Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS12605

Experiment: defined media with 20AA_mix

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS12600 and LRK53_RS12605 are separated by 97 nucleotidesLRK53_RS12605 and LRK53_RS12610 overlap by 29 nucleotidesLRK53_RS12610 and LRK53_RS12615 are separated by 103 nucleotides LRK53_RS12600: LRK53_RS12600 - lipoprotein-releasing ABC transporter permease subunit, at 2,791,228 to 2,792,469 _RS12600 LRK53_RS12605: LRK53_RS12605 - hypothetical protein, at 2,792,567 to 2,793,004 _RS12605 LRK53_RS12610: LRK53_RS12610 - succinate dehydrogenase assembly factor 2, at 2,792,976 to 2,793,224 _RS12610 LRK53_RS12615: LRK53_RS12615 - succinate dehydrogenase iron-sulfur subunit, at 2,793,328 to 2,794,110 _RS12615 Position (kb) 2792 2793 2794Strain fitness (log2 ratio) -1 0 1 2at 2792.690 kb on - strand, within LRK53_RS12605at 2792.718 kb on - strand, within LRK53_RS12605at 2792.748 kb on - strand, within LRK53_RS12605at 2792.748 kb on - strand, within LRK53_RS12605at 2792.974 kb on - strandat 2793.242 kb on - strandat 2793.260 kb on + strandat 2793.260 kb on + strandat 2793.261 kb on - strandat 2793.261 kb on - strandat 2793.261 kb on - strandat 2793.261 kb on - strandat 2793.261 kb on - strandat 2793.261 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 20AA_mix
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2,792,690 - LRK53_RS12605 0.28 -1.6
2,792,718 - LRK53_RS12605 0.34 -1.2
2,792,748 - LRK53_RS12605 0.41 +1.1
2,792,748 - LRK53_RS12605 0.41 -1.5
2,792,974 - -1.7
2,793,242 - +0.1
2,793,260 + +0.3
2,793,260 + +2.1
2,793,261 - -1.0
2,793,261 - +0.7
2,793,261 - -0.7
2,793,261 - +1.1
2,793,261 - +1.1
2,793,261 - +0.1

Or see this region's nucleotide sequence