Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00670

Experiment: defined media with 20AA_mix

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS00665 and LRK53_RS00670 are separated by 130 nucleotidesLRK53_RS00670 and LRK53_RS00675 are separated by 111 nucleotides LRK53_RS00665: LRK53_RS00665 - phosphogluconate dehydratase, at 149,917 to 151,734 _RS00665 LRK53_RS00670: LRK53_RS00670 - 6-phosphogluconolactonase, at 151,865 to 152,578 _RS00670 LRK53_RS00675: LRK53_RS00675 - glucose-6-phosphate dehydrogenase, at 152,690 to 154,153 _RS00675 Position (kb) 151 152 153Strain fitness (log2 ratio) -1 0 1 2 3at 151.753 kb on - strandat 151.753 kb on - strandat 151.753 kb on - strandat 151.753 kb on - strandat 151.753 kb on - strandat 151.753 kb on - strandat 151.753 kb on - strandat 151.862 kb on + strandat 151.862 kb on + strandat 151.862 kb on + strandat 151.862 kb on + strandat 151.863 kb on - strandat 151.863 kb on - strandat 151.863 kb on - strandat 152.691 kb on + strandat 152.692 kb on - strandat 152.692 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 20AA_mix
remove
151,753 - -0.1
151,753 - +0.5
151,753 - -0.4
151,753 - +0.1
151,753 - -0.1
151,753 - +2.5
151,753 - +1.5
151,862 + -1.1
151,862 + +0.5
151,862 + -0.1
151,862 + -1.3
151,863 - +1.5
151,863 - +3.0
151,863 - +0.5
152,691 + -0.8
152,692 - +0.5
152,692 - +0.5

Or see this region's nucleotide sequence