Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS10320

Experiment: defined media with 20AA_mix

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	defined media with 20AA_mix
2,306,042	+		LRK53_RS10315	0.37	-0.8
2,306,043	-		LRK53_RS10315	0.37	+1.2
2,306,043	-		LRK53_RS10315	0.37	-1.4
2,306,043	-		LRK53_RS10315	0.37	-0.0
2,306,126	+		LRK53_RS10315	0.51	+1.6
2,306,127	-		LRK53_RS10315	0.51	+0.7
2,306,127	-		LRK53_RS10315	0.51	+0.4
2,306,187	+		LRK53_RS10315	0.62	-1.3
2,306,187	+		LRK53_RS10315	0.62	-1.5
2,306,187	+		LRK53_RS10315	0.62	-0.6
2,306,187	+		LRK53_RS10315	0.62	-0.9
2,306,187	+		LRK53_RS10315	0.62	-0.6
2,306,187	+		LRK53_RS10315	0.62	-0.6
2,306,187	+		LRK53_RS10315	0.62	+1.6
2,306,187	+		LRK53_RS10315	0.62	-0.4
2,306,187	+		LRK53_RS10315	0.62	-0.3
2,306,187	+		LRK53_RS10315	0.62	-0.6
2,306,187	+		LRK53_RS10315	0.62	-1.3
2,306,187	+		LRK53_RS10315	0.62	-2.0
2,306,187	+		LRK53_RS10315	0.62	-1.3
2,306,187	+		LRK53_RS10315	0.62	-1.0
2,306,187	+		LRK53_RS10315	0.62	-1.4
2,306,187	+		LRK53_RS10315	0.62	-0.8
2,306,187	+		LRK53_RS10315	0.62	+0.4
2,306,187	+		LRK53_RS10315	0.62	-1.0
2,306,188	-		LRK53_RS10315	0.62	+1.0
2,306,188	-		LRK53_RS10315	0.62	-0.3
2,306,188	-		LRK53_RS10315	0.62	-1.0
2,306,188	-		LRK53_RS10315	0.62	-0.9
2,306,188	-		LRK53_RS10315	0.62	-2.0
2,306,188	-		LRK53_RS10315	0.62	-0.2
2,306,188	-		LRK53_RS10315	0.62	-1.3
2,306,188	-		LRK53_RS10315	0.62	-0.5
2,306,188	-		LRK53_RS10315	0.62	-0.6
2,306,188	-		LRK53_RS10315	0.62	-0.6
2,306,188	-		LRK53_RS10315	0.62	-1.6
2,306,188	-		LRK53_RS10315	0.62	-0.3
2,306,188	-		LRK53_RS10315	0.62	-0.3
2,306,188	-		LRK53_RS10315	0.62	-0.6
2,306,188	-		LRK53_RS10315	0.62	-0.9
2,306,188	-		LRK53_RS10315	0.62	-1.0
2,306,188	-		LRK53_RS10315	0.62	-1.0
2,306,188	-		LRK53_RS10315	0.62	-1.2
2,306,188	-		LRK53_RS10315	0.62	-1.3
2,306,345	+		LRK53_RS10315	0.88	-1.3
2,306,345	+		LRK53_RS10315	0.88	-0.3
2,306,346	-		LRK53_RS10315	0.88	+1.0
2,306,374	-				-1.3
2,306,429	-				-1.8
2,306,429	-				+0.4
2,306,429	-				+0.0
2,306,445	+				-0.0
2,306,446	-				+1.0
2,306,509	+				-2.6
2,306,509	+				+0.2
2,306,510	-				+0.4
2,306,510	-				-2.0
2,306,510	-				-2.2
2,306,510	-				+0.5
2,306,510	-				-0.8
2,306,510	-				-0.1
2,306,587	+				-1.2
2,306,656	+				-1.3
2,306,676	-				-1.7
2,306,770	+				-2.0
2,306,770	+				-0.0
2,306,771	-				-4.1
2,306,771	-				+1.0
2,306,771	-				-0.1
2,306,832	+				-0.0
2,306,832	+				-0.6
2,306,833	-				-0.8
2,307,008	+				-0.6
2,307,008	+				+0.4
2,307,008	+				+1.0
2,307,009	-				-1.4
2,307,050	+				+1.0
2,307,050	+				-0.0
