Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS04965

Experiment: defined media with 20AA_mix

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	defined media with 20AA_mix
1,163,291	+		LRK53_RS04960	0.63	-1.7
1,163,292	-		LRK53_RS04960	0.63	-2.1
1,163,292	-		LRK53_RS04960	0.63	-2.6
1,163,292	-		LRK53_RS04960	0.63	-0.7
1,163,292	-		LRK53_RS04960	0.63	-0.9
1,163,292	-		LRK53_RS04960	0.63	-3.0
1,163,297	+		LRK53_RS04960	0.63	-2.3
1,163,298	-		LRK53_RS04960	0.63	-0.5
1,163,298	-		LRK53_RS04960	0.63	-3.1
1,163,298	-		LRK53_RS04960	0.63	-1.7
1,163,486	+		LRK53_RS04960	0.71	+1.1
1,163,486	+		LRK53_RS04960	0.71	-1.3
1,163,486	+		LRK53_RS04960	0.71	-1.9
1,163,486	+		LRK53_RS04960	0.71	-2.1
1,163,487	-		LRK53_RS04960	0.71	-1.9
1,163,487	-		LRK53_RS04960	0.71	+1.1
1,163,487	-		LRK53_RS04960	0.71	+1.1
1,163,487	-		LRK53_RS04960	0.71	+1.1
1,163,510	+		LRK53_RS04960	0.72	+0.1
1,163,510	+		LRK53_RS04960	0.72	-0.2
1,163,510	+		LRK53_RS04960	0.72	-0.8
1,163,511	-		LRK53_RS04960	0.72	-3.6
1,163,511	-		LRK53_RS04960	0.72	-0.2
1,163,519	+		LRK53_RS04960	0.73	-1.0
1,163,519	+		LRK53_RS04960	0.73	+1.1
1,163,519	+		LRK53_RS04960	0.73	-3.0
1,163,519	+		LRK53_RS04960	0.73	-0.8
1,163,519	+		LRK53_RS04960	0.73	+1.1
1,163,519	+		LRK53_RS04960	0.73	+1.1
1,163,520	-		LRK53_RS04960	0.73	-3.7
1,163,664	-		LRK53_RS04960	0.79	-2.1
1,163,699	+		LRK53_RS04960	0.80	-0.2
1,163,699	+		LRK53_RS04960	0.80	-1.5
1,163,699	+		LRK53_RS04960	0.80	+2.1
1,163,700	-		LRK53_RS04960	0.81	-0.8
1,163,700	-		LRK53_RS04960	0.81	+0.1
1,163,700	-		LRK53_RS04960	0.81	-2.4
1,163,705	+		LRK53_RS04960	0.81	-0.5
1,163,706	-		LRK53_RS04960	0.81	-2.6
1,163,706	-		LRK53_RS04960	0.81	-1.5
1,163,706	-		LRK53_RS04960	0.81	-0.5
1,163,706	-		LRK53_RS04960	0.81	+0.1
1,163,711	+		LRK53_RS04960	0.81	+2.1
1,163,711	+		LRK53_RS04960	0.81	+1.1
1,163,712	-		LRK53_RS04960	0.81	-1.5
1,163,712	-		LRK53_RS04960	0.81	+1.1
1,163,768	+		LRK53_RS04960	0.83	-0.5
1,163,768	+		LRK53_RS04960	0.83	-1.5
1,163,768	+		LRK53_RS04960	0.83	+0.1
1,163,769	-		LRK53_RS04960	0.84	+0.1
1,163,769	-		LRK53_RS04960	0.84	+0.1
1,163,828	+		LRK53_RS04960	0.86	+0.1
1,163,828	+		LRK53_RS04960	0.86	-0.2
1,163,828	+		LRK53_RS04960	0.86	+1.1
1,163,828	+		LRK53_RS04960	0.86	-1.3
1,163,828	+		LRK53_RS04960	0.86	+1.1
1,163,828	+		LRK53_RS04960	0.86	-1.5
1,163,829	-		LRK53_RS04960	0.86	+1.1
1,163,829	-		LRK53_RS04960	0.86	-2.1
1,163,829	-		LRK53_RS04960	0.86	-3.0
1,163,829	-		LRK53_RS04960	0.86	-0.2
1,163,829	-		LRK53_RS04960	0.86	-2.5
