Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00585

Experiment: defined media with 20AA_mix

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00580 and LRK53_RS00585 are separated by 34 nucleotidesLRK53_RS00585 and LRK53_RS00590 are separated by 336 nucleotidesLRK53_RS00590 and LRK53_RS00595 are separated by 3 nucleotides LRK53_RS00580: LRK53_RS00580 - hypothetical protein, at 132,168 to 133,502 _RS00580 LRK53_RS00585: LRK53_RS00585 - decarboxylating 6-phosphogluconate dehydrogenase, at 133,537 to 134,442 _RS00585 LRK53_RS00590: LRK53_RS00590 - DUF488 domain-containing protein, at 134,779 to 135,327 _RS00590 LRK53_RS00595: LRK53_RS00595 - DUF2945 domain-containing protein, at 135,331 to 135,543 _RS00595 Position (kb) 133 134 135Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 132.579 kb on + strand, within LRK53_RS00580at 132.579 kb on + strand, within LRK53_RS00580at 132.580 kb on - strand, within LRK53_RS00580at 132.580 kb on - strand, within LRK53_RS00580at 132.580 kb on - strand, within LRK53_RS00580at 132.580 kb on - strand, within LRK53_RS00580at 132.636 kb on + strand, within LRK53_RS00580at 132.637 kb on - strand, within LRK53_RS00580at 132.637 kb on - strand, within LRK53_RS00580at 132.637 kb on - strand, within LRK53_RS00580at 132.756 kb on + strand, within LRK53_RS00580at 132.756 kb on + strand, within LRK53_RS00580at 132.756 kb on + strand, within LRK53_RS00580at 132.756 kb on + strand, within LRK53_RS00580at 132.757 kb on - strand, within LRK53_RS00580at 132.757 kb on - strand, within LRK53_RS00580at 132.757 kb on - strand, within LRK53_RS00580at 132.757 kb on - strand, within LRK53_RS00580at 132.757 kb on - strand, within LRK53_RS00580at 132.757 kb on - strand, within LRK53_RS00580at 132.804 kb on + strand, within LRK53_RS00580at 132.804 kb on + strand, within LRK53_RS00580at 132.805 kb on - strand, within LRK53_RS00580at 132.805 kb on - strand, within LRK53_RS00580at 132.825 kb on + strand, within LRK53_RS00580at 132.825 kb on + strand, within LRK53_RS00580at 132.825 kb on + strand, within LRK53_RS00580at 132.826 kb on - strand, within LRK53_RS00580at 132.826 kb on - strand, within LRK53_RS00580at 132.843 kb on + strand, within LRK53_RS00580at 132.843 kb on + strand, within LRK53_RS00580at 132.843 kb on + strand, within LRK53_RS00580at 132.843 kb on + strand, within LRK53_RS00580at 132.844 kb on - strand, within LRK53_RS00580at 132.855 kb on + strand, within LRK53_RS00580at 132.855 kb on + strand, within LRK53_RS00580at 132.855 kb on + strand, within LRK53_RS00580at 132.855 kb on + strand, within LRK53_RS00580at 132.855 kb on + strand, within LRK53_RS00580at 132.855 kb on + strand, within LRK53_RS00580at 132.855 kb on + strand, within LRK53_RS00580at 132.855 kb on + strand, within LRK53_RS00580at 132.855 kb on + strand, within LRK53_RS00580at 132.856 kb on - strand, within LRK53_RS00580at 132.856 kb on - strand, within LRK53_RS00580at 132.861 kb on + strand, within LRK53_RS00580at 132.861 kb