Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS04990

Experiment: defined media with 20AA_mix

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	defined media with 20AA_mix
1,169,937	+		LRK53_RS04985	0.38	-0.6
1,169,937	+		LRK53_RS04985	0.38	+0.6
1,170,027	+		LRK53_RS04985	0.45	-2.1
1,170,027	+		LRK53_RS04985	0.45	-1.2
1,170,027	+		LRK53_RS04985	0.45	-0.5
1,170,027	+		LRK53_RS04985	0.45	+0.1
1,170,027	+		LRK53_RS04985	0.45	-1.6
1,170,027	+		LRK53_RS04985	0.45	-0.9
1,170,027	+		LRK53_RS04985	0.45	+0.4
1,170,027	+		LRK53_RS04985	0.45	+1.1
1,170,027	+		LRK53_RS04985	0.45	-0.9
1,170,028	-		LRK53_RS04985	0.45	+1.1
1,170,028	-		LRK53_RS04985	0.45	-0.9
1,170,087	+		LRK53_RS04985	0.50	+2.1
1,170,088	-		LRK53_RS04985	0.50	-1.9
1,170,088	-		LRK53_RS04985	0.50	-0.5
1,170,103	+		LRK53_RS04985	0.51	-0.9
1,170,103	+		LRK53_RS04985	0.51	-0.2
1,170,103	+		LRK53_RS04985	0.51	-0.8
1,170,103	+		LRK53_RS04985	0.51	+0.1
1,170,103	+		LRK53_RS04985	0.51	-1.1
1,170,103	+		LRK53_RS04985	0.51	-0.2
1,170,104	-		LRK53_RS04985	0.51	-0.7
1,170,104	-		LRK53_RS04985	0.51	-0.9
1,170,120	+		LRK53_RS04985	0.53	+1.1
1,170,120	+		LRK53_RS04985	0.53	-1.7
1,170,120	+		LRK53_RS04985	0.53	+1.1
1,170,120	+		LRK53_RS04985	0.53	-0.1
1,170,120	+		LRK53_RS04985	0.53	+0.5
1,170,120	+		LRK53_RS04985	0.53	-1.7
1,170,120	+		LRK53_RS04985	0.53	-0.9
1,170,121	-		LRK53_RS04985	0.53	+1.1
1,170,121	-		LRK53_RS04985	0.53	+0.1
1,170,121	-		LRK53_RS04985	0.53	-1.5
1,170,121	-		LRK53_RS04985	0.53	-0.7
1,170,121	-		LRK53_RS04985	0.53	+0.8
1,170,121	-		LRK53_RS04985	0.53	+0.1
1,170,121	-		LRK53_RS04985	0.53	-1.2
1,170,121	-		LRK53_RS04985	0.53	-1.9
1,170,121	-		LRK53_RS04985	0.53	-0.5
1,170,171	+		LRK53_RS04985	0.57	+0.4
1,170,171	+		LRK53_RS04985	0.57	-0.6
1,170,171	+		LRK53_RS04985	0.57	+0.4
1,170,171	+		LRK53_RS04985	0.57	+0.1
1,170,171	+		LRK53_RS04985	0.57	+0.1
1,170,171	+		LRK53_RS04985	0.57	-0.5
1,170,171	+		LRK53_RS04985	0.57	+0.1
1,170,171	+		LRK53_RS04985	0.57	-1.2
1,170,171	+		LRK53_RS04985	0.57	-1.7
1,170,172	-		LRK53_RS04985	0.57	-0.5
1,170,172	-		LRK53_RS04985	0.57	-0.9
1,170,172	-		LRK53_RS04985	0.57	-0.9
1,170,172	-		LRK53_RS04985	0.57	-1.5
1,170,172	-		LRK53_RS04985	0.57	+1.1
1,170,172	-		LRK53_RS04985	0.57	-0.5
1,170,172	-		LRK53_RS04985	0.57	-1.9
1,170,172	-		LRK53_RS04985	0.57	-1.3
1,170,172	-		LRK53_RS04985	0.57	-0.2
1,170,172	-		LRK53_RS04985	0.57	-0.7
1,170,175	+		LRK53_RS04985	0.57	-0.5
1,170,175	+		LRK53_RS04985	0.57	-1.1
1,170,175	+		LRK53_RS04985	0.57	-1.2
1,170,175	+		LRK53_RS04985	0.57	-1.7
1,170,175	+		LRK53_RS04985	0.57	-0.4
1,170,175	+		LRK53_RS04985	0.57	-1.2
1,170,175	+		LRK53_RS04985	0.57	-0.7