1,163,829	-		LRK53_RS04960	0.86	+0.1
1,163,852	+		LRK53_RS04960	0.87	+1.1
1,163,935	+				-1.5
1,163,935	+				+0.3
1,163,935	+				-0.5
1,163,935	+				-0.5
1,163,935	+				-0.9
1,163,935	+				+1.1
1,163,936	-				-2.8
1,163,978	+				-0.1
1,163,979	-				-3.0
1,163,979	-				+2.1
1,163,979	-				+0.1
1,164,023	+				+1.1
1,164,023	+				+1.1
1,164,023	+				+1.7
1,164,024	-				-0.9
1,164,024	-				-0.5
1,164,024	-				-2.5
1,164,065	+				-0.8
1,164,065	+				+0.1
1,164,065	+				-1.2
1,164,065	+				+0.4
1,164,065	+				+1.1
1,164,066	-				-1.5
1,164,066	-				-0.9
1,164,066	-				-1.2
1,164,066	-				-0.5
1,164,066	-				-1.5
1,164,307	+				-0.9
1,164,307	+				-1.2
1,164,307	+				-5.6
1,164,307	+				-0.5
1,164,307	+				-0.9
1,164,307	+				-0.5
1,164,307	+				-2.8
1,164,307	+				-3.9
1,164,307	+				-4.0
1,164,307	+				-0.5
1,164,307	+				-1.2
1,164,307	+				-1.2
1,164,307	+				-2.2
1,164,307	+				-2.7
1,164,307	+				-4.8
1,164,307	+				-1.5
1,164,307	+				-0.9
1,164,307	+				-3.2
1,164,307	+				-1.7
1,164,307	+				-1.5
1,164,308	-				-1.5
1,164,308	-				-1.5
1,164,308	-				-2.9
1,164,308	-				-0.9
1,164,308	-				+1.1
1,164,308	-				-0.9
1,164,308	-				-3.1
1,164,308	-				-5.4
1,164,308	-				-2.1
1,164,308	-				-0.5
1,164,308	-				-0.9
1,164,308	-				-0.9
1,164,308	-				-3.1
1,164,308	-				-0.5
1,164,392	-				+0.1
1,164,403	+				+0.1
1,164,403	+				-2.7
1,164,403	+				-8.4
1,164,403	+				-6.4
1,164,403	+				-1.7
1,164,403	+				-1.2
1,164,403	+				-0.9
1,164,403	+				-2.2
1,164,403	+				-3.8
1,164,403	+				-3.4
1,164,403	+				-0.5
1,164,403	+				-0.5
1,164,403	+				-3.1
1,164,403	+				-3.7
1,164,404	-				-1.7
1,164,404	-				-3.3
1,164,404	-				+1.1
1,164,404	-				+0.1
1,164,404	-				-0.5
1,164,404	-				-3.0
1,164,997	+		LRK53_RS04965	0.42	-5.2
1,164,997	+		LRK53_RS04965	0.42	-2.9
1,164,997	+		LRK53_RS04965	0.42	-0.9
1,164,997	+		LRK53_RS04965	0.42	-3.6
1,164,997	+		LRK53_RS04965	0.42	-1.2
1,164,998	-		LRK53_RS04965	0.42	-1.5
1,164,998	-		LRK53_RS04965	0.42	-3.3
1,164,998	-		LRK53_RS04965	0.42	-2.3
1,164,998	-		LRK53_RS04965	0.42	-3.1
1,164,998	-		LRK53_RS04965	0.42	-5.3
1,164,998	-		LRK53_RS04965	0.42	+0.1
1,164,998	-		LRK53_RS04965	0.42	+0.1
1,164,998	-		LRK53_RS04965	0.42	-2.5
1,164,998	-		LRK53_RS04965	0.42	-2.2
1,165,121	-		LRK53_RS04965	0.49	-1.2
1,165,121	-		LRK53_RS04965	0.49	-1.5
1,165,121	-		LRK53_RS04965	0.49	-0.5
1,165,163	+		LRK53_RS04965	0.51	-1.2
1,165,163	+		LRK53_RS04965	0.51	+1.1
1,165,163	+		LRK53_RS04965	0.51	-0.9
1,165,163	+		LRK53_RS04965	0.51	-0.5