on + strand, within LRK53_RS00580at 132.861 kb on + strand, within LRK53_RS00580at 132.861 kb on + strand, within LRK53_RS00580at 132.861 kb on + strand, within LRK53_RS00580at 132.862 kb on - strand, within LRK53_RS00580at 132.862 kb on - strand, within LRK53_RS00580at 132.862 kb on - strand, within LRK53_RS00580at 132.954 kb on + strand, within LRK53_RS00580at 132.954 kb on + strand, within LRK53_RS00580at 132.954 kb on + strand, within LRK53_RS00580at 132.954 kb on + strand, within LRK53_RS00580at 132.955 kb on - strand, within LRK53_RS00580at 132.955 kb on - strand, within LRK53_RS00580at 132.996 kb on + strand, within LRK53_RS00580at 133.029 kb on + strand, within LRK53_RS00580at 133.113 kb on + strand, within LRK53_RS00580at 133.113 kb on + strand, within LRK53_RS00580at 133.113 kb on + strand, within LRK53_RS00580at 133.114 kb on - strand, within LRK53_RS00580at 133.114 kb on - strand, within LRK53_RS00580at 133.114 kb on - strand, within LRK53_RS00580at 133.114 kb on - strand, within LRK53_RS00580at 133.114 kb on - strand, within LRK53_RS00580at 133.114 kb on - strand, within LRK53_RS00580at 133.119 kb on + strand, within LRK53_RS00580at 133.119 kb on + strand, within LRK53_RS00580at 133.120 kb on - strand, within LRK53_RS00580at 133.120 kb on - strand, within LRK53_RS00580at 133.120 kb on - strand, within LRK53_RS00580at 133.120 kb on - strand, within LRK53_RS00580at 133.120 kb on - strand, within LRK53_RS00580at 133.120 kb on - strand, within LRK53_RS00580at 133.120 kb on - strand, within LRK53_RS00580at 133.120 kb on - strand, within LRK53_RS00580at 133.227 kb on + strand, within LRK53_RS00580at 133.227 kb on + strand, within LRK53_RS00580at 133.227 kb on + strand, within LRK53_RS00580at 133.227 kb on + strand, within LRK53_RS00580at 133.227 kb on + strand, within LRK53_RS00580at 133.228 kb on - strand, within LRK53_RS00580at 133.228 kb on - strand, within LRK53_RS00580at 133.228 kb on - strand, within LRK53_RS00580at 133.228 kb on - strand, within LRK53_RS00580at 133.228 kb on - strand, within LRK53_RS00580at 133.228 kb on - strand, within LRK53_RS00580at 133.228 kb on - strand, within LRK53_RS00580at 133.228 kb on - strand, within LRK53_RS00580at 133.228 kb on - strand, within LRK53_RS00580at 133.228 kb on - strand, within LRK53_RS00580at 133.266 kb on + strand, within LRK53_RS00580at 133.342 kb on - strand, within LRK53_RS00580at 133.828 kb on + strand, within LRK53_RS00585at 133.828 kb on + strand, within LRK53_RS00585at 133.828 kb on + strand, within LRK53_RS00585at 133.828 kb on + strand, within LRK53_RS00585at 133.828 kb on + strand, within LRK53_RS00585at 133.828 kb on + strand, within LRK53_RS00585at 133.829 kb on - strand, within LRK53_RS00585at 133.829 kb on - strand, within LRK53_RS00585at 133.829 kb on - strand, within LRK53_RS00585at 133.829 kb on - strand, within LRK53_RS00585at 133.829 kb on - strand, within LRK53_RS00585at 133.829 kb on - strand, within LRK53_RS00585at 133.829 kb on - strand, within