
3,835,640	+				-0.2
3,835,640	+				+0.4
3,835,640	+				-2.2
3,835,640	+				-0.4
3,835,641	-				+0.0
3,835,641	-				+0.4
3,835,641	-				+0.8
3,835,701	+				-0.2
3,835,701	+				+0.7
3,835,701	+				-0.2
3,835,701	+				+1.2
3,835,701	+				+2.0
3,835,702	-				-0.6
3,835,702	-				+1.4
3,835,740	+		LRK53_RS17485	0.25	+1.4
3,835,788	+		LRK53_RS17485	0.44	-0.9
3,835,788	+		LRK53_RS17485	0.44	+1.9
3,835,788	+		LRK53_RS17485	0.44	+0.4
3,835,788	+		LRK53_RS17485	0.44	-0.2
3,835,788	+		LRK53_RS17485	0.44	-1.4
3,835,788	+		LRK53_RS17485	0.44	-1.8
3,835,788	+		LRK53_RS17485	0.44	-0.6
3,835,788	+		LRK53_RS17485	0.44	+2.0
3,835,788	+		LRK53_RS17485	0.44	-1.4
3,835,788	+		LRK53_RS17485	0.44	-1.4
3,835,789	-		LRK53_RS17485	0.44	-0.1
3,835,789	-		LRK53_RS17485	0.44	-2.6
3,835,789	-		LRK53_RS17485	0.44	-0.3
3,835,789	-		LRK53_RS17485	0.44	-0.2
3,835,789	-		LRK53_RS17485	0.44	-0.2
3,835,789	-		LRK53_RS17485	0.44	+0.4
3,835,789	-		LRK53_RS17485	0.44	-0.4
3,835,789	-		LRK53_RS17485	0.44	-1.7
3,835,789	-		LRK53_RS17485	0.44	-2.0
3,835,789	-		LRK53_RS17485	0.44	-1.3
3,835,789	-		LRK53_RS17485	0.44	-0.4
3,835,789	-		LRK53_RS17485	0.44	-2.6
3,835,791	+		LRK53_RS17485	0.45	-3.8
3,835,791	+		LRK53_RS17485	0.45	-1.8
3,835,791	+		LRK53_RS17485	0.45	-0.8
3,835,791	+		LRK53_RS17485	0.45	-0.2
3,835,792	-		LRK53_RS17485	0.45	+0.1
3,835,911	+				-2.0
3,835,911	+				+0.4
3,835,911	+				-0.2
3,835,911	+				-0.6
3,835,911	+				-2.4
3,835,912	-				-1.9
3,835,912	-				+1.4
3,835,912	-				-1.2
3,835,912	-				-0.2
3,835,912	-				-1.5
3,835,912	-				-3.1
3,835,958	-				-0.6
3,836,090	-		LRK53_RS17490	0.19	-0.9
3,836,209	+		LRK53_RS17490	0.35	-1.9
3,836,210	-		LRK53_RS17490	0.35	-0.6
3,836,210	-		LRK53_RS17490	0.35	+0.8
3,836,213	+		LRK53_RS17490	0.36	-0.2
3,836,214	-		LRK53_RS17490	0.36	-2.8
3,836,214	-		LRK53_RS17490	0.36	+0.3
3,836,329	+		LRK53_RS17490	0.52	-0.2
3,836,329	+		LRK53_RS17490	0.52	-0.0
3,836,329	+		LRK53_RS17490	0.52	+0.4
3,836,329	+		LRK53_RS17490	0.52	-0.9
3,836,329	+		LRK53_RS17490	0.52	+1.2
3,836,329	+		LRK53_RS17490	0.52	+0.1
3,836,329	+		LRK53_RS17490	0.52	-1.2
3,836,329	+		LRK53_RS17490	0.52	-0.8
3,836,329	+		LRK53_RS17490	0.52	-1.4
3,836,329	+		LRK53_RS17490	0.52	-0.2
3,836,329	+		LRK53_RS17490	0.52	+1.4
3,836,329	+		LRK53_RS17490	0.52	-0.9
3,836,330	-		LRK53_RS17490	0.52	+0.6
3,836,330	-		LRK53_RS17490	0.52	+0.4
3,836,330	-		LRK53_RS17490	0.52	-1.4
3,836,330	-		LRK53_RS17490	0.52	+1.4
3,836,330	-		LRK53_RS17490	0.52	+0.8
3,836,330	-		LRK53_RS17490	0.52	-0.4
3,836,330	-		LRK53_RS17490	0.52	+1.4
3,836,330	-		LRK53_RS17490	0.52	-0.2
3,836,330	-		LRK53_RS17490	0.52	+0.4
3,836,330	-		LRK53_RS17490	0.52	-0.6
3,836,330	-		LRK53_RS17490	0.52	+1.4
3,836,330	-		LRK53_RS17490	0.52	+0.4
3,836,363	+		LRK53_RS17490	0.56	+1.4
3,836,441	+		LRK53_RS17490	0.67	-1.4
3,836,441	+		LRK53_RS17490	0.67	-0.6
3,836,441	+		LRK53_RS17490	0.67	+1.0
3,836,441	+		LRK53_RS17490	0.67	+0.7
3,836,441	+		LRK53_RS17490	0.67	-0.9
3,836,441	+		LRK53_RS17490	0.67	+0.2
3,836,441	+		LRK53_RS17490	0.67	-1.2
3,836,442	-		LRK53_RS17490	0.67	+2.4
3,836,442	-		LRK53_RS17490	0.67	+0.4
3,836,442	-		LRK53_RS17490	0.67	+2.0
3,836,504	-		LRK53_RS17490	0.76	+0.7
3,836,578	+		LRK53_RS17490	0.86	+1.4
3,836,578	+		LRK53_RS17490	0.86	+0.8
3,836,579	-		LRK53_RS17490	0.86	-0.2
3,836,621	-				+1.0
3,836,621	-				-0.9
3,836,623	+				-1.2
3,836,623	+				-1.1
3,836,623	+				-1.0
3,836,623	+				-0.3
3,836,623	+				+0.8
3,836,624	-				+1.4
3,836,624	-				+2.4
3,836,624	-				-0.9
3,836,624	-				-1.9
3,836,624	-				-0.4
3,836,624	-				+0.4
3,836,801	+		LRK53_RS17495	0.19	-0.9
3,836,801	+		LRK53_RS17495	0.19	-1.2
3,836,802	-		LRK53_RS17495	0.19	+0.0
3,836,802	-		LRK53_RS17495	0.19	-2.0
3,836,838	-		LRK53_RS17495	0.26	+1.4
3,836,861	+		LRK53_RS17495	0.30	+0.5
3,836,862	-		LRK53_RS17495	0.30	-0.2
3,836,862	-		LRK53_RS17495	0.30	+0.8
3,836,903	+		LRK53_RS17495	0.38	-1.2
3,836,903	+		LRK53_RS17495	0.38	-1.7
3,836,904	-		LRK53_RS17495	0.38	-0.4
3,836,904	-		LRK53_RS17495	0.38	+0.6
3,836,904	-		LRK53_RS17495	0.38	+0.2