1,165,163	+		LRK53_RS04965	0.51	-3.9
1,165,163	+		LRK53_RS04965	0.51	-0.9
1,165,163	+		LRK53_RS04965	0.51	+0.1
1,165,163	+		LRK53_RS04965	0.51	-0.9
1,165,163	+		LRK53_RS04965	0.51	-1.7
1,165,163	+		LRK53_RS04965	0.51	-2.8
1,165,163	+		LRK53_RS04965	0.51	-1.5
1,165,163	+		LRK53_RS04965	0.51	+2.7
1,165,163	+		LRK53_RS04965	0.51	+0.1
1,165,164	-		LRK53_RS04965	0.51	-2.3
1,165,164	-		LRK53_RS04965	0.51	+0.1
1,165,164	-		LRK53_RS04965	0.51	-2.1
1,165,164	-		LRK53_RS04965	0.51	-1.5
1,165,164	-		LRK53_RS04965	0.51	-0.5
1,165,164	-		LRK53_RS04965	0.51	-1.7
1,165,164	-		LRK53_RS04965	0.51	-1.7
1,165,164	-		LRK53_RS04965	0.51	-0.5
1,165,164	-		LRK53_RS04965	0.51	-0.9
1,165,164	-		LRK53_RS04965	0.51	+0.1
1,165,164	-		LRK53_RS04965	0.51	-2.3
1,165,164	-		LRK53_RS04965	0.51	-1.5
1,165,164	-		LRK53_RS04965	0.51	-3.2
1,165,338	+		LRK53_RS04965	0.61	-4.7
1,165,338	+		LRK53_RS04965	0.61	-0.9
1,165,338	+		LRK53_RS04965	0.61	-3.3
1,165,338	+		LRK53_RS04965	0.61	+0.1
1,165,338	+		LRK53_RS04965	0.61	-3.4
1,165,338	+		LRK53_RS04965	0.61	-0.5
1,165,338	+		LRK53_RS04965	0.61	-0.5
1,165,338	+		LRK53_RS04965	0.61	-1.7
1,165,338	+		LRK53_RS04965	0.61	-4.7
1,165,339	-		LRK53_RS04965	0.61	-3.0
1,165,339	-		LRK53_RS04965	0.61	-1.9
1,165,339	-		LRK53_RS04965	0.61	+0.1
1,165,342	+		LRK53_RS04965	0.61	-0.9
1,165,447	+		LRK53_RS04965	0.67	-1.2
1,165,447	+		LRK53_RS04965	0.67	-1.9
1,165,448	-		LRK53_RS04965	0.67	-2.8
1,165,448	-		LRK53_RS04965	0.67	+0.1
1,165,448	-		LRK53_RS04965	0.67	+1.1
1,165,448	-		LRK53_RS04965	0.67	+0.1
1,165,448	-		LRK53_RS04965	0.67	-3.8
1,165,448	-		LRK53_RS04965	0.67	-1.7
1,165,614	+		LRK53_RS04965	0.77	-2.8
1,165,614	+		LRK53_RS04965	0.77	-1.2
1,165,614	+		LRK53_RS04965	0.77	-0.5
1,165,614	+		LRK53_RS04965	0.77	+0.1
1,165,708	+		LRK53_RS04965	0.82	-3.9
1,165,708	+		LRK53_RS04965	0.82	-2.6
1,165,708	+		LRK53_RS04965	0.82	-0.5
1,165,709	-		LRK53_RS04965	0.82	+0.1
1,165,709	-		LRK53_RS04965	0.82	-3.5
1,165,709	-		LRK53_RS04965	0.82	-6.5
1,165,709	-		LRK53_RS04965	0.82	-4.0
1,165,709	-		LRK53_RS04965	0.82	-1.9
1,165,709	-		LRK53_RS04965	0.82	-0.5
1,165,771	+		LRK53_RS04965	0.86	+0.1
1,165,772	-		LRK53_RS04965	0.86	+0.1
1,165,772	-		LRK53_RS04965	0.86	-0.9
1,165,816	+		LRK53_RS04965	0.88	-3.6
1,165,816	+		LRK53_RS04965	0.88	-4.0
1,165,816	+		LRK53_RS04965	0.88	-3.1
1,165,816	+		LRK53_RS04965	0.88	-1.9
1,165,817	-		LRK53_RS04965	0.88	-2.6
1,165,817	-		LRK53_RS04965	0.88	-1.9
1,165,817	-		LRK53_RS04965	0.88	-2.2
1,166,134	+		LRK53_RS04970	0.25	-0.1