LRK53_RS00585at 133.829 kb on - strand, within LRK53_RS00585at 133.829 kb on - strand, within LRK53_RS00585at 133.829 kb on - strand, within LRK53_RS00585at 133.829 kb on - strand, within LRK53_RS00585at 133.879 kb on + strand, within LRK53_RS00585at 133.879 kb on + strand, within LRK53_RS00585at 133.879 kb on + strand, within LRK53_RS00585at 133.880 kb on - strand, within LRK53_RS00585at 133.880 kb on - strand, within LRK53_RS00585at 133.880 kb on - strand, within LRK53_RS00585at 133.880 kb on - strand, within LRK53_RS00585at 133.880 kb on - strand, within LRK53_RS00585at 133.880 kb on - strand, within LRK53_RS00585at 133.927 kb on + strand, within LRK53_RS00585at 133.927 kb on + strand, within LRK53_RS00585at 133.927 kb on + strand, within LRK53_RS00585at 133.927 kb on + strand, within LRK53_RS00585at 133.928 kb on - strand, within LRK53_RS00585at 133.928 kb on - strand, within LRK53_RS00585at 133.928 kb on - strand, within LRK53_RS00585at 133.928 kb on - strand, within LRK53_RS00585at 133.928 kb on - strand, within LRK53_RS00585at 133.928 kb on - strand, within LRK53_RS00585at 134.077 kb on + strand, within LRK53_RS00585at 134.078 kb on - strand, within LRK53_RS00585at 134.095 kb on + strand, within LRK53_RS00585at 134.095 kb on + strand, within LRK53_RS00585at 134.096 kb on - strand, within LRK53_RS00585at 134.257 kb on + strand, within LRK53_RS00585at 134.257 kb on + strand, within LRK53_RS00585at 134.257 kb on + strand, within LRK53_RS00585at 134.257 kb on + strand, within LRK53_RS00585at 134.257 kb on + strand, within LRK53_RS00585at 134.257 kb on + strand, within LRK53_RS00585at 134.258 kb on - strand, within LRK53_RS00585at 134.258 kb on - strand, within LRK53_RS00585at 134.258 kb on - strand, within LRK53_RS00585at 134.258 kb on - strand, within LRK53_RS00585at 134.353 kb on + strandat 134.440 kb on + strandat 134.440 kb on + strandat 134.780 kb on + strandat 134.780 kb on + strandat 134.781 kb on - strandat 134.807 kb on + strandat 134.807 kb on + strandat 134.808 kb on - strandat 134.808 kb on - strandat 134.808 kb on - strandat 134.808 kb on - strandat 134.846 kb on + strand, within LRK53_RS00590at 134.846 kb on + strand, within LRK53_RS00590at 134.846 kb on + strand, within LRK53_RS00590at 134.846 kb on + strand, within LRK53_RS00590at 134.846 kb on + strand, within LRK53_RS00590at 134.847 kb on - strand, within LRK53_RS00590at 134.847 kb on - strand, within LRK53_RS00590at 135.038 kb on + strand, within LRK53_RS00590at 135.039 kb on - strand, within LRK53_RS00590at 135.078 kb on + strand, within LRK53_RS00590at 135.135 kb on - strand, within LRK53_RS00590at 135.135 kb on - strand, within LRK53_RS00590at 135.401 kb on + strand, within LRK53_RS00595at 135.401 kb on + strand, within LRK53_RS00595at 135.401 kb on + strand, within LRK53_RS00595at 135.402 kb on - strand, within LRK53_RS00595at 135.402 kb on - strand, within LRK53_RS00595at 135.402 kb on - strand, within LRK53_RS00595

