Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS09440

Experiment: defined media with 20AA_mix

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	defined media with 20AA_mix
2,116,417	+		LRK53_RS09435	0.65	+0.9
2,116,591	+		LRK53_RS09435	0.82	+0.3
2,116,615	+		LRK53_RS09435	0.85	+0.9
2,116,615	+		LRK53_RS09435	0.85	+0.3
2,116,648	+		LRK53_RS09435	0.88	-0.1
2,116,649	-		LRK53_RS09435	0.88	+0.9
2,116,762	+				-0.4
2,116,763	-				-1.1
2,116,763	-				-1.2
2,116,763	-				-2.1
2,116,848	+				-0.9
2,116,848	+				-0.7
2,116,848	+				-0.7
2,116,848	+				+0.9
2,116,848	+				+0.3
2,116,849	-				-1.7
2,116,849	-				+0.9
2,116,887	+				-1.7
2,116,887	+				-1.6
2,116,887	+				-0.8
2,116,888	-				-0.5
2,116,888	-				-0.1
2,116,888	-				-0.1
2,116,888	-				-0.8
2,116,927	+				-1.4
2,116,940	-				+1.9
2,117,005	-				-1.9
2,117,005	-				+0.9
2,117,083	+				-2.1
2,117,083	+				-2.6
2,117,083	+				-1.9
2,117,083	+				-1.4
2,117,083	+				-0.7
2,117,083	+				+0.9
2,117,083	+				-1.2
2,117,083	+				-0.1
2,117,083	+				-1.3
2,117,084	-				-0.1
2,117,084	-				-0.6
2,117,084	-				+0.2
2,117,084	-				-1.6
2,117,084	-				-0.6
2,117,084	-				-2.0
2,117,176	+		LRK53_RS09440	0.13	-0.7
2,117,176	+		LRK53_RS09440	0.13	-1.1
2,117,176	+		LRK53_RS09440	0.13	-0.3
2,117,177	-		LRK53_RS09440	0.14	+0.9
2,117,260	+		LRK53_RS09440	0.18	-0.9
2,117,260	+		LRK53_RS09440	0.18	-0.1
2,117,260	+		LRK53_RS09440	0.18	-0.6
2,117,261	-		LRK53_RS09440	0.18	-0.6
2,117,261	-		LRK53_RS09440	0.18	-0.4
2,117,261	-		LRK53_RS09440	0.18	-0.6
2,117,261	-		LRK53_RS09440	0.18	+0.5
2,117,261	-		LRK53_RS09440	0.18	-1.1
2,117,261	-		LRK53_RS09440	0.18	+0.9
2,117,441	-		LRK53_RS09440	0.27	-0.2
2,117,441	-		LRK53_RS09440	0.27	-0.1
2,117,441	-		LRK53_RS09440	0.27	-1.6
2,117,441	-		LRK53_RS09440	0.27	-1.4
2,117,557	+		LRK53_RS09440	0.34	-1.1
2,117,558	-		LRK53_RS09440	0.34	-1.6
2,117,558	-		LRK53_RS09440	0.34	+0.9
2,117,558	-		LRK53_RS09440	0.34	-0.1
2,117,558	-		LRK53_RS09440	0.34	+0.9
2,117,629	+		LRK53_RS09440	0.37	-0.6
2,117,629	+		LRK53_RS09440	0.37	-1.1
2,117,629	+		LRK53_RS09440	0.37	-0.1
2,117,629	+		LRK53_RS09440	0.37	-1.4
2,117,629	+		LRK53_RS09440	0.37	-2.6
2,117,630	-		LRK53_RS09440	0.37	-0.3
2,117,630	-		LRK53_RS09440	0.37	-1.1
2,117,630	-		LRK53_RS09440	0.37	-1.1
2,117,630	-		LRK53_RS09440	0.37	-1.9
2,117,638	+		LRK53_RS09440	0.38	-0.5
2,117,638	+		LRK53_RS09440	0.38	-1.1
2,117,638	+		LRK53_RS09440	0.38	-0.1
2,117,638	+		LRK53_RS09440	0.38	-1.0
2,117,638	+		LRK53_RS09440	0.38	+0.9
2,117,638	+		LRK53_RS09440	0.38	+0.5
2,117,638	+		LRK53_RS09440	0.38	-1.1
2,117,638	+		LRK53_RS09440	0.38	-1.9
2,117,638	+		LRK53_RS09440	0.38	-2.1
2,117,638	+		LRK53_RS09440	0.38	-2.1
2,117,639	-		LRK53_RS09440	0.38	-0.1
2,117,639	-		LRK53_RS09440	0.38	-1.5
