Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00675

Experiment: defined media with 20AA_mix

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS00665 and LRK53_RS00670 are separated by 130 nucleotidesLRK53_RS00670 and LRK53_RS00675 are separated by 111 nucleotidesLRK53_RS00675 and LRK53_RS00680 are separated by 347 nucleotides LRK53_RS00665: LRK53_RS00665 - phosphogluconate dehydratase, at 149,917 to 151,734 _RS00665 LRK53_RS00670: LRK53_RS00670 - 6-phosphogluconolactonase, at 151,865 to 152,578 _RS00670 LRK53_RS00675: LRK53_RS00675 - glucose-6-phosphate dehydrogenase, at 152,690 to 154,153 _RS00675 LRK53_RS00680: LRK53_RS00680 - GntR family transcriptional regulator, at 154,501 to 155,253 _RS00680 Position (kb) 152 153 154 155Strain fitness (log2 ratio) -2 -1 0 1 2 3at 151.753 kb on - strandat 151.753 kb on - strandat 151.753 kb on - strandat 151.753 kb on - strandat 151.753 kb on - strandat 151.753 kb on - strandat 151.753 kb on - strandat 151.862 kb on + strandat 151.862 kb on + strandat 151.862 kb on + strandat 151.862 kb on + strandat 151.863 kb on - strandat 151.863 kb on - strandat 151.863 kb on - strandat 152.691 kb on + strandat 152.692 kb on - strandat 152.692 kb on - strandat 154.228 kb on + strandat 154.263 kb on + strandat 154.263 kb on + strandat 154.264 kb on - strandat 154.264 kb on - strandat 154.264 kb on - strandat 154.264 kb on - strandat 154.358 kb on - strandat 154.454 kb on + strandat 154.455 kb on - strandat 154.490 kb on - strandat 154.570 kb on + strandat 154.570 kb on + strandat 154.570 kb on + strandat 154.570 kb on + strandat 154.570 kb on + strandat 154.570 kb on + strandat 154.571 kb on - strandat 154.571 kb on - strandat 154.571 kb on - strandat 154.571 kb on - strandat 154.571 kb on - strandat 154.571 kb on - strandat 154.571 kb on - strandat 154.571 kb on - strandat 154.571 kb on - strandat 154.571 kb on - strandat 154.939 kb on + strand, within LRK53_RS00680at 155.026 kb on + strand, within LRK53_RS00680at 155.026 kb on + strand, within LRK53_RS00680at 155.026 kb on + strand, within LRK53_RS00680at 155.027 kb on - strand, within LRK53_RS00680at 155.027 kb on - strand, within LRK53_RS00680

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 20AA_mix
remove
151,753 - -0.1
151,753 - +0.5
151,753 - -0.4
151,753 - +0.1
151,753 - -0.1
151,753 - +2.5
151,753 - +1.5
151,862 + -1.1
151,862 + +0.5
151,862 + -0.1
151,862 + -1.3
151,863 - +1.5
151,863 - +3.0
151,863 - +0.5
152,691 + -0.8
152,692 - +0.5
152,692 - +0.5
154,228 + +1.5
154,263 + -0.8
154,263 + -1.1
154,264 - +0.5
154,264 - -0.5
154,264 - +0.7
154,264 - -0.1
154,358 - +0.5
154,454 + -1.5
154,455 - -1.4
154,490 - -0.5
154,570 + -0.2
154,570 + +0.5
154,570 + -0.9
154,570 + -0.1
154,570 + -1.4
154,570 + -1.1
154,571 - -0.1
154,571 - -0.4
154,571 - +0.5
154,571 - -0.9
154,571 - -0.1
154,571 - -0.4
154,571 - -0.7
154,571 - -1.4
154,571 - -1.1
154,571 - -1.3
154,939 + LRK53_RS00680 0.58 -2.0
155,026 + LRK53_RS00680 0.70 -0.8
155,026 + LRK53_RS00680 0.70 -0.5
155,026 + LRK53_RS00680 0.70 +0.2
155,027 - LRK53_RS00680 0.70 -0.5
155,027 - LRK53_RS00680 0.70 -0.5

Or see this region's nucleotide sequence