2,307,051	-				-1.6
2,307,106	+				+0.4
2,307,106	+				-1.3
2,307,106	+				-1.0
2,307,107	-				+0.4
2,307,107	-				+0.4
2,307,112	+				-1.1
2,307,112	+				-1.0
2,307,112	+				-0.3
2,307,113	-				-1.1
2,307,113	-				+0.1
2,307,185	+		LRK53_RS10320	0.14	-1.8
2,307,186	-		LRK53_RS10320	0.14	-0.0
2,307,220	+		LRK53_RS10320	0.17	+0.2
2,307,221	-		LRK53_RS10320	0.17	+1.0
2,307,252	-		LRK53_RS10320	0.20	+1.5
2,307,310	+		LRK53_RS10320	0.26	-0.6
2,307,385	-		LRK53_RS10320	0.33	-0.8
2,307,387	+		LRK53_RS10320	0.33	-0.7
2,307,494	+		LRK53_RS10320	0.43	+0.2
2,307,494	+		LRK53_RS10320	0.43	+1.0
2,307,495	-		LRK53_RS10320	0.43	+0.2
2,307,551	-		LRK53_RS10320	0.48	-3.3
2,307,551	-		LRK53_RS10320	0.48	-1.1
2,307,556	+		LRK53_RS10320	0.48	-1.7
2,307,597	+		LRK53_RS10320	0.52	-1.8
2,307,597	+		LRK53_RS10320	0.52	-2.1
2,307,598	-		LRK53_RS10320	0.52	+1.0
2,307,598	-		LRK53_RS10320	0.52	-0.0
2,307,598	-		LRK53_RS10320	0.52	-0.0
2,307,631	+		LRK53_RS10320	0.55	-0.6
2,307,631	+		LRK53_RS10320	0.55	-0.1
2,307,674	+		LRK53_RS10320	0.59	-0.6
2,307,674	+		LRK53_RS10320	0.59	-0.6
2,307,674	+		LRK53_RS10320	0.59	+0.6
2,307,675	-		LRK53_RS10320	0.59	-0.6
2,307,688	-		LRK53_RS10320	0.60	+1.0
2,307,955	+		LRK53_RS10320	0.85	-0.8
2,308,092	+				-1.5
2,308,092	+				-3.2
2,308,093	-				-0.1
2,308,094	+				-2.2
2,308,094	+				+0.3
2,308,095	-				-1.6
2,308,117	+				-0.0
2,308,117	+				-1.6
2,308,117	+				+0.6
2,308,118	-				+1.0
2,308,232	+				-1.6
2,308,237	+				-0.0
2,308,237	+				+0.4
2,308,237	+				-1.1
2,308,237	+				+1.0
2,308,238	-				-1.0
2,308,238	-				+1.6
2,308,239	+				-0.6
2,308,239	+				-0.6
2,308,239	+				-0.6
2,308,239	+				-0.8
2,308,239	+				-0.6
2,308,239	+				-0.3
2,308,239	+				-0.0
2,308,239	+				-3.1
2,308,239	+				+0.2
2,308,239	+				-0.8
2,308,239	+				-1.6
2,308,239	+				-2.3
2,308,239	+				-0.0
2,308,239	+				-0.0
2,308,239	+				-1.8
2,308,239	+				+0.3
2,308,240	-				-1.8
2,308,240	-				-0.9
2,308,240	-				-1.3
2,308,240	-				-0.3
2,308,240	-				-0.3
2,308,240	-				+2.0
2,308,240	-				-0.0
2,308,240	-				-0.3
2,308,240	-				-0.9
2,308,240	-				-1.1
2,308,240	-				-0.7
2,308,240	-				-1.0
2,308,240	-				-1.3
2,308,249	-				+0.2
2,308,249	-				-0.0
2,308,287	+				-1.0
2,308,305	+				-0.5
2,308,305	+				+0.3
2,308,382	+				-1.8
2,308,382	+				-1.6
2,308,382	+				-1.8
2,308,519	+				-0.0
2,308,519	+				-2.0
2,308,519	+				+0.2
2,308,519	+				-0.6
2,308,520	-				-1.2
2,308,520	-				-1.1
2,308,520	-				-0.9
2,308,540	+				-0.6
2,308,540	+				-0.2
2,308,540	+				-0.8
2,308,540	+				+0.4
2,308,540	+				-0.7