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 20AA_mix
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132,579 + LRK53_RS00580 0.31 +0.5
132,579 + LRK53_RS00580 0.31 -1.7
132,580 - LRK53_RS00580 0.31 +1.5
132,580 - LRK53_RS00580 0.31 -0.5
132,580 - LRK53_RS00580 0.31 -0.7
132,580 - LRK53_RS00580 0.31 -0.9
132,636 + LRK53_RS00580 0.35 -0.1
132,637 - LRK53_RS00580 0.35 -0.1
132,637 - LRK53_RS00580 0.35 -0.3
132,637 - LRK53_RS00580 0.35 +0.5
132,756 + LRK53_RS00580 0.44 -0.1
132,756 + LRK53_RS00580 0.44 -0.1
132,756 + LRK53_RS00580 0.44 +0.5
132,756 + LRK53_RS00580 0.44 +1.0
132,757 - LRK53_RS00580 0.44 -0.1
132,757 - LRK53_RS00580 0.44 -0.9
132,757 - LRK53_RS00580 0.44 +2.5
132,757 - LRK53_RS00580 0.44 -0.9
132,757 - LRK53_RS00580 0.44 -0.9
132,757 - LRK53_RS00580 0.44 +0.5
132,804 + LRK53_RS00580 0.48 +0.7
132,804 + LRK53_RS00580 0.48 -0.0
132,805 - LRK53_RS00580 0.48 +0.5
132,805 - LRK53_RS00580 0.48 -0.5
132,825 + LRK53_RS00580 0.49 -0.4
132,825 + LRK53_RS00580 0.49 -0.7
132,825 + LRK53_RS00580 0.49 -0.5
132,826 - LRK53_RS00580 0.49 -1.0
132,826 - LRK53_RS00580 0.49 -0.9
132,843 + LRK53_RS00580 0.51 +0.1
132,843 + LRK53_RS00580 0.51 +1.5
132,843 + LRK53_RS00580 0.51 -0.7
132,843 + LRK53_RS00580 0.51 -1.4
132,844 - LRK53_RS00580 0.51 +1.5
132,855 + LRK53_RS00580 0.51 -0.4
132,855 + LRK53_RS00580 0.51 +0.5
132,855 + LRK53_RS00580 0.51 -1.2
132,855 + LRK53_RS00580 0.51 -1.5
132,855 + LRK53_RS00580 0.51 -0.9
132,855 + LRK53_RS00580 0.51 +1.5
132,855 + LRK53_RS00580 0.51 -1.0
132,855 + LRK53_RS00580 0.51 -1.7
132,855 + LRK53_RS00580 0.51 -0.5
132,856 - LRK53_RS00580 0.52 -1.4
132,856 - LRK53_RS00580 0.52 -1.4
132,861 + LRK53_RS00580 0.52 -1.7
132,861 + LRK53_RS00580 0.52 +0.5
132,861 + LRK53_RS00580 0.52 +0.1
132,861 + LRK53_RS00580 0.52 -0.9
132,861 + LRK53_RS00580 0.52 +1.5
132,862 - LRK53_RS00580 0.52 -0.1
132,862 - LRK53_RS00580 0.52 +1.0
132,862 - LRK53_RS00580 0.52 -0.7
132,954 + LRK53_RS00580 0.59 -0.9
132,954 + LRK53_RS00580 0.59 -0.1
132,954 + LRK53_RS00580 0.59 -0.1
132,954 + LRK53_RS00580 0.59 -0.1
132,955 - LRK53_RS00580 0.59 -0.9
132,955 - LRK53_RS00580 0.59 -0.0
132,996 + LRK53_RS00580 0.62 +0.1
133,029 + LRK53_RS00580 0.64 -0.9
133,113 + LRK53_RS00580 0.71 +1.5
133,113 + LRK53_RS00580 0.71 -0.5
133,113 + LRK53_RS00580 0.71 +0.9
133,114 - LRK53_RS00580 0.71 -0.9
133,114 - LRK53_RS00580 0.71 -0.1
133,114 - LRK53_RS00580 0.71 +1.0
133,114 - LRK53_RS00580 0.71 -0.1
133,114 - LRK53_RS00580 0.71 -0.9
133,114 - LRK53_RS00580 0.71 +0.5
133,119 + LRK53_RS00580 0.71 -0.7
133,119 + LRK53_RS00580 0.71 -0.1
133,120 - LRK53_RS00580 0.71 -0.1
133,120 - LRK53_RS00580 0.71 -0.1
133,120 - LRK53_RS00580 0.71 -1.6
133,120 - LRK53_RS00580 0.71 -0.4
133,120 - LRK53_RS00580 0.71 -0.4
133,120 - LRK53_RS00580 0.71 -1.5
133,120 - LRK53_RS00580 0.71 -0.4
133,120 - LRK53_RS00580 0.71 -1.5
133,227 + LRK53_RS00580 0.79 +0.9
133,227 + LRK53_RS00580 0.79 -0.5
133,227 + LRK53_RS00580 0.79 -0.4
133,227 + LRK53_RS00580 0.79 -1.4
133,227 + LRK53_RS00580 0.79 +1.8
