Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS04960

Experiment: defined media with 20AA_mix

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	defined media with 20AA_mix
1,160,869	+		LRK53_RS04955	0.44	-0.3
1,160,869	+		LRK53_RS04955	0.44	+0.1
1,160,869	+		LRK53_RS04955	0.44	-3.3
1,160,869	+		LRK53_RS04955	0.44	-1.2
1,160,869	+		LRK53_RS04955	0.44	+1.1
1,160,870	-		LRK53_RS04955	0.44	+1.1
1,160,870	-		LRK53_RS04955	0.44	-2.8
1,161,034	+		LRK53_RS04955	0.57	-0.5
1,161,034	+		LRK53_RS04955	0.57	-0.9
1,161,034	+		LRK53_RS04955	0.57	-0.5
1,161,034	+		LRK53_RS04955	0.57	+0.1
1,161,034	+		LRK53_RS04955	0.57	-2.6
1,161,034	+		LRK53_RS04955	0.57	-3.1
1,161,034	+		LRK53_RS04955	0.57	-0.6
1,161,034	+		LRK53_RS04955	0.57	-1.5
1,161,034	+		LRK53_RS04955	0.57	-0.5
1,161,034	+		LRK53_RS04955	0.57	+2.1
1,161,034	+		LRK53_RS04955	0.57	+1.1
1,161,034	+		LRK53_RS04955	0.57	-0.7
1,161,035	-		LRK53_RS04955	0.57	-0.5
1,161,035	-		LRK53_RS04955	0.57	-1.7
1,161,035	-		LRK53_RS04955	0.57	+0.5
1,161,035	-		LRK53_RS04955	0.57	-0.9
1,161,035	-		LRK53_RS04955	0.57	+0.1
1,161,035	-		LRK53_RS04955	0.57	-0.2
1,161,035	-		LRK53_RS04955	0.57	-1.2
1,161,035	-		LRK53_RS04955	0.57	-0.9
1,161,035	-		LRK53_RS04955	0.57	-2.0
1,161,035	-		LRK53_RS04955	0.57	-1.2
1,161,035	-		LRK53_RS04955	0.57	-2.0
1,161,070	+		LRK53_RS04955	0.60	+1.1
1,161,070	+		LRK53_RS04955	0.60	+2.1
1,161,071	-		LRK53_RS04955	0.60	-1.7
1,161,071	-		LRK53_RS04955	0.60	-1.2
1,161,071	-		LRK53_RS04955	0.60	-0.5
1,161,071	-		LRK53_RS04955	0.60	-0.3
1,161,071	-		LRK53_RS04955	0.60	-0.6
1,161,071	-		LRK53_RS04955	0.60	+0.5
1,161,071	-		LRK53_RS04955	0.60	+0.1
1,161,071	-		LRK53_RS04955	0.60	-0.5
1,161,154	+		LRK53_RS04955	0.67	-0.9
1,161,154	+		LRK53_RS04955	0.67	-0.5
1,161,154	+		LRK53_RS04955	0.67	-1.9
1,161,155	-		LRK53_RS04955	0.67	+0.1
1,161,244	+		LRK53_RS04955	0.74	+0.1
1,161,244	+		LRK53_RS04955	0.74	+0.4
1,161,244	+		LRK53_RS04955	0.74	-2.4
1,161,244	+		LRK53_RS04955	0.74	-1.5
1,161,244	+		LRK53_RS04955	0.74	-1.5
1,161,245	-		LRK53_RS04955	0.74	-1.9
1,161,245	-		LRK53_RS04955	0.74	-0.5
1,161,245	-		LRK53_RS04955	0.74	+1.1
1,161,245	-		LRK53_RS04955	0.74	+0.1
1,161,317	-		LRK53_RS04955	0.80	-1.4
1,161,317	-		LRK53_RS04955	0.80	-0.5
1,161,397	+		LRK53_RS04955	0.87	+1.0
1,161,397	+		LRK53_RS04955	0.87	-0.9
