Experiment: defined media with 20AA_mix
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02780 and LRK53_RS02785 are separated by 63 nucleotides LRK53_RS02785 and LRK53_RS02790 are separated by 63 nucleotides
LRK53_RS02780: LRK53_RS02780 - type II secretion system secretin GspD, at 637,021 to 639,351
_RS02780
LRK53_RS02785: LRK53_RS02785 - ATP-dependent helicase HrpB, at 639,415 to 642,159
_RS02785
LRK53_RS02790: LRK53_RS02790 - EAL domain-containing protein, at 642,223 to 644,922
_RS02790
Position (kb) 639
640
641
642
643 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 638.587 kb on + strand, within LRK53_RS02780 at 638.587 kb on + strand, within LRK53_RS02780 at 638.587 kb on + strand, within LRK53_RS02780 at 638.587 kb on + strand, within LRK53_RS02780 at 638.587 kb on + strand, within LRK53_RS02780 at 638.588 kb on - strand, within LRK53_RS02780 at 638.588 kb on - strand, within LRK53_RS02780 at 638.588 kb on - strand, within LRK53_RS02780 at 638.588 kb on - strand, within LRK53_RS02780 at 638.588 kb on - strand, within LRK53_RS02780 at 638.588 kb on - strand, within LRK53_RS02780 at 638.716 kb on + strand, within LRK53_RS02780 at 638.716 kb on + strand, within LRK53_RS02780 at 638.717 kb on - strand, within LRK53_RS02780 at 638.717 kb on - strand, within LRK53_RS02780 at 638.829 kb on + strand, within LRK53_RS02780 at 638.899 kb on + strand, within LRK53_RS02780 at 638.899 kb on + strand, within LRK53_RS02780 at 638.899 kb on + strand, within LRK53_RS02780 at 638.899 kb on + strand, within LRK53_RS02780 at 638.900 kb on - strand, within LRK53_RS02780 at 638.900 kb on - strand, within LRK53_RS02780 at 638.900 kb on - strand, within LRK53_RS02780 at 638.900 kb on - strand, within LRK53_RS02780 at 638.900 kb on - strand, within LRK53_RS02780 at 638.900 kb on - strand, within LRK53_RS02780 at 638.900 kb on - strand, within LRK53_RS02780 at 638.900 kb on - strand, within LRK53_RS02780 at 638.900 kb on - strand, within LRK53_RS02780 at 638.900 kb on - strand, within LRK53_RS02780 at 638.914 kb on + strand, within LRK53_RS02780 at 638.914 kb on + strand, within LRK53_RS02780 at 638.914 kb on + strand, within LRK53_RS02780 at 638.914 kb on + strand, within LRK53_RS02780 at 638.915 kb on - strand, within LRK53_RS02780 at 638.915 kb on - strand, within LRK53_RS02780 at 638.915 kb on - strand, within LRK53_RS02780 at 638.915 kb on - strand, within LRK53_RS02780 at 638.915 kb on - strand, within LRK53_RS02780 at 638.923 kb on - strand, within LRK53_RS02780 at 638.974 kb on + strand, within LRK53_RS02780 at 638.974 kb on + strand, within LRK53_RS02780 at 638.974 kb on + strand, within LRK53_RS02780 at 638.974 kb on + strand, within LRK53_RS02780 at 638.974 