1,170,175	+		LRK53_RS04985	0.57	-2.5
1,170,176	-		LRK53_RS04985	0.57	-2.2
1,170,176	-		LRK53_RS04985	0.57	-0.5
1,170,176	-		LRK53_RS04985	0.57	+1.1
1,170,176	-		LRK53_RS04985	0.57	+0.7
1,170,309	+		LRK53_RS04985	0.68	-0.3
1,170,309	+		LRK53_RS04985	0.68	-3.0
1,170,309	+		LRK53_RS04985	0.68	-0.5
1,170,309	+		LRK53_RS04985	0.68	-1.5
1,170,309	+		LRK53_RS04985	0.68	-0.1
1,170,309	+		LRK53_RS04985	0.68	-0.5
1,170,309	+		LRK53_RS04985	0.68	+0.5
1,170,309	+		LRK53_RS04985	0.68	-0.2
1,170,309	+		LRK53_RS04985	0.68	-0.5
1,170,309	+		LRK53_RS04985	0.68	-1.2
1,170,309	+		LRK53_RS04985	0.68	-2.2
1,170,309	+		LRK53_RS04985	0.68	+0.1
1,170,309	+		LRK53_RS04985	0.68	-1.9
1,170,310	-		LRK53_RS04985	0.68	+0.4
1,170,310	-		LRK53_RS04985	0.68	+0.4
1,170,310	-		LRK53_RS04985	0.68	-0.8
1,170,310	-		LRK53_RS04985	0.68	+0.4
1,170,310	-		LRK53_RS04985	0.68	-1.2
1,170,310	-		LRK53_RS04985	0.68	-0.6
1,170,310	-		LRK53_RS04985	0.68	+1.7
1,170,310	-		LRK53_RS04985	0.68	-0.5
1,170,310	-		LRK53_RS04985	0.68	+0.1
1,170,437	-		LRK53_RS04985	0.78	+0.7
1,170,477	+		LRK53_RS04985	0.81	+1.1
1,170,477	+		LRK53_RS04985	0.81	+1.1
1,170,478	-		LRK53_RS04985	0.82	-1.0
1,170,570	+		LRK53_RS04985	0.89	-0.5
1,170,570	+		LRK53_RS04985	0.89	-0.5
1,170,570	+		LRK53_RS04985	0.89	+0.1
1,170,570	+		LRK53_RS04985	0.89	-0.2
1,170,570	+		LRK53_RS04985	0.89	+0.1
1,170,570	+		LRK53_RS04985	0.89	-1.1
1,170,570	+		LRK53_RS04985	0.89	+0.1
1,170,571	-		LRK53_RS04985	0.89	-0.5
1,170,571	-		LRK53_RS04985	0.89	-1.5
1,170,703	+				+0.1
1,170,703	+				-0.7
1,170,703	+				-0.9
1,170,703	+				+1.1
1,170,703	+				-0.5
1,170,704	-				+0.6
1,170,704	-				+0.1
1,170,721	+				-1.3
1,170,721	+				-1.2
1,170,722	-				-0.3
1,170,786	+				-1.5
1,170,786	+				-1.5
1,170,786	+				-0.7
1,170,787	-				-0.2
1,170,807	-				-0.9
1,170,807	-				-0.9
1,170,898	+				-0.9
1,170,898	+				-1.0
1,170,898	+				-0.9
1,170,898	+				-0.7
1,170,924	+				+0.1
1,170,925	-				+0.1
1,170,935	+				-2.3
1,170,935	+				+0.1
1,170,935	+				-2.1
1,170,935	+				-1.2
1,170,935	+				-1.2
1,170,935	+				-0.9
1,170,935	+				-1.5
1,170,935	+				-0.5
1,170,935	+				-0.9
1,170,936	-				-0.9
1,170,936	-				-0.5
1,170,936	-				+0.5
1,170,936	-				-1.7
1,170,936	-				-1.2
1,170,936	-				-1.8
1,170,936	-				-1.5
1,170,936	-				-1.2
1,170,951	+				-0.5
1,170,951	+				+1.1
1,170,952	-				-0.3
1,170,952	-				-1.6
1,170,952	-				-0.5
1,170,952	-				-2.6
1,171,005	+				-1.2
1,171,006	-				-1.5
1,171,006	-				-0.8
1,171,059	+				-0.7
1,171,059	+				-0.8
1,171,059	+				-0.5
1,171,059	+				+0.1
1,171,059	+				-0.9
1,171,059	+				+0.1
1,171,059	+				-0.6
1,171,059	+				+1.1
1,171,059	+				+0.5
