Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS04120

Experiment: defined media with 20AA_mix

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS04110 and LRK53_RS04115 are separated by 70 nucleotidesLRK53_RS04115 and LRK53_RS04120 are separated by 62 nucleotidesLRK53_RS04120 and LRK53_RS04125 are separated by 266 nucleotides LRK53_RS04110: LRK53_RS04110 - LytTR family transcriptional regulator DNA-binding domain-containing protein, at 964,965 to 965,144 _RS04110 LRK53_RS04115: LRK53_RS04115 - hypothetical protein, at 965,215 to 965,949 _RS04115 LRK53_RS04120: LRK53_RS04120 - DUF6491 family protein, at 966,012 to 966,464 _RS04120 LRK53_RS04125: LRK53_RS04125 - ferritin-like domain-containing protein, at 966,731 to 967,552 _RS04125 Position (kb) 966 967Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 965.019 kb on + strand, within LRK53_RS04110at 965.019 kb on + strand, within LRK53_RS04110at 965.019 kb on + strand, within LRK53_RS04110at 965.019 kb on + strand, within LRK53_RS04110at 965.068 kb on + strand, within LRK53_RS04110at 965.068 kb on + strand, within LRK53_RS04110at 965.184 kb on + strandat 965.184 kb on + strandat 965.185 kb on - strandat 965.185 kb on - strandat 965.185 kb on - strandat 965.368 kb on + strand, within LRK53_RS04115at 965.368 kb on + strand, within LRK53_RS04115at 965.368 kb on + strand, within LRK53_RS04115at 965.368 kb on + strand, within LRK53_RS04115at 965.368 kb on + strand, within LRK53_RS04115at 965.368 kb on + strand, within LRK53_RS04115at 965.369 kb on - strand, within LRK53_RS04115at 965.369 kb on - strand, within LRK53_RS04115at 965.497 kb on + strand, within LRK53_RS04115at 965.497 kb on + strand, within LRK53_RS04115at 965.497 kb on + strand, within LRK53_RS04115at 965.497 kb on + strand, within LRK53_RS04115at 965.497 kb on + strand, within LRK53_RS04115at 965.498 kb on - strand, within LRK53_RS04115at 965.498 kb on - strand, within LRK53_RS04115at 965.498 kb on - strand, within LRK53_RS04115at 965.498 kb on - strand, within LRK53_RS04115at 965.542 kb on + strand, within LRK53_RS04115at 965.542 kb on + strand, within LRK53_RS04115at 965.542 kb on + strand, within LRK53_RS04115at 965.542 kb on + strand, within LRK53_RS04115at 965.542 kb on + strand, within LRK53_RS04115at 965.542 kb on + strand, within LRK53_RS04115at 965.542 kb on + strand, within LRK53_RS04115at 965.542 kb on + strand, within LRK53_RS04115at 965.542 kb on + strand, within LRK53_RS04115at 965.542 kb on + strand, within LRK53_RS04115at 965.543 kb on - strand, within LRK53_RS04115at 965.543 kb on - strand, within LRK53_RS04115at 965.543 kb on - strand, within LRK53_RS04115at 965.543 kb on - strand, within LRK53_RS04115at 965.543 kb on - strand, within LRK53_RS04115at 965.543 kb on - strand, within LRK53_RS04115at 965.543 kb on - strand, within