kb on + strand, within LRK53_RS02780 at 638.974 kb on + strand, within LRK53_RS02780 at 638.974 kb on + strand, within LRK53_RS02780 at 638.975 kb on - strand, within LRK53_RS02780 at 638.975 kb on - strand, within LRK53_RS02780 at 638.975 kb on - strand, within LRK53_RS02780 at 638.975 kb on - strand, within LRK53_RS02780 at 638.975 kb on - strand, within LRK53_RS02780 at 638.975 kb on - strand, within LRK53_RS02780 at 639.132 kb on + strand at 639.286 kb on + strand at 639.287 kb on - strand at 639.402 kb on + strand at 639.982 kb on + strand, within LRK53_RS02785 at 639.983 kb on - strand, within LRK53_RS02785 at 639.983 kb on - strand, within LRK53_RS02785 at 640.609 kb on + strand, within LRK53_RS02785 at 641.260 kb on + strand, within LRK53_RS02785 at 641.261 kb on - strand, within LRK53_RS02785 at 641.725 kb on + strand, within LRK53_RS02785 at 641.726 kb on - strand, within LRK53_RS02785 at 641.726 kb on - strand, within LRK53_RS02785 at 641.726 kb on - strand, within LRK53_RS02785 at 641.878 kb on + strand, within LRK53_RS02785 at 641.878 kb on + strand, within LRK53_RS02785 at 641.878 kb on + strand, within LRK53_RS02785 at 641.878 kb on + strand, within LRK53_RS02785 at 641.879 kb on - strand, within LRK53_RS02785 at 641.879 kb on - strand, within LRK53_RS02785 at 642.049 kb on + strand at 642.050 kb on - strand at 642.196 kb on + strand at 642.196 kb on + strand at 642.196 kb on + strand at 642.196 kb on + strand at 642.196 kb on + strand at 642.196 kb on + strand at 642.196 kb on + strand at 642.196 kb on + strand at 642.196 kb on + strand at 642.196 kb on + strand at 642.196 kb on + strand at 642.196 kb on + strand at 642.196 kb on + strand at 642.196 kb on + strand at 642.197 kb on - strand at 642.197 kb on - strand at 642.197 kb on - strand at 642.197 kb on - strand at 642.197 kb on - strand at 642.197 kb on - strand at 642.197 kb on - strand at 642.197 kb on - strand at 642.197 kb on - strand at 642.197 kb on - strand at 642.197 kb on - strand at 642.197 kb on - strand at 642.197 kb on - strand at 642.250 kb on + strand at 642.250 kb on + strand at 642.250 kb on + strand at 642.250 kb on + strand at 642.250 kb on + strand at 642.250 kb on + strand at 642.251 kb on - strand at 642.251 kb on - strand at 642.251 kb on - strand at 642.251 kb on - strand at 642.251 kb on - strand at 642.251 kb on - strand at 642.556 kb on + strand, within LRK53_RS02790 at 642.556 kb on + strand, within LRK53_RS02790 at 642.557 kb on - strand, within LRK53_RS02790 at 642.557 kb on - strand, within LRK53_RS02790 at 642.557 kb on - strand, within LRK53_RS02790 at 642.557 kb on - strand, within LRK53_RS02790 at 642.557 kb on - strand, within LRK53_RS02790 at 