1,171,059	+				+0.1
1,171,060	-				-0.9
1,171,060	-				+0.5
1,171,060	-				+0.1
1,171,060	-				-1.1
1,171,060	-				-2.8
1,171,060	-				+0.1
1,171,060	-				-0.6
1,171,260	+		LRK53_RS04990	0.24	-1.7
1,171,260	+		LRK53_RS04990	0.24	-3.2
1,171,260	+		LRK53_RS04990	0.24	-1.2
1,171,261	-		LRK53_RS04990	0.24	-0.7
1,171,261	-		LRK53_RS04990	0.24	-3.5
1,171,261	-		LRK53_RS04990	0.24	-2.3
1,171,261	-		LRK53_RS04990	0.24	+2.1
1,171,261	-		LRK53_RS04990	0.24	+0.4
1,171,261	-		LRK53_RS04990	0.24	-2.6
1,171,416	+		LRK53_RS04990	0.35	-0.7
1,171,416	+		LRK53_RS04990	0.35	+0.1
1,171,416	+		LRK53_RS04990	0.35	-1.2
1,171,416	+		LRK53_RS04990	0.35	-2.5
1,171,417	-		LRK53_RS04990	0.36	-1.2
1,171,417	-		LRK53_RS04990	0.36	-0.2
1,171,417	-		LRK53_RS04990	0.36	+0.1
1,171,417	-		LRK53_RS04990	0.36	-2.1
1,171,796	+		LRK53_RS04990	0.63	-2.8
1,171,796	+		LRK53_RS04990	0.63	-1.7
1,171,796	+		LRK53_RS04990	0.63	-0.5
1,171,796	+		LRK53_RS04990	0.63	-0.9
1,171,796	+		LRK53_RS04990	0.63	+2.7
1,171,797	-		LRK53_RS04990	0.63	-0.9
1,171,797	-		LRK53_RS04990	0.63	-1.2
1,171,797	-		LRK53_RS04990	0.63	+1.1
1,171,797	-		LRK53_RS04990	0.63	-0.2
1,171,797	-		LRK53_RS04990	0.63	-0.6
1,171,797	-		LRK53_RS04990	0.63	-0.9
1,171,797	-		LRK53_RS04990	0.63	-0.5
1,171,818	+		LRK53_RS04990	0.64	+0.3
1,171,818	+		LRK53_RS04990	0.64	-1.5
1,171,818	+		LRK53_RS04990	0.64	-1.7
1,171,818	+		LRK53_RS04990	0.64	-1.5
1,171,818	+		LRK53_RS04990	0.64	-2.6
1,171,818	+		LRK53_RS04990	0.64	-2.8
1,171,818	+		LRK53_RS04990	0.64	+0.5
1,171,818	+		LRK53_RS04990	0.64	-1.9
1,171,818	+		LRK53_RS04990	0.64	-0.9
1,171,819	-		LRK53_RS04990	0.65	+0.1
1,171,819	-		LRK53_RS04990	0.65	-0.5
1,171,819	-		LRK53_RS04990	0.65	+0.4
1,171,819	-		LRK53_RS04990	0.65	-2.2
1,171,819	-		LRK53_RS04990	0.65	-1.6
1,171,819	-		LRK53_RS04990	0.65	-3.3
1,171,819	-		LRK53_RS04990	0.65	-2.7
1,171,819	-		LRK53_RS04990	0.65	-2.3
1,171,819	-		LRK53_RS04990	0.65	-3.2
1,171,819	-		LRK53_RS04990	0.65	-0.8
1,171,819	-		LRK53_RS04990	0.65	-1.5
1,172,169	+		LRK53_RS04990	0.90	+0.1
1,172,169	+		LRK53_RS04990	0.90	+1.1
1,172,169	+		LRK53_RS04990	0.90	-3.5
1,172,169	+		LRK53_RS04990	0.90	-0.5
1,172,169	+		LRK53_RS04990	0.90	-1.7
1,172,169	+		LRK53_RS04990	0.90	-0.1
1,172,169	+		LRK53_RS04990	0.90	-3.1
1,172,169	+		LRK53_RS04990	0.90	-1.9
1,172,170	-		LRK53_RS04990	0.90	+0.1
1,172,170	-		LRK53_RS04990	0.90	-1.9
1,172,170	-		LRK53_RS04990	0.90	-0.5
1,172,170	-		LRK53_RS04990	0.90	-2.2
1,172,170	-		LRK53_RS04990	0.90	-1.5
1,172,170	-		LRK53_RS04990	0.90	+1.1
1,172,170	-		LRK53_RS04990	0.90	+1.1
1,172,170	-		LRK53_RS04990	0.90	-1.9
1,172,345	+				+0.1
1,172,558	+				-0.9
1,172,558	+				-1.2