2,117,639	-		LRK53_RS09440	0.38	+0.9
2,117,639	-		LRK53_RS09440	0.38	-1.6
2,117,639	-		LRK53_RS09440	0.38	-0.3
2,117,639	-		LRK53_RS09440	0.38	+1.9
2,117,639	-		LRK53_RS09440	0.38	+0.2
2,117,639	-		LRK53_RS09440	0.38	-0.9
2,117,639	-		LRK53_RS09440	0.38	-1.6
2,117,639	-		LRK53_RS09440	0.38	-1.1
2,117,639	-		LRK53_RS09440	0.38	-1.6
2,117,754	-		LRK53_RS09440	0.44	-0.5
2,117,754	-		LRK53_RS09440	0.44	-0.8
2,117,754	-		LRK53_RS09440	0.44	+0.3
2,117,754	-		LRK53_RS09440	0.44	-1.6
2,117,754	-		LRK53_RS09440	0.44	+0.9
2,117,794	+		LRK53_RS09440	0.46	-1.8
2,117,794	+		LRK53_RS09440	0.46	-1.6
2,117,794	+		LRK53_RS09440	0.46	-0.8
2,117,794	+		LRK53_RS09440	0.46	-2.5
2,117,794	+		LRK53_RS09440	0.46	-0.6
2,117,794	+		LRK53_RS09440	0.46	-0.1
2,117,795	-		LRK53_RS09440	0.46	+0.5
2,117,795	-		LRK53_RS09440	0.46	-0.7
2,117,795	-		LRK53_RS09440	0.46	-1.1
2,117,795	-		LRK53_RS09440	0.46	-0.1
2,117,795	-		LRK53_RS09440	0.46	-0.9
2,117,795	-		LRK53_RS09440	0.46	-1.2
2,117,795	-		LRK53_RS09440	0.46	-1.5
2,117,803	+		LRK53_RS09440	0.47	-1.4
2,117,803	+		LRK53_RS09440	0.47	+2.9
2,117,803	+		LRK53_RS09440	0.47	+0.9
2,117,803	+		LRK53_RS09440	0.47	-0.4
2,117,803	+		LRK53_RS09440	0.47	-1.1
2,117,803	+		LRK53_RS09440	0.47	-0.8
2,117,804	-		LRK53_RS09440	0.47	-1.6
2,117,804	-		LRK53_RS09440	0.47	-1.1
2,117,839	+		LRK53_RS09440	0.48	+0.9
2,117,896	+		LRK53_RS09440	0.52	-0.6
2,117,897	-		LRK53_RS09440	0.52	+0.4
2,117,897	-		LRK53_RS09440	0.52	-0.9
2,117,974	+		LRK53_RS09440	0.56	+1.5
2,117,974	+		LRK53_RS09440	0.56	-1.1
2,117,974	+		LRK53_RS09440	0.56	+0.9
2,117,974	+		LRK53_RS09440	0.56	-1.4
2,117,974	+		LRK53_RS09440	0.56	+0.9
2,117,974	+		LRK53_RS09440	0.56	+0.7
2,117,974	+		LRK53_RS09440	0.56	-1.1
2,117,974	+		LRK53_RS09440	0.56	-1.4
2,117,975	-		LRK53_RS09440	0.56	-1.9
2,117,975	-		LRK53_RS09440	0.56	-1.1
2,117,975	-		LRK53_RS09440	0.56	-1.4
2,118,079	+		LRK53_RS09440	0.61	-0.6
2,118,079	+		LRK53_RS09440	0.61	+0.2
2,118,079	+		LRK53_RS09440	0.61	-0.6
2,118,079	+		LRK53_RS09440	0.61	-2.6
2,118,079	+		LRK53_RS09440	0.61	-2.1
2,118,079	+		LRK53_RS09440	0.61	-1.4
2,118,079	+		LRK53_RS09440	0.61	-1.1
2,118,079	+		LRK53_RS09440	0.61	-0.1
2,118,079	+		LRK53_RS09440	0.61	-0.6
2,118,079	+		LRK53_RS09440	0.61	-0.6
2,118,079	+		LRK53_RS09440	0.61	-0.8
2,118,079	+		LRK53_RS09440	0.61	+0.5
2,118,079	+		LRK53_RS09440	0.61	-1.1
2,118,079	+		LRK53_RS09440	0.61	-0.1
2,118,079	+		LRK53_RS09440	0.61	-0.1
2,118,079	+		LRK53_RS09440	0.61	-2.2
2,118,080	-		LRK53_RS09440	0.61	-0.1
2,118,080	-		LRK53_RS09440	0.61	+0.9
2,118,080	-		LRK53_RS09440	0.61	+0.4
2,118,080	-		LRK53_RS09440	0.61	-1.1
2,118,080	-		LRK53_RS09440	0.61	-0.1
2,118,080	-		LRK53_RS09440	0.61	-0.1
2,118,080	-		LRK53_RS09440	0.61	-0.6