642.557 kb on - strand, within LRK53_RS02790 at 642.568 kb on + strand, within LRK53_RS02790 at 642.568 kb on + strand, within LRK53_RS02790 at 642.569 kb on - strand, within LRK53_RS02790 at 642.569 kb on - strand, within LRK53_RS02790 at 642.569 kb on - strand, within LRK53_RS02790 at 642.619 kb on + strand, within LRK53_RS02790 at 642.619 kb on + strand, within LRK53_RS02790 at 642.620 kb on - strand, within LRK53_RS02790 at 642.655 kb on + strand, within LRK53_RS02790 at 642.655 kb on + strand, within LRK53_RS02790 at 642.655 kb on + strand, within LRK53_RS02790 at 642.655 kb on + strand, within LRK53_RS02790 at 642.655 kb on + strand, within LRK53_RS02790 at 642.655 kb on + strand, within LRK53_RS02790 at 642.655 kb on + strand, within LRK53_RS02790 at 642.655 kb on + strand, within LRK53_RS02790 at 642.655 kb on + strand, within LRK53_RS02790 at 642.655 kb on + strand, within LRK53_RS02790 at 642.655 kb on + strand, within LRK53_RS02790 at 642.655 kb on + strand, within LRK53_RS02790 at 642.655 kb on + strand, within LRK53_RS02790 at 642.655 kb on + strand, within LRK53_RS02790 at 642.655 kb on + strand, within LRK53_RS02790 at 642.655 kb on + strand, within LRK53_RS02790 at 642.655 kb on + strand, within LRK53_RS02790 at 642.655 kb on + strand, within LRK53_RS02790 at 642.655 kb on + strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.656 kb on - strand, within LRK53_RS02790 at 642.853 kb on + strand, within LRK53_RS02790 at 642.853 kb on + strand, within LRK53_RS02790 at 642.853 kb on + strand, within LRK53_RS02790 at 642.853 kb on + strand, within LRK53_RS02790 at 642.853 kb on + strand, within LRK53_RS02790 at 642.853 kb on + strand, within LRK53_RS02790 at 642.853 kb on + strand, within LRK53_RS02790 at 642.853 kb on + strand, within LRK53_RS02790 at 642.853 kb on + strand, within LRK53_RS02790 at 642.853 kb on + strand, within LRK53_RS02790 at 642.854 kb on - strand, within LRK53_RS02790 at 642.854 kb on - strand, within LRK53_RS02790 at 642.854 kb on - strand, within LRK53_RS02790 at 642.854 kb on - strand, within LRK53_RS02790 at 643.072 kb on + strand, within LRK53_RS02790 at 643.073 kb on - strand, within LRK53_RS02790 at 643.090 kb on + strand, within LRK53_RS02790
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 20AA_mix remove 638,587 + LRK53_RS02780 0.67 -0.1 638,587 + LRK53_RS02780 0.67 -1.3 638,587 + LRK53_RS02780 0.67 +0.1 638,587 + LRK53_RS02780 0.67 -1.4 638,587 + LRK53_RS02780 0.67 -0.0 638,588 - LRK53_RS02780 0.67 +0.6 638,588 - LRK53_RS02780 0.67 +0.9 638,588 - LRK53_RS02780 0.67 +0.6 638,588 - LRK53_RS02780 0.67 -1.1 638,588 - LRK53_RS02780 0.67 +0.5 638,588 - LRK53_RS02780 0.67 +0.4 638,716 + LRK53_RS02780 0.73 +0.9 