Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gpA1 and JDDGAC_27880 overlap by 4 nucleotides JDDGAC_27880 and JDDGAC_27885 overlap by 1 nucleotides
JDDGAC_27875: gpA1 - terminase, at 5,340,058 to 5,342,181
gpA1
JDDGAC_27880: JDDGAC_27880 - Phage protein, at 5,342,178 to 5,342,390
_27880
JDDGAC_27885: JDDGAC_27885 - phage portal protein, at 5,342,390 to 5,343,892
_27885
Position (kb) 5342
5343 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5341.195 kb on + strand, within gpA1 at 5341.195 kb on + strand, within gpA1 at 5341.196 kb on - strand, within gpA1 at 5341.196 kb on - strand, within gpA1 at 5341.313 kb on + strand, within gpA1 at 5341.500 kb on + strand, within gpA1 at 5341.500 kb on + strand, within gpA1 at 5341.590 kb on + strand, within gpA1 at 5341.794 kb on + strand, within gpA1 at 5341.795 kb on - strand, within gpA1 at 5341.828 kb on + strand, within gpA1 at 5341.828 kb on + strand, within gpA1 at 5341.828 kb on + strand, within gpA1 at 5341.829 kb on - strand, within gpA1 at 5341.829 kb on - strand, within gpA1 at 5341.829 kb on - strand, within gpA1 at 5341.829 kb on - strand, within gpA1 at 5341.865 kb on - strand, within gpA1 at 5341.879 kb on + strand, within gpA1 at 5341.880 kb on - strand, within gpA1 at 5342.148 kb on + strand at 5342.148 kb on + strand at 5342.236 kb on + strand, within JDDGAC_27880 at 5342.398 kb on + strand at 5342.398 kb on + strand at 5342.503 kb on + strand at 5342.503 kb on + strand at 5342.542 kb on + strand, within JDDGAC_27885 at 5342.542 kb on + strand, within JDDGAC_27885 at 5342.542 kb on + strand, within JDDGAC_27885 at 5342.657 kb on - strand, within JDDGAC_27885 at 5342.768 kb on + strand, within JDDGAC_27885 at 5342.768 kb on + strand, within JDDGAC_27885 at 5343.203 kb on + strand, within JDDGAC_27885 at 5343.203 kb on + strand, within JDDGAC_27885 at 5343.203 kb on + strand, within JDDGAC_27885 at 5343.203 kb on + strand, within JDDGAC_27885 at 5343.203 kb on + strand, within JDDGAC_27885 at 5343.204 kb on - strand, within JDDGAC_27885 at 5343.204 kb on - strand, within JDDGAC_27885 at 5343.204 kb on - strand, within JDDGAC_27885 at 5343.204 kb on - strand, within JDDGAC_27885 at 5343.286 kb on + strand, within JDDGAC_27885 at 5343.291 kb on - strand, within JDDGAC_27885
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 5,341,195 + gpA1 JDDGAC_27875 0.54 +0.3 5,341,195 + gpA1 JDDGAC_27875 0.54 +0.2 5,341,196 - gpA1 JDDGAC_27875 0.54 -0.6 5,341,196 - gpA1 JDDGAC_27875 0.54 -0.2 5,341,313 + gpA1 JDDGAC_27875 0.59 +1.1 5,341,500 + gpA1 JDDGAC_27875 0.68 -0.6 5,341,500 + gpA1 JDDGAC_27875 0.68 +1.0 5,341,590 + gpA1 JDDGAC_27875 0.72 +0.0 5,341,794 + gpA1 JDDGAC_27875 0.82 -0.2 5,341,795 - gpA1 JDDGAC_27875 0.82 +0.2 5,341,828 + gpA1 JDDGAC_27875 0.83 -2.1 5,341,828 + gpA1 JDDGAC_27875 0.83 +1.0 5,341,828 + gpA1 JDDGAC_27875 0.83 +0.7 5,341,829 - gpA1 JDDGAC_27875 0.83 +0.5 5,341,829 - gpA1 JDDGAC_27875 0.83 +0.6 5,341,829 - gpA1 JDDGAC_27875 0.83 +0.8 5,341,829 - gpA1 JDDGAC_27875 0.83 -3.6 5,341,865 - gpA1 JDDGAC_27875 0.85 +0.6 5,341,879 + gpA1 JDDGAC_27875 0.86 -0.8 5,341,880 - gpA1 JDDGAC_27875 0.86 -1.1 5,342,148 + -2.2 5,342,148 + -0.2 5,342,236 + JDDGAC_27880 0.27 -1.4 5,342,398 + +0.4 5,342,398 + +0.6 5,342,503 + +1.3 5,342,503 + +1.6 5,342,542 + JDDGAC_27885 0.10 -0.0 5,342,542 + JDDGAC_27885 0.10 -1.1 5,342,542 + JDDGAC_27885 0.10 +1.1 5,342,657 - JDDGAC_27885 0.18 -1.2 5,342,768 + JDDGAC_27885 0.25 -0.4 5,342,768 + JDDGAC_27885 0.25 +0.2 5,343,203 + JDDGAC_27885 0.54 +0.1 5,343,203 + JDDGAC_27885 0.54 +0.8 5,343,203 + JDDGAC_27885 0.54 -1.3 5,343,203 + JDDGAC_27885 0.54 +0.4 5,343,203 + JDDGAC_27885 0.54 -0.4 5,343,204 - JDDGAC_27885 0.54 +0.2 5,343,204 - JDDGAC_27885 0.54 +0.4 5,343,204 - JDDGAC_27885 0.54 -0.1 5,343,204 - JDDGAC_27885 0.54 -0.4 5,343,286 + JDDGAC_27885 0.60 -2.0 5,343,291 - JDDGAC_27885 0.60 +0.1
Or see this region's nucleotide sequence