LRK53_RS04115at 965.543 kb on - strand, within LRK53_RS04115at 965.543 kb on - strand, within LRK53_RS04115at 965.577 kb on + strand, within LRK53_RS04115at 965.578 kb on - strand, within LRK53_RS04115at 965.671 kb on + strand, within LRK53_RS04115at 965.671 kb on + strand, within LRK53_RS04115at 965.671 kb on + strand, within LRK53_RS04115at 965.672 kb on - strand, within LRK53_RS04115at 965.672 kb on - strand, within LRK53_RS04115at 965.672 kb on - strand, within LRK53_RS04115at 965.672 kb on - strand, within LRK53_RS04115at 965.838 kb on + strand, within LRK53_RS04115at 965.838 kb on + strand, within LRK53_RS04115at 965.838 kb on + strand, within LRK53_RS04115at 965.839 kb on - strand, within LRK53_RS04115at 965.888 kb on - strandat 965.888 kb on - strandat 965.888 kb on - strandat 965.888 kb on - strandat 965.947 kb on + strandat 965.947 kb on + strandat 965.947 kb on + strandat 965.948 kb on - strandat 965.948 kb on - strandat 965.948 kb on - strandat 965.948 kb on - strandat 965.948 kb on - strandat 965.948 kb on - strandat 965.948 kb on - strandat 965.955 kb on + strandat 965.986 kb on + strandat 965.986 kb on + strandat 965.986 kb on + strandat 965.986 kb on + strandat 965.986 kb on + strandat 965.986 kb on + strandat 965.986 kb on + strandat 965.986 kb on + strandat 965.987 kb on - strandat 965.987 kb on - strandat 965.987 kb on - strandat 965.987 kb on - strandat 965.987 kb on - strandat 966.081 kb on + strand, within LRK53_RS04120at 966.081 kb on + strand, within LRK53_RS04120at 966.081 kb on + strand, within LRK53_RS04120at 966.081 kb on + strand, within LRK53_RS04120at 966.082 kb on - strand, within LRK53_RS04120at 966.082 kb on - strand, within LRK53_RS04120at 966.082 kb on - strand, within LRK53_RS04120at 966.114 kb on + strand, within LRK53_RS04120at 966.114 kb on + strand, within LRK53_RS04120at 966.114 kb on + strand, within LRK53_RS04120at 966.114 kb on + strand, within LRK53_RS04120at 966.114 kb on + strand, within LRK53_RS04120at 966.114 kb on + strand, within LRK53_RS04120at 966.114 kb on + strand, within LRK53_RS04120at 966.115 kb on - strand, within LRK53_RS04120at 966.115 kb on - strand, within LRK53_RS04120at 966.115 kb on - strand, within LRK53_RS04120at 966.115 kb on - strand, within LRK53_RS04120at 966.165 kb on + strand, within LRK53_RS04120at 966.165 kb on + strand, within LRK53_RS04120at 966.165 kb on + strand, within LRK53_RS04120at 966.165 kb on + strand, within LRK53_RS04120at 966.165 kb on + strand, within LRK53_RS04120at 966.166 kb on - strand, within LRK53_RS04120at 966.204 kb on + strand, within LRK53_RS04120at 966.204 kb on + strand, within LRK53_RS04120at 966.204 kb on + strand, within LRK53_RS04120at 966.204 kb on + strand, within LRK53_RS04120at 966.204 kb on + strand, within LRK53_RS04120at 966.204 kb on + strand, within