1,161,397	+		LRK53_RS04955	0.87	+0.1
1,161,398	-		LRK53_RS04955	0.87	-3.2
1,161,398	-		LRK53_RS04955	0.87	-0.5
1,161,398	-		LRK53_RS04955	0.87	-1.1
1,161,398	-		LRK53_RS04955	0.87	+1.1
1,161,398	-		LRK53_RS04955	0.87	-0.5
1,161,445	+				-0.5
1,161,445	+				-0.2
1,161,445	+				+0.4
1,161,445	+				-1.6
1,161,445	+				-0.6
1,161,445	+				-1.0
1,161,445	+				-1.0
1,161,446	-				-1.6
1,161,446	-				+0.1
1,161,446	-				-1.5
1,161,446	-				-0.5
1,161,446	-				+1.1
1,161,487	+				-0.2
1,161,487	+				+0.1
1,161,487	+				-1.2
1,161,487	+				+0.4
1,161,487	+				+1.1
1,161,488	-				+0.1
1,161,488	-				+0.1
1,161,488	-				+0.1
1,161,488	-				+0.8
1,161,488	-				-0.5
1,161,488	-				-0.8
1,161,488	-				-2.2
1,161,488	-				-0.5
1,161,488	-				+0.1
1,161,604	+				-1.1
1,161,604	+				-2.1
1,161,604	+				-1.7
1,161,604	+				-1.3
1,161,604	+				+1.1
1,161,604	+				+0.1
1,161,604	+				+0.5
1,161,605	-				-0.8
1,161,605	-				-0.5
1,161,605	-				-0.5
1,161,605	-				-1.2
1,161,605	-				-2.3
1,161,677	+				+0.1
1,161,678	-				-1.4
1,161,678	-				-1.2
1,161,738	+				+0.1
1,161,792	+				+2.1
1,161,792	+				-1.7
1,161,792	+				-0.9
1,161,793	-				-0.5
1,161,793	-				-0.1
1,162,028	+				-0.9
1,162,028	+				-1.2
1,162,029	-				-0.5
1,162,029	-				+0.1
1,162,053	-				-0.5
1,162,242	-		LRK53_RS04960	0.17	-0.9
1,162,242	-		LRK53_RS04960	0.17	-1.5
1,162,313	+		LRK53_RS04960	0.20	+0.1
1,162,313	+		LRK53_RS04960	0.20	-0.5
1,162,314	-		LRK53_RS04960	0.20	+1.1
1,162,314	-		LRK53_RS04960	0.20	-1.2
1,162,314	-		LRK53_RS04960	0.20	-2.6
1,162,314	-		LRK53_RS04960	0.20	-1.7
1,162,314	-		LRK53_RS04960	0.20	-3.8
1,162,370	+		LRK53_RS04960	0.23	-1.2
1,162,370	+		LRK53_RS04960	0.23	-1.7
1,162,370	+		LRK53_RS04960	0.23	+1.1
1,162,370	+		LRK53_RS04960	0.23	-0.9
1,162,370	+		LRK53_RS04960	0.23	-1.5
1,162,370	+		LRK53_RS04960	0.23	-1.7
1,162,370	+		LRK53_RS04960	0.23	-1.7
1,162,370	+		LRK53_RS04960	0.23	-2.5
1,162,370	+		LRK53_RS04960	0.23	+1.1
1,162,370	+		LRK53_RS04960	0.23	+0.1
1,162,370	+		LRK53_RS04960	0.23	+0.7
1,162,371	-		LRK53_RS04960	0.23	-0.9
1,162,371	-		LRK53_RS04960	0.23	-2.1
1,162,371	-		LRK53_RS04960	0.23	-2.1
1,162,371	-		LRK53_RS04960	0.23	-2.5
1,162,371	-		LRK53_RS04960	0.23	-0.2
1,162,371	-		LRK53_RS04960	0.23	-1.7
1,162,371	-		LRK53_RS04960	0.23	-1.7
1,162,371	-		LRK53_RS04960	0.23	-1.7