1,172,558	+				+0.5
1,172,558	+				-0.0
1,172,558	+				-0.5
1,172,559	-				+1.1
1,172,559	-				+1.1
1,172,559	-				-0.8
1,172,578	+				-0.9
1,172,578	+				-0.5
1,172,578	+				-0.7
1,172,578	+				-1.9
1,172,578	+				-0.3
1,172,578	+				+0.1
1,172,578	+				-0.5
1,172,578	+				+0.5
1,172,578	+				-0.7
1,172,578	+				-0.5
1,172,579	-				+1.1
1,172,579	-				-1.3
1,172,579	-				+0.1
1,172,579	-				-1.1
1,172,579	-				-0.5
1,172,579	-				-1.0
1,172,579	-				+0.1
1,172,579	-				-2.3
1,172,579	-				+0.5
1,172,579	-				-0.7
1,172,579	-				-1.2
1,172,579	-				-1.2
1,172,628	-				-1.3
1,172,676	-				-0.8
1,172,907	-		LRK53_RS04995	0.18	-0.9
1,173,062	+		LRK53_RS04995	0.25	-1.3
1,173,062	+		LRK53_RS04995	0.25	-0.5
1,173,062	+		LRK53_RS04995	0.25	-1.9
1,173,062	+		LRK53_RS04995	0.25	-2.8
1,173,062	+		LRK53_RS04995	0.25	+1.1
1,173,062	+		LRK53_RS04995	0.25	+0.3
1,173,062	+		LRK53_RS04995	0.25	-0.2
1,173,062	+		LRK53_RS04995	0.25	+0.1
1,173,062	+		LRK53_RS04995	0.25	+1.1
1,173,062	+		LRK53_RS04995	0.25	+0.1
1,173,062	+		LRK53_RS04995	0.25	-0.9
1,173,062	+		LRK53_RS04995	0.25	-1.9
1,173,062	+		LRK53_RS04995	0.25	-0.2
1,173,062	+		LRK53_RS04995	0.25	-0.9
1,173,062	+		LRK53_RS04995	0.25	-0.2
1,173,062	+		LRK53_RS04995	0.25	-1.9
1,173,062	+		LRK53_RS04995	0.25	-1.0
1,173,062	+		LRK53_RS04995	0.25	-1.7
1,173,062	+		LRK53_RS04995	0.25	-0.5
1,173,062	+		LRK53_RS04995	0.25	-0.3
1,173,062	+		LRK53_RS04995	0.25	+1.1
1,173,063	-		LRK53_RS04995	0.25	-0.1
1,173,063	-		LRK53_RS04995	0.25	+0.2
1,173,063	-		LRK53_RS04995	0.25	+0.5
1,173,063	-		LRK53_RS04995	0.25	-0.5
1,173,063	-		LRK53_RS04995	0.25	-0.9
1,173,063	-		LRK53_RS04995	0.25	-0.8
1,173,063	-		LRK53_RS04995	0.25	-1.4
1,173,063	-		LRK53_RS04995	0.25	-0.9
1,173,063	-		LRK53_RS04995	0.25	+0.7
1,173,063	-		LRK53_RS04995	0.25	+0.6
1,173,063	-		LRK53_RS04995	0.25	-0.7
1,173,063	-		LRK53_RS04995	0.25	-1.1
1,173,063	-		LRK53_RS04995	0.25	+0.1
1,173,063	-		LRK53_RS04995	0.25	+0.1
1,173,063	-		LRK53_RS04995	0.25	-1.2
1,173,063	-		LRK53_RS04995	0.25	-0.5
1,173,063	-		LRK53_RS04995	0.25	+0.1
1,173,063	-		LRK53_RS04995	0.25	-0.5
1,173,063	-		LRK53_RS04995	0.25	+0.4
1,173,063	-		LRK53_RS04995	0.25	-0.5
1,173,063	-		LRK53_RS04995	0.25	-0.9
1,173,063	-		LRK53_RS04995	0.25	-0.9
1,173,063	-		LRK53_RS04995	0.25	-1.2
1,173,063	-		LRK53_RS04995	0.25	-1.1
1,173,063	-		LRK53_RS04995	0.25	-0.8
1,173,191	+		LRK53_RS04995	0.31	-1.9
1,173,191	+		LRK53_RS04995	0.31	+2.1
1,173,191	+		LRK53_RS04995	0.31	+0.2
1,173,191	+		LRK53_RS04995	0.31	+2.1
1,173,192	-		LRK53_RS04995	0.31	-0.8
1,173,192	-		LRK53_RS04995	0.31	+0.5
1,173,192	-		LRK53_RS04995	0.31	-0.3
1,173,192	-		LRK53_RS04995	0.31	+0.1