2,308,540	+				-1.0
2,308,540	+				-0.0
2,308,540	+				-0.7
2,308,541	-				+0.4
2,308,541	-				-0.9
2,308,541	-				-1.8
2,308,541	-				-0.0
2,308,557	+				-2.5
2,308,557	+				-1.3
2,308,557	+				-2.3
2,308,558	-				-1.6
2,308,558	-				+0.1
2,308,562	+				-1.0
2,308,563	-				+0.4
2,308,563	-				-1.3
2,308,563	-				-1.6
2,308,589	+				+1.0
2,308,589	+				-1.4
2,308,590	-				-1.0
2,308,590	-				+0.2
2,308,633	+				-0.0
2,308,633	+				-1.3
2,308,633	+				-0.0
2,308,633	+				-2.0
2,308,633	+				-0.6
2,308,633	+				+1.6
2,308,633	+				-1.2
2,308,634	-				+2.6
2,308,634	-				-0.6
2,308,634	-				-1.8
2,308,634	-				-0.3
2,308,634	-				-0.8
2,308,634	-				+2.0
2,308,634	-				-0.0
2,308,648	+				-1.8
2,308,648	+				-0.5
2,308,757	+		LRK53_RS10325	0.21	-0.5
2,308,758	-		LRK53_RS10325	0.21	-0.6
2,308,805	+		LRK53_RS10325	0.26	-0.0
2,308,817	+		LRK53_RS10325	0.27	-1.3
2,308,817	+		LRK53_RS10325	0.27	-2.0
2,308,817	+		LRK53_RS10325	0.27	-2.3
2,308,817	+		LRK53_RS10325	0.27	-0.0
2,308,817	+		LRK53_RS10325	0.27	-0.3
2,308,817	+		LRK53_RS10325	0.27	-0.7
2,308,817	+		LRK53_RS10325	0.27	-0.6
2,308,817	+		LRK53_RS10325	0.27	-1.2
2,308,817	+		LRK53_RS10325	0.27	-1.7
2,308,817	+		LRK53_RS10325	0.27	+1.0
2,308,817	+		LRK53_RS10325	0.27	-0.0
2,308,817	+		LRK53_RS10325	0.27	-0.6
2,308,817	+		LRK53_RS10325	0.27	-0.2
2,308,817	+		LRK53_RS10325	0.27	+1.0
2,308,817	+		LRK53_RS10325	0.27	-0.6
2,308,817	+		LRK53_RS10325	0.27	-0.8
2,308,817	+		LRK53_RS10325	0.27	-0.6
2,308,817	+		LRK53_RS10325	0.27	-0.2
2,308,817	+		LRK53_RS10325	0.27	+0.3
2,308,817	+		LRK53_RS10325	0.27	+2.0
2,308,817	+		LRK53_RS10325	0.27	-0.6
2,308,817	+		LRK53_RS10325	0.27	-1.1
2,308,818	-		LRK53_RS10325	0.27	+1.0
2,308,818	-		LRK53_RS10325	0.27	-1.6
2,308,818	-		LRK53_RS10325	0.27	-1.0
2,308,818	-		LRK53_RS10325	0.27	-1.2
2,308,818	-		LRK53_RS10325	0.27	-0.2
2,308,818	-		LRK53_RS10325	0.27	-0.0
2,308,818	-		LRK53_RS10325	0.27	-0.4
2,308,818	-		LRK53_RS10325	0.27	+1.0
2,308,818	-		LRK53_RS10325	0.27	+0.4
2,308,818	-		LRK53_RS10325	0.27	-0.6
2,308,818	-		LRK53_RS10325	0.27	-1.3
2,308,818	-		LRK53_RS10325	0.27	+0.2
2,308,818	-		LRK53_RS10325	0.27	-1.4
2,308,818	-		LRK53_RS10325	0.27	-1.3
2,308,818	-		LRK53_RS10325	0.27	+2.6
2,308,818	-		LRK53_RS10325	0.27	-1.0
2,308,818	-		LRK53_RS10325	0.27	+2.0
2,308,818	-		LRK53_RS10325	0.27	-1.1
2,308,818	-		LRK53_RS10325	0.27	-0.6
2,308,818	-		LRK53_RS10325	0.27	+1.0
2,308,818	-		LRK53_RS10325	0.27	-0.6
2,308,819	+		LRK53_RS10325	0.27	-0.0
2,308,819	+		LRK53_RS10325	0.27	-1.6
2,308,819	+		LRK53_RS10325	0.27	-1.0
