Experiment: WM_K30
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt evgS and evgA are separated by 4 nucleotides evgA and evgL overlap by 4 nucleotides evgL and emrK are separated by 389 nucleotides
JDDGAC_26385: evgS - acid-sensing system histidine kinase EvgS, at 5,046,076 to 5,049,669
evgS
JDDGAC_26390: evgA - acid-sensing system DNA-binding response regulator EvgA, at 5,049,674 to 5,050,288
evgA
JDDGAC_26395: evgL - Protein EvgL, at 5,050,285 to 5,050,314
evgL
JDDGAC_26400: emrK - multidrug efflux MFS transporter periplasmic adaptor subunit EmrK, at 5,050,704 to 5,051,867
emrK
Position (kb)
5049
5050
5051 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 5048.806 kb on + strand, within evgS at 5048.905 kb on + strand, within evgS at 5049.310 kb on + strand at 5049.311 kb on - strand at 5049.311 kb on - strand at 5049.385 kb on - strand at 5049.413 kb on + strand at 5049.705 kb on + strand at 5049.841 kb on + strand, within evgA at 5049.842 kb on - strand, within evgA at 5049.925 kb on - strand, within evgA at 5050.064 kb on - strand, within evgA at 5050.344 kb on - strand at 5050.421 kb on - strand at 5050.433 kb on + strand at 5050.434 kb on - strand at 5050.499 kb on - strand at 5050.554 kb on - strand at 5050.699 kb on + strand at 5051.055 kb on + strand, within emrK at 5051.088 kb on + strand, within emrK at 5051.185 kb on + strand, within emrK at 5051.186 kb on - strand, within emrK
Per-strain Table
Position Strand Gene LocusTag Fraction WM_K30 remove 5,048,806 + evgS JDDGAC_26385 0.76 +0.1 5,048,905 + evgS JDDGAC_26385 0.79 -1.7 5,049,310 + +0.7 5,049,311 - +0.4 5,049,311 - -0.2 5,049,385 - -1.9 5,049,413 + -0.5 5,049,705 + -1.7 5,049,841 + evgA JDDGAC_26390 0.27 -0.5 5,049,842 - evgA JDDGAC_26390 0.27 -0.6 5,049,925 - evgA JDDGAC_26390 0.41 -5.8 5,050,064 - evgA JDDGAC_26390 0.63 -0.5 5,050,344 - +0.6 5,050,421 - -0.6 5,050,433 + -0.8 5,050,434 - -0.0 5,050,499 - +0.1 5,050,554 - -0.2 5,050,699 + -0.5 5,051,055 + emrK JDDGAC_26400 0.30 +2.7 5,051,088 + emrK JDDGAC_26400 0.33 -0.6 5,051,185 + emrK JDDGAC_26400 0.41 +0.2 5,051,186 - emrK JDDGAC_26400 0.41 +0.9
Or see this region's nucleotide sequence