Strain Fitness in Escherichia coli ECRC98 around JDDGAC_26390

Experiment: WM_K30

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntevgS and evgA are separated by 4 nucleotidesevgA and evgL overlap by 4 nucleotidesevgL and emrK are separated by 389 nucleotides JDDGAC_26385: evgS - acid-sensing system histidine kinase EvgS, at 5,046,076 to 5,049,669 evgS JDDGAC_26390: evgA - acid-sensing system DNA-binding response regulator EvgA, at 5,049,674 to 5,050,288 evgA JDDGAC_26395: evgL - Protein EvgL, at 5,050,285 to 5,050,314 evgL JDDGAC_26400: emrK - multidrug efflux MFS transporter periplasmic adaptor subunit EmrK, at 5,050,704 to 5,051,867 emrK Position (kb) 5049 5050 5051Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 5048.806 kb on + strand, within evgSat 5048.905 kb on + strand, within evgSat 5049.310 kb on + strandat 5049.311 kb on - strandat 5049.311 kb on - strandat 5049.385 kb on - strandat 5049.413 kb on + strandat 5049.705 kb on + strandat 5049.841 kb on + strand, within evgAat 5049.842 kb on - strand, within evgAat 5049.925 kb on - strand, within evgAat 5050.064 kb on - strand, within evgAat 5050.344 kb on - strandat 5050.421 kb on - strandat 5050.433 kb on + strandat 5050.434 kb on - strandat 5050.499 kb on - strandat 5050.554 kb on - strandat 5050.699 kb on + strandat 5051.055 kb on + strand, within emrKat 5051.088 kb on + strand, within emrKat 5051.185 kb on + strand, within emrKat 5051.186 kb on - strand, within emrK

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_K30
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5,048,806 + evgS JDDGAC_26385 0.76 +0.1
5,048,905 + evgS JDDGAC_26385 0.79 -1.7
5,049,310 + +0.7
5,049,311 - +0.4
5,049,311 - -0.2
5,049,385 - -1.9
5,049,413 + -0.5
5,049,705 + -1.7
5,049,841 + evgA JDDGAC_26390 0.27 -0.5
5,049,842 - evgA JDDGAC_26390 0.27 -0.6
5,049,925 - evgA JDDGAC_26390 0.41 -5.8
5,050,064 - evgA JDDGAC_26390 0.63 -0.5
5,050,344 - +0.6
5,050,421 - -0.6
5,050,433 + -0.8
5,050,434 - -0.0
5,050,499 - +0.1
5,050,554 - -0.2
5,050,699 + -0.5
5,051,055 + emrK JDDGAC_26400 0.30 +2.7
5,051,088 + emrK JDDGAC_26400 0.33 -0.6
5,051,185 + emrK JDDGAC_26400 0.41 +0.2
5,051,186 - emrK JDDGAC_26400 0.41 +0.9

Or see this region's nucleotide sequence