LRK53_RS04120at 966.205 kb on - strand, within LRK53_RS04120at 966.205 kb on - strand, within LRK53_RS04120at 966.205 kb on - strand, within LRK53_RS04120at 966.205 kb on - strand, within LRK53_RS04120at 966.205 kb on - strand, within LRK53_RS04120at 966.205 kb on - strand, within LRK53_RS04120at 966.205 kb on - strand, within LRK53_RS04120at 966.205 kb on - strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.206 kb on + strand, within LRK53_RS04120at 966.207 kb on - strand, within LRK53_RS04120at 966.207 kb on - strand, within LRK53_RS04120at 966.207 kb on - strand, within LRK53_RS04120at 966.207 kb on - strand, within LRK53_RS04120at 966.207 kb on - strand, within LRK53_RS04120at 966.207 kb on - strand, within LRK53_RS04120at 966.207 kb on - strand, within LRK53_RS04120at 966.207 kb on - strand, within LRK53_RS04120at 966.207 kb on - strand, within LRK53_RS04120at 966.207 kb on - strand, within LRK53_RS04120at 966.207 kb on - strand, within LRK53_RS04120at 967.047 kb on + strand, within LRK53_RS04125at 967.056 kb on + strand, within LRK53_RS04125at 967.056 kb on + strand, within LRK53_RS04125at 967.062 kb on + strand, within LRK53_RS04125at 967.062 kb on + strand, within LRK53_RS04125at 967.062 kb on + strand, within LRK53_RS04125at 967.062 kb on + strand, within LRK53_RS04125at 967.062 kb on + strand, within LRK53_RS04125at 967.063 kb on - strand, within LRK53_RS04125at 967.063 kb on - strand, within LRK53_RS04125at 967.063 kb on - strand, within LRK53_RS04125at 967.063 kb on - strand, within LRK53_RS04125at 967.063 kb on - strand, within LRK53_RS04125at 967.242 kb on + strand, within LRK53_RS04125at 967.242 kb on + strand, within LRK53_RS04125at 967.243 kb on - strand, within LRK53_RS04125at 967.305 kb on + strand, within LRK53_RS04125at 967.305 kb on + strand, within LRK53_RS04125at 967.305 kb on + strand, within LRK53_RS04125at 967.306 kb on - strand, within LRK53_RS04125at 967.306 kb on - strand, within LRK53_RS04125at 967.306 kb on - strand, within LRK53_RS04125at 967.306 kb on - strand, within LRK53_RS04125at 967.306 kb on - strand, within LRK53_RS04125at 967.306 kb on - strand, within LRK53_RS04125at 967.306 kb on - strand, within LRK53_RS04125at 967.306 kb on - strand, within LRK53_RS04125at 967.413 kb on + strand, within LRK53_RS04125at 967.413 kb on + strand, within LRK53_RS04125at 967.413 kb on + strand, within LRK53_RS04125at 967.413 kb on + strand, within LRK53_RS04125at 967.414 kb on - strand, within LRK53_RS04125

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 20AA_mix
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965,019 + LRK53_RS04110 0.30 -0.9
965,019 + LRK53_RS04110 0.30 +0.5
965,019 + LRK53_RS04110 0.30 +0.8
965,019 + LRK53_RS04110 0.30 -1.1
965,068 + LRK53_RS04110 0.57 -0.7
965,068 + LRK53_RS04110 0.57 -1.7
965,184 + +0.8