2,118,080	-		LRK53_RS09440	0.61	+2.5
2,118,080	-		LRK53_RS09440	0.61	+0.4
2,118,080	-		LRK53_RS09440	0.61	-0.4
2,118,080	-		LRK53_RS09440	0.61	+0.9
2,118,316	+		LRK53_RS09440	0.74	-0.1
2,118,316	+		LRK53_RS09440	0.74	-0.2
2,118,316	+		LRK53_RS09440	0.74	-1.3
2,118,316	+		LRK53_RS09440	0.74	+0.9
2,118,316	+		LRK53_RS09440	0.74	-0.4
2,118,317	-		LRK53_RS09440	0.74	-1.0
2,118,317	-		LRK53_RS09440	0.74	-2.1
2,118,317	-		LRK53_RS09440	0.74	-0.1
2,118,317	-		LRK53_RS09440	0.74	-1.4
2,118,317	-		LRK53_RS09440	0.74	-0.3
2,118,317	-		LRK53_RS09440	0.74	+0.2
2,118,317	-		LRK53_RS09440	0.74	-0.6
2,118,317	-		LRK53_RS09440	0.74	-0.1
2,118,343	+		LRK53_RS09440	0.75	-1.9
2,118,343	+		LRK53_RS09440	0.75	-1.9
2,118,343	+		LRK53_RS09440	0.75	-1.8
2,118,343	+		LRK53_RS09440	0.75	-0.1
2,118,343	+		LRK53_RS09440	0.75	-1.1
2,118,343	+		LRK53_RS09440	0.75	+0.9
2,118,343	+		LRK53_RS09440	0.75	-0.6
2,118,343	+		LRK53_RS09440	0.75	-1.5
2,118,344	-		LRK53_RS09440	0.75	+0.2
2,118,344	-		LRK53_RS09440	0.75	-1.6
2,118,344	-		LRK53_RS09440	0.75	+0.9
2,118,344	-		LRK53_RS09440	0.75	-1.1
2,118,344	-		LRK53_RS09440	0.75	-0.1
2,118,344	-		LRK53_RS09440	0.75	-2.1
2,118,344	-		LRK53_RS09440	0.75	-1.4
2,118,344	-		LRK53_RS09440	0.75	-1.6
2,118,344	-		LRK53_RS09440	0.75	-1.4
2,118,344	-		LRK53_RS09440	0.75	-0.1
2,118,344	-		LRK53_RS09440	0.75	-0.4
2,118,344	-		LRK53_RS09440	0.75	-1.1
2,118,344	-		LRK53_RS09440	0.75	-0.9
2,118,344	-		LRK53_RS09440	0.75	+0.4
2,118,382	+		LRK53_RS09440	0.77	-0.6
2,118,382	+		LRK53_RS09440	0.77	-2.3
2,118,649	+				+0.6
2,118,649	+				+1.9
2,118,649	+				-0.6
2,118,649	+				+0.2
2,118,649	+				-0.2
2,118,649	+				-2.0
2,118,649	+				-1.5
2,118,649	+				-0.4
2,118,649	+				+0.3
2,118,650	-				-1.6
2,118,650	-				-1.1
2,118,650	-				-0.5
2,118,650	-				+0.9
2,118,744	+				-2.2
2,118,744	+				+0.9
2,118,820	-				+0.4
2,118,820	-				-1.4
2,119,042	+				-1.4
2,119,042	+				-2.0
2,119,042	+				-0.6
2,119,042	+				-1.5
2,119,042	+				-2.4
2,119,043	-				-1.1
2,119,043	-				+0.9
2,119,043	-				+0.4
2,119,072	-				-0.9
2,119,226	+		LRK53_RS09445	0.18	-0.1
2,119,238	-		LRK53_RS09445	0.19	-1.1
2,119,238	-		LRK53_RS09445	0.19	-0.6
2,119,238	-		LRK53_RS09445	0.19	-0.1
2,119,238	-		LRK53_RS09445	0.19	-0.6
2,119,238	-		LRK53_RS09445	0.19	+0.4
2,119,492	+		LRK53_RS09445	0.35	-1.6
2,119,492	+		LRK53_RS09445	0.35	-2.4
2,119,492	+		LRK53_RS09445	0.35	-2.8
2,119,492	+		LRK53_RS09445	0.35	+0.9
2,119,493	-		LRK53_RS09445	0.35	-0.6
2,119,493	-		LRK53_RS09445	0.35	-1.2
2,119,514	-		LRK53_RS09445	0.36	-1.1
2,119,514	-		LRK53_RS09445	0.36	-0.1
2,119,687	+		LRK53_RS09445	0.47	+0.7
2,119,738	+		LRK53_RS09445	0.51	-0.1
2,119,780	-		LRK53_RS09445	0.53	-0.6
2,119,780	-		LRK53_RS09445	0.53	-0.9
2,119,780	-		LRK53_RS09445	0.53	-0.6