133,228 - LRK53_RS00580 0.79 -1.5
133,228 - LRK53_RS00580 0.79 -1.1
133,228 - LRK53_RS00580 0.79 -1.5
133,228 - LRK53_RS00580 0.79 -0.1
133,228 - LRK53_RS00580 0.79 +0.5
133,228 - LRK53_RS00580 0.79 -0.1
133,228 - LRK53_RS00580 0.79 -1.4
133,228 - LRK53_RS00580 0.79 +0.5
133,228 - LRK53_RS00580 0.79 -0.1
133,228 - LRK53_RS00580 0.79 -1.1
133,266 + LRK53_RS00580 0.82 -0.3
133,342 - LRK53_RS00580 0.88 -1.4
133,828 + LRK53_RS00585 0.32 -1.8
133,828 + LRK53_RS00585 0.32 -0.1
133,828 + LRK53_RS00585 0.32 -0.4
133,828 + LRK53_RS00585 0.32 -0.5
133,828 + LRK53_RS00585 0.32 +0.5
133,828 + LRK53_RS00585 0.32 -1.1
133,829 - LRK53_RS00585 0.32 +0.5
133,829 - LRK53_RS00585 0.32 -0.5
133,829 - LRK53_RS00585 0.32 +1.5
133,829 - LRK53_RS00585 0.32 +1.0
133,829 - LRK53_RS00585 0.32 -1.6
133,829 - LRK53_RS00585 0.32 +0.5
133,829 - LRK53_RS00585 0.32 -0.9
133,829 - LRK53_RS00585 0.32 +1.5
133,829 - LRK53_RS00585 0.32 -1.0
133,829 - LRK53_RS00585 0.32 -1.7
133,829 - LRK53_RS00585 0.32 -0.1
133,879 + LRK53_RS00585 0.38 +1.5
133,879 + LRK53_RS00585 0.38 -0.4
133,879 + LRK53_RS00585 0.38 -1.3
133,880 - LRK53_RS00585 0.38 +1.5
133,880 - LRK53_RS00585 0.38 +0.5
133,880 - LRK53_RS00585 0.38 +0.5
133,880 - LRK53_RS00585 0.38 +1.5
133,880 - LRK53_RS00585 0.38 +0.5
133,880 - LRK53_RS00585 0.38 -1.4
133,927 + LRK53_RS00585 0.43 -0.1
133,927 + LRK53_RS00585 0.43 -1.4
133,927 + LRK53_RS00585 0.43 -0.9
133,927 + LRK53_RS00585 0.43 -1.5
133,928 - LRK53_RS00585 0.43 -0.5
133,928 - LRK53_RS00585 0.43 +0.5
133,928 - LRK53_RS00585 0.43 -0.5
133,928 - LRK53_RS00585 0.43 -0.5
133,928 - LRK53_RS00585 0.43 -0.5
133,928 - LRK53_RS00585 0.43 +0.1
134,077 + LRK53_RS00585 0.60 +0.5
134,078 - LRK53_RS00585 0.60 -0.9
134,095 + LRK53_RS00585 0.62 -0.4
134,095 + LRK53_RS00585 0.62 +0.5
134,096 - LRK53_RS00585 0.62 +2.5
134,257 + LRK53_RS00585 0.79 -0.4
134,257 + LRK53_RS00585 0.79 +1.5
134,257 + LRK53_RS00585 0.79 +0.1
134,257 + LRK53_RS00585 0.79 +1.5
134,257 + LRK53_RS00585 0.79 +0.5
134,257 + LRK53_RS00585 0.79 -1.4
134,258 - LRK53_RS00585 0.80 -0.1
134,258 - LRK53_RS00585 0.80 +0.1
134,258 - LRK53_RS00585 0.80 +0.5
134,258 - LRK53_RS00585 0.80 +0.5
134,353 + -0.3
134,440 + +0.5
134,440 + -0.7
134,780 + -2.1
134,780 + +2.0
134,781 - -1.2
134,807 + -0.5
134,807 + -1.4
134,808 - -1.6
134,808 - -0.9
134,808 - -2.7
134,808 - -0.1
134,846 + LRK53_RS00590 0.12 -0.9
134,846 + LRK53_RS00590 0.12 +1.5
134,846 + LRK53_RS00590 0.12 -1.5
134,846 + LRK53_RS00590 0.12 -0.5
134,846 + LRK53_RS00590 0.12 -0.3
134,847 - LRK53_RS00590 0.12 -1.5
134,847 - LRK53_RS00590 0.12 -0.9
135,038 + LRK53_RS00590 0.47 -0.5
135,039 - LRK53_RS00590 0.47 -0.4
135,078 + LRK53_RS00590 0.54 -0.4
135,135 - LRK53_RS00590 0.65 -3.1
135,135 - LRK53_RS00590 0.65 -0.1
135,401 + LRK53_RS00595 0.33 +0.3
135,401 + LRK53_RS00595 0.33 -2.1
135,401 + LRK53_RS00595 0.33 -0.2
135,402 - LRK53_RS00595 0.33 +0.6
135,402 - LRK53_RS00595 0.33 -0.7
135,402 - LRK53_RS00595 0.33 +0.5

Or see this region's nucleotide sequence