1,166,134	+		LRK53_RS04970	0.25	+2.1
1,166,134	+		LRK53_RS04970	0.25	-0.3
1,166,134	+		LRK53_RS04970	0.25	+0.4
1,166,134	+		LRK53_RS04970	0.25	+0.5
1,166,134	+		LRK53_RS04970	0.25	-1.2
1,166,134	+		LRK53_RS04970	0.25	+2.1
1,166,134	+		LRK53_RS04970	0.25	-0.2
1,166,135	-		LRK53_RS04970	0.25	-0.5
1,166,135	-		LRK53_RS04970	0.25	-2.6
1,166,135	-		LRK53_RS04970	0.25	+0.1
1,166,135	-		LRK53_RS04970	0.25	-0.9
1,166,135	-		LRK53_RS04970	0.25	-0.5
1,166,135	-		LRK53_RS04970	0.25	-1.2
1,166,160	+		LRK53_RS04970	0.31	-0.2
1,166,160	+		LRK53_RS04970	0.31	+1.0
1,166,160	+		LRK53_RS04970	0.31	-1.1
1,166,160	+		LRK53_RS04970	0.31	+0.9
1,166,160	+		LRK53_RS04970	0.31	+1.1
1,166,161	-		LRK53_RS04970	0.31	-0.9
1,166,161	-		LRK53_RS04970	0.31	-0.5
1,166,370	+		LRK53_RS04970	0.78	+0.5
1,166,370	+		LRK53_RS04970	0.78	+0.9
1,166,370	+		LRK53_RS04970	0.78	+1.1
1,166,371	-		LRK53_RS04970	0.78	-0.5
1,166,371	-		LRK53_RS04970	0.78	-0.5
1,166,371	-		LRK53_RS04970	0.78	-2.6
1,166,371	-		LRK53_RS04970	0.78	+1.1
1,166,371	-		LRK53_RS04970	0.78	-0.2
1,166,417	+		LRK53_RS04970	0.88	+0.5
1,166,417	+		LRK53_RS04970	0.88	+0.5
1,166,417	+		LRK53_RS04970	0.88	+0.8
1,166,417	+		LRK53_RS04970	0.88	-0.5
1,166,417	+		LRK53_RS04970	0.88	+0.4
1,166,417	+		LRK53_RS04970	0.88	-0.2
1,166,417	+		LRK53_RS04970	0.88	+2.7
1,166,418	-		LRK53_RS04970	0.89	+1.1
1,166,418	-		LRK53_RS04970	0.89	-0.1
1,166,508	+				+1.1
1,166,509	-				-0.9
1,166,655	+				-2.8
1,166,655	+				+0.1
1,166,655	+				-2.5
1,166,655	+				-4.2
1,166,655	+				-2.6
1,166,656	-				-1.5
1,166,656	-				-2.3
1,166,656	-				-1.2
1,166,800	+		LRK53_RS04975	0.16	-1.9
1,166,800	+		LRK53_RS04975	0.16	-2.2
1,166,800	+		LRK53_RS04975	0.16	-0.9
1,166,800	+		LRK53_RS04975	0.16	-2.8
1,166,800	+		LRK53_RS04975	0.16	-0.9
1,166,800	+		LRK53_RS04975	0.16	-2.7
1,166,801	-		LRK53_RS04975	0.16	-0.9
1,166,801	-		LRK53_RS04975	0.16	-2.5
1,166,801	-		LRK53_RS04975	0.16	-1.5
1,166,801	-		LRK53_RS04975	0.16	-2.1
1,166,801	-		LRK53_RS04975	0.16	-0.9
1,166,801	-		LRK53_RS04975	0.16	-1.2
1,166,801	-		LRK53_RS04975	0.16	-2.2
1,166,801	-		LRK53_RS04975	0.16	-1.5
1,166,874	+		LRK53_RS04975	0.21	-1.5
1,166,874	+		LRK53_RS04975	0.21	-2.1
1,166,874	+		LRK53_RS04975	0.21	-2.9
1,166,874	+		LRK53_RS04975	0.21	-1.2
1,166,874	+		LRK53_RS04975	0.21	-2.1
1,166,874	+		LRK53_RS04975	0.21	-1.7
1,166,875	-		LRK53_RS04975	0.21	+0.1
1,166,875	-		LRK53_RS04975	0.21	-2.5
1,166,875	-		LRK53_RS04975	0.21	-0.5
1,166,875	-		LRK53_RS04975	0.21	-0.5
1,166,875	-		LRK53_RS04975	0.21	+0.1