2,308,819	+		LRK53_RS10325	0.27	-2.3
2,308,819	+		LRK53_RS10325	0.27	+0.7
2,308,819	+		LRK53_RS10325	0.27	-0.6
2,308,819	+		LRK53_RS10325	0.27	+1.0
2,308,819	+		LRK53_RS10325	0.27	-1.4
2,308,819	+		LRK53_RS10325	0.27	-1.4
2,308,819	+		LRK53_RS10325	0.27	+1.0
2,308,819	+		LRK53_RS10325	0.27	+0.7
2,308,820	-		LRK53_RS10325	0.27	-0.8
2,308,820	-		LRK53_RS10325	0.27	-0.3
2,308,820	-		LRK53_RS10325	0.27	-0.6
2,308,820	-		LRK53_RS10325	0.27	-0.0
2,308,820	-		LRK53_RS10325	0.27	-0.0
2,308,820	-		LRK53_RS10325	0.27	-0.1
2,308,820	-		LRK53_RS10325	0.27	-1.3
2,308,820	-		LRK53_RS10325	0.27	-0.0
2,308,820	-		LRK53_RS10325	0.27	-1.3
2,308,820	-		LRK53_RS10325	0.27	-0.0
2,308,820	-		LRK53_RS10325	0.27	-1.6
2,308,820	-		LRK53_RS10325	0.27	-1.0
2,308,820	-		LRK53_RS10325	0.27	-0.9
2,308,820	-		LRK53_RS10325	0.27	-2.0
2,308,820	-		LRK53_RS10325	0.27	-1.3
2,308,820	-		LRK53_RS10325	0.27	-1.0
2,308,820	-		LRK53_RS10325	0.27	-0.6
2,308,820	-		LRK53_RS10325	0.27	-0.6
2,308,821	+		LRK53_RS10325	0.27	-0.8
2,308,821	+		LRK53_RS10325	0.27	+2.0
2,308,821	+		LRK53_RS10325	0.27	-0.9
2,308,821	+		LRK53_RS10325	0.27	-0.4
2,308,821	+		LRK53_RS10325	0.27	-0.3
2,308,821	+		LRK53_RS10325	0.27	-0.8
2,308,822	-		LRK53_RS10325	0.27	-1.2
2,308,822	-		LRK53_RS10325	0.27	-0.6
2,308,822	-		LRK53_RS10325	0.27	+1.0
2,308,822	-		LRK53_RS10325	0.27	-0.6
2,308,860	+		LRK53_RS10325	0.31	-0.3
2,308,998	+		LRK53_RS10325	0.45	-0.1
2,308,998	+		LRK53_RS10325	0.45	-2.0
2,308,999	-		LRK53_RS10325	0.45	-1.4
2,309,045	+		LRK53_RS10325	0.50	-2.6
2,309,045	+		LRK53_RS10325	0.50	-3.1
2,309,045	+		LRK53_RS10325	0.50	+1.0
2,309,045	+		LRK53_RS10325	0.50	-0.0
2,309,045	+		LRK53_RS10325	0.50	-1.3
2,309,046	-		LRK53_RS10325	0.50	-0.3
2,309,101	+		LRK53_RS10325	0.56	+0.7
2,309,101	+		LRK53_RS10325	0.56	+1.1
2,309,101	+		LRK53_RS10325	0.56	-0.6
2,309,101	+		LRK53_RS10325	0.56	-0.8
2,309,101	+		LRK53_RS10325	0.56	-0.0
2,309,101	+		LRK53_RS10325	0.56	-1.3
2,309,101	+		LRK53_RS10325	0.56	+1.0
2,309,101	+		LRK53_RS10325	0.56	+0.1
2,309,101	+		LRK53_RS10325	0.56	+1.0
2,309,101	+		LRK53_RS10325	0.56	-2.9
2,309,101	+		LRK53_RS10325	0.56	-0.8
2,309,101	+		LRK53_RS10325	0.56	-0.3
2,309,102	-		LRK53_RS10325	0.56	-1.0
2,309,102	-		LRK53_RS10325	0.56	+0.6
2,309,102	-		LRK53_RS10325	0.56	-2.0
2,309,102	-		LRK53_RS10325	0.56	-0.7
2,309,102	-		LRK53_RS10325	0.56	-0.2
2,309,102	-		LRK53_RS10325	0.56	-1.0
2,309,102	-		LRK53_RS10325	0.56	-2.5
2,309,102	-		LRK53_RS10325	0.56	+2.0
2,309,102	-		LRK53_RS10325	0.56	-1.3
2,309,102	-		LRK53_RS10325	0.56	-0.3
2,309,118	-		LRK53_RS10325	0.58	-1.6