965,184 + -0.4
965,185 - +1.4
965,185 - -0.9
965,185 - +0.1
965,368 + LRK53_RS04115 0.21 -0.5
965,368 + LRK53_RS04115 0.21 -0.2
965,368 + LRK53_RS04115 0.21 +1.1
965,368 + LRK53_RS04115 0.21 -1.2
965,368 + LRK53_RS04115 0.21 -0.5
965,368 + LRK53_RS04115 0.21 -1.5
965,369 - LRK53_RS04115 0.21 -0.8
965,369 - LRK53_RS04115 0.21 -0.9
965,497 + LRK53_RS04115 0.38 -1.9
965,497 + LRK53_RS04115 0.38 -0.9
965,497 + LRK53_RS04115 0.38 -0.9
965,497 + LRK53_RS04115 0.38 -1.9
965,497 + LRK53_RS04115 0.38 -1.3
965,498 - LRK53_RS04115 0.39 -0.6
965,498 - LRK53_RS04115 0.39 +1.1
965,498 - LRK53_RS04115 0.39 +1.1
965,498 - LRK53_RS04115 0.39 -0.5
965,542 + LRK53_RS04115 0.44 -0.5
965,542 + LRK53_RS04115 0.44 -1.1
965,542 + LRK53_RS04115 0.44 +0.1
965,542 + LRK53_RS04115 0.44 +0.1
965,542 + LRK53_RS04115 0.44 -1.1
965,542 + LRK53_RS04115 0.44 -0.5
965,542 + LRK53_RS04115 0.44 -0.6
965,542 + LRK53_RS04115 0.44 +0.1
965,542 + LRK53_RS04115 0.44 -1.4
965,542 + LRK53_RS04115 0.44 -1.3
965,543 - LRK53_RS04115 0.45 -1.5
965,543 - LRK53_RS04115 0.45 +0.8
965,543 - LRK53_RS04115 0.45 +0.1
965,543 - LRK53_RS04115 0.45 +0.1
965,543 - LRK53_RS04115 0.45 -1.3
965,543 - LRK53_RS04115 0.45 -0.5
965,543 - LRK53_RS04115 0.45 -0.9
965,543 - LRK53_RS04115 0.45 -1.5
965,543 - LRK53_RS04115 0.45 -1.0
965,577 + LRK53_RS04115 0.49 -1.2
965,578 - LRK53_RS04115 0.49 +0.1
965,671 + LRK53_RS04115 0.62 -0.9
965,671 + LRK53_RS04115 0.62 -1.6
965,671 + LRK53_RS04115 0.62 -2.5
965,672 - LRK53_RS04115 0.62 -0.6
965,672 - LRK53_RS04115 0.62 -0.2
965,672 - LRK53_RS04115 0.62 -0.9
965,672 - LRK53_RS04115 0.62 -0.5
965,838 + LRK53_RS04115 0.85 -0.5
965,838 + LRK53_RS04115 0.85 +0.5
965,838 + LRK53_RS04115 0.85 -0.5
965,839 - LRK53_RS04115 0.85 -1.4
965,888 - +0.3
965,888 - -0.1
965,888 - -1.5
965,888 - -0.8
965,947 + +1.1
965,947 + +1.1
965,947 + -1.0
965,948 - -0.4
965,948 - +0.1
965,948 - -0.9
965,948 - +0.4
965,948 - -0.4
965,948 - -0.5
965,948 - -3.0
965,955 + -0.9
965,986 + +0.1
965,986 + +1.1
965,986 + +1.1
965,986 + +0.3
965,986 + +1.1
965,986 + +2.7
965,986 + -0.9
965,986 + -0.5
965,987 - +1.1
965,987 - -2.1
965,987 - -0.4
965,987 - -0.7
965,987 - -0.3
966,081 + LRK53_RS04120 0.15 +2.1
966,081 + LRK53_RS04120 0.15 +0.1
966,081 + LRK53_RS04120 0.15 -1.5
966,081 + LRK53_RS04120 0.15 -0.5
966,082 - LRK53_RS04120 0.15 -1.8
966,082 - LRK53_RS04120 0.15 +0.5
966,082 - LRK53_RS04120 0.15 +0.5
966,114 + LRK53_RS04120 0.23 -0.0
966,114 + LRK53_RS04120 0.23 +0.1
966,114 + LRK53_RS04120 0.23 -0.9
966,114 + LRK53_RS04120 0.23 -1.7
966,114 + LRK53_RS04120 0.23 +1.1
966,114 + LRK53_RS04120 0.23 -1.1
966,114 + LRK53_RS04120 0.23 -1.5
966,115 - LRK53_RS04120 0.23 -2.2
966,115 - LRK53_RS04120 0.23 -1.7
966,115 - LRK53_RS04120 0.23 -0.2
966,115 - LRK53_RS04120 0.23 +0.8
966,165 + LRK53_RS04120 0.34 +1.1