638,716 + LRK53_RS02780 0.73 +0.8 638,717 - LRK53_RS02780 0.73 -1.4 638,717 - LRK53_RS02780 0.73 +0.2 638,829 + LRK53_RS02780 0.78 +0.6 638,899 + LRK53_RS02780 0.81 -1.1 638,899 + LRK53_RS02780 0.81 -0.8 638,899 + LRK53_RS02780 0.81 -0.6 638,899 + LRK53_RS02780 0.81 +0.7 638,900 - LRK53_RS02780 0.81 -0.2 638,900 - LRK53_RS02780 0.81 -0.1 638,900 - LRK53_RS02780 0.81 +0.2 638,900 - LRK53_RS02780 0.81 +0.1 638,900 - LRK53_RS02780 0.81 -0.5 638,900 - LRK53_RS02780 0.81 -1.4 638,900 - LRK53_RS02780 0.81 +1.6 638,900 - LRK53_RS02780 0.81 -0.4 638,900 - LRK53_RS02780 0.81 -2.4 638,900 - LRK53_RS02780 0.81 +0.2 638,914 + LRK53_RS02780 0.81 -0.7 638,914 + LRK53_RS02780 0.81 -0.5 638,914 + LRK53_RS02780 0.81 +0.2 638,914 + LRK53_RS02780 0.81 +0.6 638,915 - LRK53_RS02780 0.81 -0.1 638,915 - LRK53_RS02780 0.81 +0.9 638,915 - LRK53_RS02780 0.81 -0.4 638,915 - LRK53_RS02780 0.81 -1.8 638,915 - LRK53_RS02780 0.81 -0.2 638,923 - LRK53_RS02780 0.82 +2.2 638,974 + LRK53_RS02780 0.84 -1.4 638,974 + LRK53_RS02780 0.84 -0.8 638,974 + LRK53_RS02780 0.84 +1.8 638,974 + LRK53_RS02780 0.84 +0.2 638,974 + LRK53_RS02780 0.84 -0.4 638,974 + LRK53_RS02780 0.84 +0.0 638,974 + LRK53_RS02780 0.84 +1.2 638,975 - LRK53_RS02780 0.84 +2.2 638,975 - LRK53_RS02780 0.84 +0.2 638,975 - LRK53_RS02780 0.84 +0.1 638,975 - LRK53_RS02780 0.84 -0.8 638,975 - LRK53_RS02780 0.84 +0.2 638,975 - LRK53_RS02780 0.84 +0.2 639,132 + -0.7 639,286 + +0.4 639,287 - -1.1 639,402 + -0.8 639,982 + LRK53_RS02785 0.21 -1.4 639,983 - LRK53_RS02785 0.21 -0.9 639,983 - LRK53_RS02785 0.21 -1.4 640,609 + LRK53_RS02785 0.43 -1.4 641,260 + LRK53_RS02785 0.67 +0.2 641,261 - LRK53_RS02785 0.67 -1.4 641,725 + LRK53_RS02785 0.84 -1.1 641,726 - LRK53_RS02785 0.84 -0.9 641,726 - LRK53_RS02785 0.84 +0.8 641,726 - LRK53_RS02785 0.84 -0.9 641,878 + LRK53_RS02785 0.90 -0.2 641,878 + LRK53_RS02785 0.90 -1.2 641,878 + LRK53_RS02785 0.90 -0.8 641,878 + LRK53_RS02785 0.90 -0.4 641,879 - LRK53_RS02785 0.90 +1.2 641,879 - LRK53_RS02785 0.90 -2.2 642,049 + -0.2 642,050 - -0.1 642,196 + -0.8 642,196 + -0.8 642,196 + +0.5 642,196 + +0.2 642,196 + -2.5 642,196 + -1.9 642,196 + +1.2 642,196 + +1.2 642,196 + -0.2 642,196 + -2.2 642,196 + +2.2 642,196 + -0.4 642,196 + -0.4 642,196 + +0.2 642,197 - +0.2 642,197 - +0.2 642,197 - -0.4 642,197 - -0.3 642,197 - -1.9 642,197 - -2.2 642,197 - -1.8 642,197 - +2.2 642,197 - -1.0 642,197 - -0.8 642,197 - +0.2 642,197 - -0.8 642,197 - -0.8 642,250 + -1.4 642,250 + +1.2 642,250 + -2.1 642,250 + -0.4 642,250 + -0.4 642,250 + -1.6 642,251 - +1.2 642,251 - +0.5 642,251 - -0.4 642,251 - -0.5 642,251 - +0.5 642,251 - -1.4 642,556 + LRK53_RS02790 0.12 -0.4 642,556 + LRK53_RS02790 0.12 -1.8 642,557 - LRK53_RS02790 