Experiment: defined media with 20AA_mix
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00665 and LRK53_RS00670 are separated by 130 nucleotides LRK53_RS00670 and LRK53_RS00675 are separated by 111 nucleotides LRK53_RS00675 and LRK53_RS00680 are separated by 347 nucleotides
LRK53_RS00665: LRK53_RS00665 - phosphogluconate dehydratase, at 149,917 to 151,734
_RS00665
LRK53_RS00670: LRK53_RS00670 - 6-phosphogluconolactonase, at 151,865 to 152,578
_RS00670
LRK53_RS00675: LRK53_RS00675 - glucose-6-phosphate dehydrogenase, at 152,690 to 154,153
_RS00675
LRK53_RS00680: LRK53_RS00680 - GntR family transcriptional regulator, at 154,501 to 155,253
_RS00680
Position (kb)
152
153
154
155 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 151.753 kb on - strand at 151.753 kb on - strand at 151.753 kb on - strand at 151.753 kb on - strand at 151.753 kb on - strand at 151.753 kb on - strand at 151.753 kb on - strand at 151.862 kb on + strand at 151.862 kb on + strand at 151.862 kb on + strand at 151.862 kb on + strand at 151.863 kb on - strand at 151.863 kb on - strand at 151.863 kb on - strand at 152.691 kb on + strand at 152.692 kb on - strand at 152.692 kb on - strand at 154.228 kb on + strand at 154.263 kb on + strand at 154.263 kb on + strand at 154.264 kb on - strand at 154.264 kb on - strand at 154.264 kb on - strand at 154.264 kb on - strand at 154.358 kb on - strand at 154.454 kb on + strand at 154.455 kb on - strand at 154.490 kb on - strand at 154.570 kb on + strand at 154.570 kb on + strand at 154.570 kb on + strand at 154.570 kb on + strand at 154.570 kb on + strand at 154.570 kb on + strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.571 kb on - strand at 154.939 kb on + strand, within LRK53_RS00680 at 155.026 kb on + strand, within LRK53_RS00680 at 155.026 kb on + strand, within LRK53_RS00680 at 155.026 kb on + strand, within LRK53_RS00680 at 155.027 kb on - strand, within LRK53_RS00680 at 155.027 kb on - strand, within LRK53_RS00680
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 20AA_mix remove 151,753 - -0.1 151,753 - +0.5 151,753 - -0.4 151,753 - +0.1 151,753 - -0.1 151,753 - +2.5 151,753 - +1.5 151,862 + -1.1 151,862 + +0.5 151,862 + -0.1 151,862 + -1.3 151,863 - +1.5 151,863 - +3.0 151,863 - +0.5 152,691 + -0.8 152,692 - +0.5 152,692 - +0.5 154,228 + +1.5 154,263 + -0.8 154,263 + -1.1 154,264 - +0.5 154,264 - -0.5 154,264 - +0.7 154,264 - -0.1 154,358 - +0.5 154,454 + -1.5 154,455 - -1.4 154,490 - -0.5 154,570 + -0.2 154,570 + +0.5 154,570 + -0.9 154,570 + -0.1 154,570 + -1.4 154,570 + -1.1 154,571 - -0.1 154,571 - -0.4 154,571 - +0.5 154,571 - -0.9 154,571 - -0.1 154,571 - -0.4 154,571 - -0.7 154,571 - -1.4 154,571 - -1.1 154,571 - -1.3 154,939 + LRK53_RS00680 0.58 -2.0 155,026 + LRK53_RS00680 0.70 -0.8 155,026 + LRK53_RS00680 0.70 -0.5 155,026 + LRK53_RS00680 0.70 +0.2 155,027 - LRK53_RS00680 0.70 -0.5 155,027 - LRK53_RS00680 0.70 -0.5
Or see this region's nucleotide sequence