1,162,371	-		LRK53_RS04960	0.23	-1.9
1,162,371	-		LRK53_RS04960	0.23	-1.2
1,162,371	-		LRK53_RS04960	0.23	+0.1
1,162,520	+		LRK53_RS04960	0.29	+0.1
1,162,520	+		LRK53_RS04960	0.29	-1.7
1,162,521	-		LRK53_RS04960	0.29	-0.5
1,162,521	-		LRK53_RS04960	0.29	-3.8
1,162,521	-		LRK53_RS04960	0.29	-2.5
1,162,521	-		LRK53_RS04960	0.29	-1.8
1,162,521	-		LRK53_RS04960	0.29	-1.9
1,162,521	-		LRK53_RS04960	0.29	-0.9
1,162,521	-		LRK53_RS04960	0.29	-2.7
1,162,521	-		LRK53_RS04960	0.29	-1.5
1,162,521	-		LRK53_RS04960	0.29	-3.0
1,162,521	-		LRK53_RS04960	0.29	+0.5
1,162,544	+		LRK53_RS04960	0.30	-3.8
1,162,544	+		LRK53_RS04960	0.30	+1.1
1,162,544	+		LRK53_RS04960	0.30	+1.1
1,162,544	+		LRK53_RS04960	0.30	-2.3
1,162,544	+		LRK53_RS04960	0.30	-0.5
1,162,544	+		LRK53_RS04960	0.30	-3.1
1,162,545	+		LRK53_RS04960	0.30	-0.5
1,162,545	-		LRK53_RS04960	0.30	-2.3
1,162,545	-		LRK53_RS04960	0.30	+0.1
1,162,545	-		LRK53_RS04960	0.30	+0.1
1,162,545	-		LRK53_RS04960	0.30	-0.5
1,162,545	-		LRK53_RS04960	0.30	-0.5
1,162,545	-		LRK53_RS04960	0.30	-0.2
1,162,545	-		LRK53_RS04960	0.30	+0.1
1,162,820	+		LRK53_RS04960	0.42	-1.6
1,162,820	+		LRK53_RS04960	0.42	-0.5
1,162,821	-		LRK53_RS04960	0.42	+1.1
1,162,821	-		LRK53_RS04960	0.42	-3.5
1,162,821	-		LRK53_RS04960	0.42	+1.1
1,162,832	+		LRK53_RS04960	0.43	+0.1
1,162,832	+		LRK53_RS04960	0.43	-0.5
1,162,832	+		LRK53_RS04960	0.43	-2.1
1,162,833	-		LRK53_RS04960	0.43	-0.9
1,162,833	-		LRK53_RS04960	0.43	-0.9
1,162,833	-		LRK53_RS04960	0.43	-3.1
1,162,929	-		LRK53_RS04960	0.47	-1.5
1,162,929	-		LRK53_RS04960	0.47	-1.5
1,162,929	-		LRK53_RS04960	0.47	-1.7
1,162,956	-		LRK53_RS04960	0.48	+0.1
1,162,956	-		LRK53_RS04960	0.48	+1.1
1,163,072	+		LRK53_RS04960	0.53	+0.1
1,163,135	+		LRK53_RS04960	0.56	-0.9
1,163,136	-		LRK53_RS04960	0.56	-1.9
1,163,201	+		LRK53_RS04960	0.59	-1.9
1,163,201	+		LRK53_RS04960	0.59	-2.0
1,163,201	+		LRK53_RS04960	0.59	-3.2
1,163,228	+		LRK53_RS04960	0.60	+0.1
1,163,229	-		LRK53_RS04960	0.60	-1.5
1,163,229	-		LRK53_RS04960	0.60	-1.5
1,163,229	-		LRK53_RS04960	0.60	-0.9
1,163,229	-		LRK53_RS04960	0.60	-0.9
1,163,243	+		LRK53_RS04960	0.61	-1.7
1,163,244	-		LRK53_RS04960	0.61	-0.9
1,163,244	-		LRK53_RS04960	0.61	-2.1
1,163,244	-		LRK53_RS04960	0.61	-0.9
1,163,291	+		LRK53_RS04960	0.63	-1.7
1,163,292	-		LRK53_RS04960	0.63	-2.1