966,165 + LRK53_RS04120 0.34 -1.5
966,165 + LRK53_RS04120 0.34 -1.1
966,165 + LRK53_RS04120 0.34 -0.5
966,165 + LRK53_RS04120 0.34 +0.4
966,166 - LRK53_RS04120 0.34 -1.0
966,204 + LRK53_RS04120 0.42 -0.2
966,204 + LRK53_RS04120 0.42 +0.1
966,204 + LRK53_RS04120 0.42 -1.5
966,204 + LRK53_RS04120 0.42 +1.3
966,204 + LRK53_RS04120 0.42 +2.1
966,204 + LRK53_RS04120 0.42 -1.1
966,205 - LRK53_RS04120 0.43 -0.6
966,205 - LRK53_RS04120 0.43 -1.5
966,205 - LRK53_RS04120 0.43 +2.1
966,205 - LRK53_RS04120 0.43 +0.2
966,205 - LRK53_RS04120 0.43 +0.4
966,205 - LRK53_RS04120 0.43 +0.7
966,205 - LRK53_RS04120 0.43 -1.6
966,205 - LRK53_RS04120 0.43 -0.5
966,206 + LRK53_RS04120 0.43 +2.1
966,206 + LRK53_RS04120 0.43 +0.5
966,206 + LRK53_RS04120 0.43 -1.2
966,206 + LRK53_RS04120 0.43 +2.7
966,206 + LRK53_RS04120 0.43 -0.5
966,206 + LRK53_RS04120 0.43 +1.5
966,206 + LRK53_RS04120 0.43 +0.4
966,206 + LRK53_RS04120 0.43 -0.9
966,206 + LRK53_RS04120 0.43 -2.1
966,206 + LRK53_RS04120 0.43 +1.1
966,206 + LRK53_RS04120 0.43 -0.2
966,206 + LRK53_RS04120 0.43 +0.4
966,206 + LRK53_RS04120 0.43 -1.0
966,206 + LRK53_RS04120 0.43 +0.1
966,206 + LRK53_RS04120 0.43 -1.2
966,206 + LRK53_RS04120 0.43 +0.1
966,206 + LRK53_RS04120 0.43 +0.5
966,206 + LRK53_RS04120 0.43 -2.2
966,206 + LRK53_RS04120 0.43 +0.1
966,206 + LRK53_RS04120 0.43 +0.1
966,207 - LRK53_RS04120 0.43 -1.7
966,207 - LRK53_RS04120 0.43 +0.1
966,207 - LRK53_RS04120 0.43 +1.7
966,207 - LRK53_RS04120 0.43 -0.7
966,207 - LRK53_RS04120 0.43 +1.1
966,207 - LRK53_RS04120 0.43 +1.1
966,207 - LRK53_RS04120 0.43 +0.1
966,207 - LRK53_RS04120 0.43 -1.5
966,207 - LRK53_RS04120 0.43 -0.4
966,207 - LRK53_RS04120 0.43 +0.1
966,207 - LRK53_RS04120 0.43 +0.1
967,047 + LRK53_RS04125 0.38 +1.1
967,056 + LRK53_RS04125 0.40 +0.5
967,056 + LRK53_RS04125 0.40 -0.9
967,062 + LRK53_RS04125 0.40 -2.1
967,062 + LRK53_RS04125 0.40 +0.5
967,062 + LRK53_RS04125 0.40 +1.7
967,062 + LRK53_RS04125 0.40 -0.2
967,062 + LRK53_RS04125 0.40 -0.9
967,063 - LRK53_RS04125 0.40 +0.1
967,063 - LRK53_RS04125 0.40 -0.5
967,063 - LRK53_RS04125 0.40 +1.1
967,063 - LRK53_RS04125 0.40 +1.6
967,063 - LRK53_RS04125 0.40 +1.1
967,242 + LRK53_RS04125 0.62 +1.1
967,242 + LRK53_RS04125 0.62 -0.5
967,243 - LRK53_RS04125 0.62 +2.1
967,305 + LRK53_RS04125 0.70 -2.1
967,305 + LRK53_RS04125 0.70 +0.8
967,305 + LRK53_RS04125 0.70 -0.4
967,306 - LRK53_RS04125 0.70 +0.4
967,306 - LRK53_RS04125 0.70 +0.1
967,306 - LRK53_RS04125 0.70 -0.5
967,306 - LRK53_RS04125 0.70 -0.5
967,306 - LRK53_RS04125 0.70 -1.5
967,306 - LRK53_RS04125 0.70 -0.9
967,306 - LRK53_RS04125 0.70 +0.1
967,306 - LRK53_RS04125 0.70 +0.1
967,413 + LRK53_RS04125 0.83 -0.8
967,413 + LRK53_RS04125 0.83 +0.1
967,413 + LRK53_RS04125 0.83 +1.5
967,413 + LRK53_RS04125 0.83 -0.5
967,414 - LRK53_RS04125 0.83 +0.1

Or see this region's nucleotide sequence