0.12 +0.2 642,557 - LRK53_RS02790 0.12 +0.2 642,557 - LRK53_RS02790 0.12 -0.9 642,557 - LRK53_RS02790 0.12 +0.2 642,557 - LRK53_RS02790 0.12 -1.6 642,557 - LRK53_RS02790 0.12 +1.2 642,568 + LRK53_RS02790 0.13 +1.5 642,568 + LRK53_RS02790 0.13 +0.2 642,569 - LRK53_RS02790 0.13 -0.3 642,569 - LRK53_RS02790 0.13 +0.2 642,569 - LRK53_RS02790 0.13 -0.0 642,619 + LRK53_RS02790 0.15 +1.2 642,619 + LRK53_RS02790 0.15 +1.2 642,620 - LRK53_RS02790 0.15 -1.4 642,655 + LRK53_RS02790 0.16 -1.6 642,655 + LRK53_RS02790 0.16 -0.1 642,655 + LRK53_RS02790 0.16 +0.2 642,655 + LRK53_RS02790 0.16 +0.8 642,655 + LRK53_RS02790 0.16 +0.2 642,655 + LRK53_RS02790 0.16 -0.4 642,655 + LRK53_RS02790 0.16 +0.2 642,655 + LRK53_RS02790 0.16 -0.8 642,655 + LRK53_RS02790 0.16 -1.8 642,655 + LRK53_RS02790 0.16 -2.1 642,655 + LRK53_RS02790 0.16 +1.2 642,655 + LRK53_RS02790 0.16 -0.8 642,655 + LRK53_RS02790 0.16 +0.2 642,655 + LRK53_RS02790 0.16 +0.2 642,655 + LRK53_RS02790 0.16 -0.1 642,655 + LRK53_RS02790 0.16 -1.1 642,655 + LRK53_RS02790 0.16 +2.2 642,655 + LRK53_RS02790 0.16 -0.7 642,655 + LRK53_RS02790 0.16 -1.9 642,656 - LRK53_RS02790 0.16 +1.2 642,656 - LRK53_RS02790 0.16 +1.8 642,656 - LRK53_RS02790 0.16 -0.8 642,656 - LRK53_RS02790 0.16 +0.2 642,656 - LRK53_RS02790 0.16 +0.2 642,656 - LRK53_RS02790 0.16 -1.5 642,656 - LRK53_RS02790 0.16 -0.4 642,656 - LRK53_RS02790 0.16 -0.8 642,656 - LRK53_RS02790 0.16 +1.2 642,656 - LRK53_RS02790 0.16 +1.2 642,656 - LRK53_RS02790 0.16 -0.0 642,656 - LRK53_RS02790 0.16 +2.8 642,656 - LRK53_RS02790 0.16 +0.2 642,656 - LRK53_RS02790 0.16 +0.2 642,656 - LRK53_RS02790 0.16 -1.1 642,656 - LRK53_RS02790 0.16 -1.9 642,656 - LRK53_RS02790 0.16 -0.3 642,656 - LRK53_RS02790 0.16 -0.6 642,656 - LRK53_RS02790 0.16 +0.4 642,656 - LRK53_RS02790 0.16 +1.2 642,656 - LRK53_RS02790 0.16 +1.2 642,656 - LRK53_RS02790 0.16 -1.5 642,656 - LRK53_RS02790 0.16 -1.1 642,656 - LRK53_RS02790 0.16 +0.2 642,656 - LRK53_RS02790 0.16 +2.2 642,656 - LRK53_RS02790 0.16 +0.2 642,656 - LRK53_RS02790 0.16 -0.1 642,656 - LRK53_RS02790 0.16 +0.2 642,656 - LRK53_RS02790 0.16 -0.8 642,853 + LRK53_RS02790 0.23 -1.6 642,853 + LRK53_RS02790 0.23 -0.8 642,853 + LRK53_RS02790 0.23 -0.4 642,853 + LRK53_RS02790 0.23 -1.1 642,853 + LRK53_RS02790 0.23 +0.8 642,853 + LRK53_RS02790 0.23 +1.2 642,853 + LRK53_RS02790 0.23 -1.7 642,853 + LRK53_RS02790 0.23 -1.1 642,853 + LRK53_RS02790 0.23 -0.8 642,853 + LRK53_RS02790 0.23 -1.8 642,854 - LRK53_RS02790 0.23 +0.5 642,854 - LRK53_RS02790 0.23 +1.2 642,854 - LRK53_RS02790 0.23 -0.0 642,854 - LRK53_RS02790 0.23 +0.2 643,072 + LRK53_RS02790 0.31 -1.9 643,073 - LRK53_RS02790 0.31 +1.2 643,090 + LRK53_RS02790 0.32 -1.2
Or see this region's nucleotide sequence