1,163,292	-		LRK53_RS04960	0.63	-2.6
1,163,292	-		LRK53_RS04960	0.63	-0.7
1,163,292	-		LRK53_RS04960	0.63	-0.9
1,163,292	-		LRK53_RS04960	0.63	-3.0
1,163,297	+		LRK53_RS04960	0.63	-2.3
1,163,298	-		LRK53_RS04960	0.63	-0.5
1,163,298	-		LRK53_RS04960	0.63	-3.1
1,163,298	-		LRK53_RS04960	0.63	-1.7
1,163,486	+		LRK53_RS04960	0.71	+1.1
1,163,486	+		LRK53_RS04960	0.71	-1.3
1,163,486	+		LRK53_RS04960	0.71	-1.9
1,163,486	+		LRK53_RS04960	0.71	-2.1
1,163,487	-		LRK53_RS04960	0.71	-1.9
1,163,487	-		LRK53_RS04960	0.71	+1.1
1,163,487	-		LRK53_RS04960	0.71	+1.1
1,163,487	-		LRK53_RS04960	0.71	+1.1
1,163,510	+		LRK53_RS04960	0.72	+0.1
1,163,510	+		LRK53_RS04960	0.72	-0.2
1,163,510	+		LRK53_RS04960	0.72	-0.8
1,163,511	-		LRK53_RS04960	0.72	-3.6
1,163,511	-		LRK53_RS04960	0.72	-0.2
1,163,519	+		LRK53_RS04960	0.73	-1.0
1,163,519	+		LRK53_RS04960	0.73	+1.1
1,163,519	+		LRK53_RS04960	0.73	-3.0
1,163,519	+		LRK53_RS04960	0.73	-0.8
1,163,519	+		LRK53_RS04960	0.73	+1.1
1,163,519	+		LRK53_RS04960	0.73	+1.1
1,163,520	-		LRK53_RS04960	0.73	-3.7
1,163,664	-		LRK53_RS04960	0.79	-2.1
1,163,699	+		LRK53_RS04960	0.80	-0.2
1,163,699	+		LRK53_RS04960	0.80	-1.5
1,163,699	+		LRK53_RS04960	0.80	+2.1
1,163,700	-		LRK53_RS04960	0.81	-0.8
1,163,700	-		LRK53_RS04960	0.81	+0.1
1,163,700	-		LRK53_RS04960	0.81	-2.4
1,163,705	+		LRK53_RS04960	0.81	-0.5
1,163,706	-		LRK53_RS04960	0.81	-2.6
1,163,706	-		LRK53_RS04960	0.81	-1.5
1,163,706	-		LRK53_RS04960	0.81	-0.5
1,163,706	-		LRK53_RS04960	0.81	+0.1
1,163,711	+		LRK53_RS04960	0.81	+2.1
1,163,711	+		LRK53_RS04960	0.81	+1.1
1,163,712	-		LRK53_RS04960	0.81	-1.5
1,163,712	-		LRK53_RS04960	0.81	+1.1
1,163,768	+		LRK53_RS04960	0.83	-0.5
1,163,768	+		LRK53_RS04960	0.83	-1.5
1,163,768	+		LRK53_RS04960	0.83	+0.1
1,163,769	-		LRK53_RS04960	0.84	+0.1
1,163,769	-		LRK53_RS04960	0.84	+0.1
1,163,828	+		LRK53_RS04960	0.86	+0.1
1,163,828	+		LRK53_RS04960	0.86	-0.2
1,163,828	+		LRK53_RS04960	0.86	+1.1
1,163,828	+		LRK53_RS04960	0.86	-1.3
1,163,828	+		LRK53_RS04960	0.86	+1.1
1,163,828	+		LRK53_RS04960	0.86	-1.5
1,163,829	-		LRK53_RS04960	0.86	+1.1
1,163,829	-		LRK53_RS04960	0.86	-2.1
1,163,829	-		LRK53_RS04960	0.86	-3.0
1,163,829	-		LRK53_RS04960	0.86	-0.2
1,163,829	-		LRK53_RS04960	0.86	-2.5
1,163,829	-		LRK53_RS04960	0.86	+0.1
1,163,852	+		LRK53_RS04960	0.87	+1.1
1,163,935	+				-1.5
1,163,935	+				+0.3
1,163,935	+				-0.5
1,163,935	+				-0.5
1,163,935	+				-0.9
1,163,935	+				+1.1
1,163,936	-				-2.8
1,163,978	+				-0.1
1,163,979	-				-3.0
1,163,979	-				+2.1
1,163,979	-				+0.1
1,164,023	+				+1.1
1,164,023	+				+1.1
1,164,023	+				+1.7
1,164,024	-				-0.9
1,164,024	-				-0.5
1,164,024	-				-2.5
1,164,065	+				-0.8
1,164,065	+				+0.1
1,164,065	+				-1.2
1,164,065	+				+0.4
1,164,065	+				+1.1
1,164,066	-				-1.5
1,164,066	-				-0.9
1,164,066	-				-1.2
1,164,066	-				-0.5
1,164,066	-				-1.5
1,164,307	+				-0.9
1,164,307	+				-1.2
1,164,307	+				-5.6
1,164,307	+				-0.5
1,164,307	+				-0.9
1,164,307	+				-0.5
1,164,307	+				-2.8
1,164,307	+				-3.9
1,164,307	+				-4.0
1,164,307	+				-0.5
1,164,307	+				-1.2
1,164,307	+				-1.2
1,164,307	+				-2.2
1,164,307	+				-2.7
1,164,307	+				-4.8
1,164,307	+				-1.5
1,164,307	+				-0.9
1,164,307	+				-3.2
1,164,307	+				-1.7
1,164,307	+				-1.5
1,164,308	-				-1.5
1,164,308	-				-1.5
1,164,308	-				-2.9
1,164,308	-				-0.9
1,164,308	-				+1.1
1,164,308	-				-0.9
1,164,308	-				-3.1
1,164,308	-				-5.4
1,164,308	-				-2.1
1,164,308	-				-0.5
1,164,308	-				-0.9
1,164,308	-				-0.9
1,164,308	-				-3.1
1,164,308	-				-0.5
1,164,392	-				+0.1
1,164,403	+				+0.1
1,164,403	+				-2.7
1,164,403	+				-8.4
1,164,403	+				-6.4
1,164,403	+				-1.7
1,164,403	+				-1.2
1,164,403	+				-0.9
1,164,403	+				-2.2
1,164,403	+				-3.8
1,164,403	+				-3.4
1,164,403	+				-0.5
1,164,403	+				-0.5
1,164,403	+				-3.1
1,164,403	+				-3.7
1,164,404	-				-1.7
1,164,404	-				-3.3
1,164,404	-				+1.1
1,164,404	-				+0.1
1,164,404	-				-0.5
1,164,404	-				-3.0
1,164,997	+		LRK53_RS04965	0.42	-5.2
1,164,997	+		LRK53_RS04965	0.42	-2.9
1,164,997	+		LRK53_RS04965	0.42	-0.9
1,164,997	+		LRK53_RS04965	0.42	-3.6
1,164,997	+		LRK53_RS04965	0.42	-1.2
1,164,998	-		LRK53_RS04965	0.42	-1.5
1,164,998	-		LRK53_RS04965	0.42	-3.3
1,164,998	-		LRK53_RS04965	0.42	-2.3
1,164,998	-		LRK53_RS04965	0.42	-3.1
1,164,998	-		LRK53_RS04965	0.42	-5.3
1,164,998	-		LRK53_RS04965	0.42	+0.1
1,164,998	-		LRK53_RS04965	0.42	+0.1
1,164,998	-		LRK53_RS04965	0.42	-2.5
1,164,998	-		LRK53_RS04965	0.42	-2.2
1,165,121	-		LRK53_RS04965	0.49	-1.2
1,165,121	-		LRK53_RS04965	0.49	-1.5
1,165,121	-		LRK53_RS04965	0.49	-0.5